Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1148c_(-)_1276305_1277753
DateWed Jul 31 22:05:23 BST 2019
Unique Job ID2ffca56cfb032165
SequenceVSETFCLTDH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.095 Y:29.208 Z:35.470
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 99.0% Coverage: 14%
67 residues ( 14% of your sequence) have been modelled with 99.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



99.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c6ghcA_



98.8 21
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
3c5mkwA_



98.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
4c5x1hS_



98.6 15
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
5c5h0mA_



97.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
6c5vgbA_



97.8 23
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
7c5zmmD_



97.6 20
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
8c4ogeA_



96.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
9c5axwA_



96.2 11
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10c6ghsA_



94.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
11d2gykb1



88.5 18
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
12c4cmqB_



80.5 22
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
13c3mkyP_



80.4 23
PDB header:dna binding protein/dna
Chain: P: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-323)-18mer dna complex, i23 form
14d2jb0b1



79.7 19
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
15d1vz0a1



75.2 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
16c3mkzU_



72.3 22
PDB header:dna-binding protein/dna
Chain: U: PDB Molecule:protein sopb;
PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
17c3plwA_



54.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
18c5ew5C_



49.0 16
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
19c4qkoH_



44.9 16
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
20d2dlka1



40.6 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
21c7ceiB_



not modelled 39.7 16
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
22c4uhpA_



not modelled 39.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
23d1a1ga1



not modelled 37.0 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
24c2e1cA_



not modelled 36.9 13
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
25c1nbwA_



not modelled 35.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:glycerol dehydratase reactivase alpha subunit;
PDBTitle: glycerol dehydratase reactivase
26c5g2xC_



not modelled 34.5 25
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
27d1zfda_



not modelled 32.8 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
28d1w6ga1



not modelled 31.3 16
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
29d1a1ia1



not modelled 30.7 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
30d1ncsa_



not modelled 30.3 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
31d1r71a_



not modelled 30.0 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:KorB DNA-binding domain-like
Family:KorB DNA-binding domain-like
32c1i1gA_



not modelled 29.6 21
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
33c1r71B_



not modelled 29.2 23
PDB header:transcription/dna
Chain: B: PDB Molecule:transcriptional repressor protein korb;
PDBTitle: crystal structure of the dna binding domain of korb in complex with2 the operator dna
34c1va1A_



not modelled 29.1 21
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
35d1w2za1



not modelled 26.4 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
36d1a1ha1



not modelled 25.3 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
37d1u86a1



not modelled 25.1 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
38d1ubdc3



not modelled 24.1 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
39d1sp2a_



not modelled 23.7 17
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
40c2pncB_



not modelled 23.5 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
41d2glia3



not modelled 23.3 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
42d1tf3a2



not modelled 23.2 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
43c4go1A_



not modelled 23.1 24
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
44d1f2ig1



not modelled 22.9 25
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
45d1d6za1



not modelled 22.0 19
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
46d1aaya1



not modelled 21.7 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
47d2oqea1



not modelled 21.3 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
48c2cfxD_



not modelled 20.9 15
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
49c3d8mA_



not modelled 20.9 12
PDB header:virus/viral protein
Chain: A: PDB Molecule:baseplate protein, receptor binding protein;
PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2
50c3higB_



not modelled 20.0 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:amiloride-sensitive amine oxidase;
PDBTitle: crystal structure of human diamine oxidase in complex with the2 inhibitor berenil
51d1bhia_



not modelled 20.0 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
52c4czdD_



not modelled 19.9 15
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
53c2c10D_



not modelled 19.4 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:membrane copper amine oxidase;
PDBTitle: the structure of a truncated, soluble version of semicarbazide-2 sensitive amine oxidase
54d2glia4



not modelled 19.4 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
55d1zela1



not modelled 19.3 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rv2827c N-terminal domain-like
56c1ekmC_



not modelled 19.3 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure at 2.5 a resolution of zinc-substituted2 copper amine oxidase of hansenula polymorpha expressed in3 escherichia coli
57c2w48D_



not modelled 18.5 24
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
58c1d6uB_



not modelled 18.1 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine
59c3loyB_



not modelled 17.9 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a copper-containing benzylamine oxidase from2 hansenula polymorpha
60c3nbbC_



not modelled 17.0 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxisomal primary amine oxidase;
PDBTitle: crystal structure of mutant y305f expressed in e. coli in the copper2 amine oxidase from hansenula polymorpha
61c1pxeA_



