Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1145_(mmpL13a)_1272428_1273339
DateWed Jul 31 22:05:23 BST 2019
Unique Job ID4e6374aa1d7a3d2c
SequenceMLQRIARLAI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.729 Y:67.290 Z:84.219
Model (left) based on template c6ajjA_
Top template information
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
Confidence and coverage
Confidence:100.0% Coverage:100%
303 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ajjA_



100.0 24
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:drug exporters of the rnd superfamily-like protein,
PDBTitle: crystal structure of mycolic acid transporter mmpl3 from mycobacterium2 smegmatis complexed with ica38
2c5khnB_



100.0 14
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
3c3jd8A_



100.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:niemann-pick c1 protein;
PDBTitle: cryo-em structure of the full-length human npc1 at 4.4 angstrom
4c6dmoA_



100.0 13
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
5c6owsB_



100.0 17
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
6c6csxA_



100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
7c5lq3F_



100.0 17
PDB header:transport protein
Chain: F: PDB Molecule:cmeb;
PDBTitle: structures and transport dynamics of the campylobacter jejuni2 multidrug efflux pump cmeb
8c2v50A_



100.0 16
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein mexb;
PDBTitle: the missing part of the bacterial mexab-oprm system: structural2 determination of the multidrug exporter mexb
9c4mt1A_



100.0 16
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
10c3k07A_



100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
11c1oy8A_



99.9 19
PDB header:membrane protein
Chain: A: PDB Molecule:acriflavine resistance protein b;
PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump
12c4k0eC_



99.9 12
PDB header:transport protein
Chain: C: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
13c3aqpB_



99.9 11
PDB header:membrane protein
Chain: B: PDB Molecule:probable secdf protein-export membrane protein;
PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus
14c5xamA_



99.9 16
PDB header:membrane protein
Chain: A: PDB Molecule:protein translocase subunit secd;
PDBTitle: crystal structure of secdf in i form at 4 a resolution
15c4k0eA_



99.9 13
PDB header:transport protein
Chain: A: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
16c5mg3F_



99.8 10
PDB header:chaperone
Chain: F: PDB Molecule:protein translocase subunit secf;
PDBTitle: em fitted model of bacterial holo-translocon
17d1iwga7



99.8 15
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
18d1iwga8



99.7 14
Fold:Multidrug efflux transporter AcrB transmembrane domain
Superfamily:Multidrug efflux transporter AcrB transmembrane domain
Family:Multidrug efflux transporter AcrB transmembrane domain
19c5mg3D_



99.7 13
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
20c4f0aB_



46.3 17
PDB header:signaling protein
Chain: B: PDB Molecule:protein wnt-8;
PDBTitle: crystal structure of xwnt8 in complex with the cysteine-rich domain of2 frizzled 8
21c1p58E_



not modelled 36.0 21
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
22c4av3A_



not modelled 35.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:k(+)-stimulated pyrophosphate-energized sodium pump;
PDBTitle: crystal structure of thermotoga maritima sodium pumping membrane2 integral pyrophosphatase with metal ions in active site
23c1p58F_



not modelled 32.0 29
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
24c5awqA_



not modelled 28.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:isomaltodextranase;
PDBTitle: arthrobacter globiformis t6 isomalto-dextranse complexed with panose
25c5xknF_



not modelled 26.2 67
PDB header:transferase/signaling protein
Chain: F: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
26c5xknE_



not modelled 26.2 67
PDB header:transferase/signaling protein
Chain: E: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
27c2xzmE_



not modelled 24.4 9
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
28d2c4fl3



not modelled 21.9 50
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
29c3j2pD_



not modelled 21.8 29
PDB header:viral protein
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: cryoem structure of dengue virus envelope protein heterotetramer
30c3na0C_



not modelled 20.4 56
PDB header:oxidoreductase, electron transport
Chain: C: PDB Molecule:adrenodoxin, mitochondrial;
PDBTitle: crystal structure of human cyp11a1 in complex with 20,22-2 dihydroxycholesterol
31c3zeyP_



not modelled 20.0 19
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s2, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
32c3j20F_



not modelled 19.5 22
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
33c3a23A_



not modelled 19.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative secreted alpha-galactosidase;
PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose
34c5ireD_



not modelled 18.2 19
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
35c1nl0G_



not modelled 17.5 50
PDB header:immune system
Chain: G: PDB Molecule:factor ix;
PDBTitle: crystal structure of human factor ix gla domain in complex2 of an inhibitory antibody, 10c12
36c5wsnD_



not modelled 14.8 24
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: structure of japanese encephalitis virus
37c5xyiC_



not modelled 14.7 12
PDB header:ribosome
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: small subunit of trichomonas vaginalis ribosome
38d1danl3



not modelled 14.3 50
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
39c4cbfB_



not modelled 13.3 14
PDB header:virus
Chain: B: PDB Molecule:m protein;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus
40c4a01B_



not modelled 12.9 13
PDB header:hydrolase
Chain: B: PDB Molecule:proton pyrophosphatase;
PDBTitle: crystal structure of the h-translocating pyrophosphatase
41d3bzka3