not modelled 16.9 45
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
62d1nbwa3



not modelled 16.7 19
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
63c1ui7A_



not modelled 16.4 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylethylamine oxidase;
PDBTitle: site-directed mutagenesis of his433 involved in binding of2 copper ion in arthrobacter globiformis amine oxidase
64d2dlka2



not modelled 16.1 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
65c2dbbA_



not modelled 15.0 21
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
66c2bsdC_



not modelled 14.6 18
PDB header:receptor
Chain: C: PDB Molecule:receptor binding protein;
PDBTitle: structure of lactococcal bacteriophage p2 receptor binding protein
67c1vz0B_



not modelled 14.3 20
PDB header:nuclear protein
Chain: B: PDB Molecule:chromosome-partitioning protein spo0j;
PDBTitle: chromosome segregation protein spo0j from thermus thermophilus
68d1ubdc4



not modelled 14.1 24
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
69c3pwxB_



not modelled 14.0 13
PDB header:structural protein
Chain: B: PDB Molecule:putative flagellar hook-associated protein;
PDBTitle: structure of putative flagellar hook-associated protein from vibrio2 parahaemolyticus
70c1orxA_



not modelled 14.0 27
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
71d1tf6a1



not modelled 13.8 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
72d1ejga_



not modelled 13.7 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
73d1jmna_



not modelled 13.7 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
74c4clvB_



not modelled 13.4 18
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
75d2cg4a1



not modelled 13.0 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Lrp/AsnC-like transcriptional regulator N-terminal domain
76c3da0C_



not modelled 12.5 12
PDB header:viral protein
Chain: C: PDB Molecule:cleaved chimeric receptor binding protein from
PDBTitle: crystal structure of a cleaved form of a chimeric receptor binding2 protein from lactococcal phages subspecies tp901-1 and p2
77d1tf3a1



not modelled 12.5 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
78c1ksiA_



not modelled 12.4 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a eukaryotic (pea seedling) copper-containing2 amine oxidase at 2.2a resolution
79d2glia5



not modelled 10.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
80c3abdY_



not modelled 10.7 54
PDB header:cell cycle/replication
Chain: Y: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 monoclinic crystal
81c5o8kB_



not modelled 10.7 54
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of mammalian rev7 in complex with rev3 1875-1895
82c3abdX_



not modelled 10.6 54
PDB header:cell cycle/replication
Chain: X: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 monoclinic crystal
83c1jjzA_



not modelled 10.4 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
84c1k48A_



not modelled 10.4 27
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
85c3abeZ_



not modelled 9.7 54
PDB header:cell cycle/replication
Chain: Z: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 tetragonal crystal
86c1zelA_



not modelled 9.7 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2827c;
PDBTitle: crystal structure of rv2827c protein from mycobacterium tuberculosis
87c4kunB_



not modelled 9.7 27
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein lpp1115;
PDBTitle: crystal structure of legionella pneumophila lpp1115 / kaib
88c1ygmA_



not modelled 9.3 23
PDB header:membrane protein
Chain: A: PDB Molecule:hypothetical protein bsu31320;
PDBTitle: nmr structure of mistic
89c4fjoD_



not modelled 9.2 54
PDB header:transferase/dna binding protein
Chain: D: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of the rev1 ctd-rev3/7-pol kappa rir complex
90c4ch7A_



not modelled 9.1 19
PDB header:transcription
Chain: A: PDB Molecule:nird-like protein;
PDBTitle: crystal structure of the siroheme decarboxylase nirdl
91c4bgoA_



not modelled 9.0 7
PDB header:hydrolase
Chain: A: PDB Molecule:efem m75 peptidase;
PDBTitle: structural and functional role of the imelysin-like protein2 efem from pseudomonas syringae pv. syringae and3 implications in bacterial iron transport
92d1nbla_



not modelled 8.9 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
93c2entA_



not modelled 8.9 33
PDB header:transcription
Chain: A: PDB Molecule:krueppel-like factor 15;
PDBTitle: solution structure of the second c2h2-type zinc finger2 domain from human krueppel-like factor 15
94d1n1ua_



not modelled 8.6 20
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
95c1n1uA_



not modelled 8.6 20
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
96d1okha_



not modelled 8.6 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
97d2b8ta2



not modelled 8.5 11
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
98c2f2iA_



not modelled 8.4 27
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
99d1w7ca1



not modelled 8.4 13
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain

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