not modelled 12.5 27
Fold:Tex N-terminal region-like
Superfamily:Tex N-terminal region-like
Family:Tex N-terminal region-like
42c2ju5A_



not modelled 12.2 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin disulfide isomerase;
PDBTitle: dsbh oxidoreductase
43c6m97A_



not modelled 11.6 20
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
44c4gj4A_



not modelled 11.6 21
PDB header:lyase
Chain: A: PDB Molecule:soluble guanylyl cyclase alpha-1 subunit;
PDBTitle: the crystal structure of the soluble guanylate cyclase pas alpha2 domain from manduca sexta
45d2d32a1



not modelled 10.8 29
Fold:Glutamine synthetase/guanido kinase
Superfamily:Glutamine synthetase/guanido kinase
Family:Glutamate-cysteine ligase
46c4y0lA_



not modelled 10.6 23
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmpl11;
PDBTitle: mycobacterial membrane protein mmpl11d2
47c5tw1J_



not modelled 10.4 27
PDB header:transcription activator/transferase/dna
Chain: J: PDB Molecule:rna polymerase-binding protein rbpa;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
48c4kzzC_



not modelled 10.3 16
PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein s2;
PDBTitle: rabbit 40s ribosomal subunit in complex with mrna, initiator trna and2 eif1a
49c2oceA_



not modelled 10.1 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pa5201;
PDBTitle: crystal structure of tex family protein pa5201 from2 pseudomonas aeruginosa
50c2m4vA_



not modelled 9.2 21
PDB header:transcription
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: mycobacterium tuberculosis rna polymerase binding protein a (rbpa) and2 its interactions with sigma factors
51c6c04J_



not modelled 9.1 27
PDB header:transcription/dna
Chain: J: PDB Molecule:rna polymerase-binding protein rbpa;
PDBTitle: mtb rnap holo/rbpa/double fork dna -closed clamp
52c2cwoD_



not modelled 8.7 23
PDB header:rna binding protein
Chain: D: PDB Molecule:rna silencing suppressor;
PDBTitle: crystal structure of rna silencing suppressor p21 from beet yellows2 virus
53c4owfG_



not modelled 8.5 50
PDB header:transcription/protein binding
Chain: G: PDB Molecule:e3 ubiquitin-protein ligase rnf31;
PDBTitle: crystal structure of the nemo cozi in complex with hoip nzf1 domain
54c5fzxA_



not modelled 8.2 33
PDB header:toxin
Chain: A: PDB Molecule:u5-scytotoxin-sth1a;
PDBTitle: high resolution solution nmr structure of the spider venom2 peptide u5-scytotoxin-sth1a
55c4firB_



not modelled 8.2 42
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxal biosynthesis lyase pdxs from pyrococcus
56d1exta2



not modelled 7.7 50
Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
57c3c0uA_



not modelled 7.6 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yaeq;
PDBTitle: crystal structure of e.coli yaeq protein
58c3lrmB_



not modelled 6.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase 1;
PDBTitle: structure of alfa-galactosidase from saccharomyces cerevisiae with2 raffinose
59c6hxgE_



not modelled 6.4 55
PDB header:plant protein
Chain: E: PDB Molecule:pyridoxal 5'-phosphate synthase-like subunit pdx1.2;
PDBTitle: pdx1.2/pdx1.3 complex (intermediate)
60c3femB_



not modelled 6.3 33
PDB header:biosynthetic protein, transferase
Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1;
PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae
61c3fhkF_



not modelled 6.3 27
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide isomerase
62c5b16C_



not modelled 6.2 29
PDB header:hydrolase
Chain: C: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
63d2g3wa1



not modelled 6.1 5
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:YaeQ-like
64c3py7A_



not modelled 6.0 35
PDB header:viral protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6
PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution
65d2gc6a1



not modelled 6.0 10
Fold:MurD-like peptide ligases, peptide-binding domain
Superfamily:MurD-like peptide ligases, peptide-binding domain
Family:Folylpolyglutamate synthetase, C-terminal domain
66c2kr6A_



not modelled 5.9 11
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
67d1zpsa1



not modelled 5.9 37
Fold:HisI-like
Superfamily:HisI-like
Family:HisI-like
68c5b16B_



not modelled 5.8 29
PDB header:hydrolase
Chain: B: PDB Molecule:microprocessor complex subunit dgcr8;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
69c2nv2U_



not modelled 5.5 42
PDB header:lyase/transferase
Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis
70d2dk4a1



not modelled 5.5 22
Fold:LEM/SAP HeH motif
Superfamily:PRP4-like
Family:PRP4-like
71c6ahyD_



not modelled 5.5 17
PDB header:signaling protein
Chain: D: PDB Molecule:proto-oncogene wnt-3;
PDBTitle: wnt signaling complex
72c2f51B_



not modelled 5.2 22
PDB header:electron transport
Chain: B: PDB Molecule:thioredoxin;
PDBTitle: structure of trichomonas vaginalis thioredoxin
73c2zkqe_



not modelled 5.2 12
PDB header:ribosomal protein/rna
Chain: E: PDB Molecule:rna expansion segment es6 part ii;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
74d2ot9a1



not modelled 5.1 9
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:YaeQ-like

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