Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1159A_(phhB)_1286289_1286573
DateWed Jul 31 22:05:24 BST 2019
Unique Job IDfcacb5c8a5f7ce80
SequenceMAVLTDEQVD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.470 Y:41.892 Z:32.576
Model (left) based on template c2ebbA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine2 dehydratase (pterin carbinolamine dehydratase) from3 geobacillus kaustophilus hta426
Confidence and coverage
Confidence:100.0% Coverage: 97%
91 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ebbA_
100.0 32
PDB header:lyase
Chain: A: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine2 dehydratase (pterin carbinolamine dehydratase) from3 geobacillus kaustophilus hta426
2c3jstA_
100.0 36
PDB header:lyase
Chain: A: PDB Molecule:putative pterin-4-alpha-carbinolamine dehydratase;
PDBTitle: crystal structure of transcriptional coactivator/pterin dehydratase2 from brucella melitensis
3d1ru0a_
100.0 29
Fold:DCoH-like
Superfamily:PCD-like
Family:PCD-like
4d1dcpa_
100.0 30
Fold:DCoH-like
Superfamily:PCD-like
Family:PCD-like
5c2v6uB_
100.0 28
PDB header:lyase
Chain: B: PDB Molecule:pterin-4a-carbinolamine dehydratase;
PDBTitle: high resolution crystal structure of pterin-4a-2 carbinolamine dehydratase from toxoplasma gondii
6d1usma_
99.9 37
Fold:DCoH-like
Superfamily:PCD-like
Family:PCD-like
7c4lowA_
99.9 24
PDB header:unknown function
Chain: A: PDB Molecule:acraf;
PDBTitle: structure and identification of a pterin dehydratase-like protein as a2 rubisco assembly factor in the alpha-carboxysome
8c1z9bA_
61.2 36
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: solution structure of the c1-subdomain of bacillus2 stearothermophilus translation initiation factor if2
9c5mz2I_
59.4 24
PDB header:photosynthesis
Chain: I: PDB Molecule:rubisco small subunit;
PDBTitle: rubisco from thalassiosira antarctica
10d1bwvs_
59.3 24
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
11d1a8ya3
58.0 18
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Calsequestrin
12d1svdm1
55.0 18
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
13d1bxni_
52.9 43
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
14c5nv3P_
51.1 41
PDB header:lyase
Chain: P: PDB Molecule:ribulose bisphosphate carboxylase small chain 1;
PDBTitle: structure of rubisco from rhodobacter sphaeroides in complex with cabp
15d1rbli_
49.6 23
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
16c2ybvN_
48.6 18
PDB header:lyase
Chain: N: PDB Molecule:ribulose bisphosphate carboxylase small subunit;
PDBTitle: structure of rubisco from thermosynechococcus elongatus
17d1gk8i_
48.2 41
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
18d1ir1s_
46.7 32
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
19d1uzhc1
43.6 41
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
20d2v6ai1
42.3 41
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
21d1wdds_
not modelled 42.1 27
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
22d8ruci_
not modelled 41.7 32
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
23d1uzdc1
not modelled 37.4 41
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
24d1ej7s_
not modelled 36.7 36
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
25c1qysA_
not modelled 24.3 19
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
26c3ns6B_
not modelled 22.5 3
PDB header:translation
Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b;
PDBTitle: crystal structure of hte rna recognition motif of yeast eif3b residues2 76-170
27c2jvfA_
not modelled 22.5 12
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
28c3j4jA_
not modelled 20.9 27
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: model of full-length t. thermophilus translation initiation factor 22 refined against its cryo-em density from a 30s initiation complex map
29c4n3gA_
not modelled 20.5 9
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5b-like protein,
PDBTitle: crystal structure of eukaryotic translation initiation factor eif5b2 (870-1116) from chaetomium thermophilum, domains iii and iv
30d1g7sa3
not modelled 19.0 19
Fold:Initiation factor IF2/eIF5b, domain 3
Superfamily:Initiation factor IF2/eIF5b, domain 3
Family:Initiation factor IF2/eIF5b, domain 3
31d1w4ta1
not modelled 18.9 50
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Arylamine N-acetyltransferase
32c2kieA_
not modelled 15.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1;
PDBTitle: a ph domain within ocrl bridges clathrin mediated membrane2 trafficking to phosphoinositide metabolis
33d1mv8a1
not modelled 13.8 13
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
34c4yk1A_
not modelled 13.4 20
PDB header:protein binding
Chain: A: PDB Molecule:bartonella effector protein (bep) substrate of virb t4ss;
PDBTitle: crystal structure of the bid domain of bep6 from bartonella rochalimae
35d1prtc2
not modelled 12.9 20
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Aerolysin/Pertussis toxin (APT) domain
36c2yfwC_
not modelled 12.3 33
PDB header:cell cycle
Chain: C: PDB Molecule:histone h3-like centromeric protein cse4;
PDBTitle: heterotetramer structure of kluyveromyces lactis cse4,h4
37d1dlja1
not modelled 12.2 13
Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
38c3s6eB_
not modelled 12.1 22
PDB header:rna binding protein
Chain: B: PDB Molecule:rna-binding protein 39;
PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution
39c4gicB_
not modelled 12.0 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of a putative histidinol dehydrogenase (target psi-2 014034) from methylococcus capsulatus
40c2hueB_
not modelled 11.6 42
PDB header:dna binding protein
Chain: B: PDB Molecule:histone h3;
PDBTitle: structure of the h3-h4 chaperone asf1 bound to histones h3 and h4
41c5zojE_
not modelled 10.8 19
PDB header:dna binding protein
Chain: E: PDB Molecule:inner nuclear membrane protein man1;
PDBTitle: crystal structure of human smad2-man1 complex
42c4ky3A_
not modelled 10.6 18
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or327;
PDBTitle: three-dimensional structure of the orthorhombic crystal of2 computationally designed insertion domain , northeast structural3 genomics consortium (nesg) target or327
43c2ahqA_
not modelled 10.6 14
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
44d2j0sd1
not modelled 10.3 28
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
45d1sqwa2
not modelled 9.6 25
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Nip7p homolog, N-terminal domain
46c4d10H_
not modelled 9.6 25
PDB header:signaling protein
Chain: H: PDB Molecule:cop9 signalosome complex subunit 8;
PDBTitle: crystal structure of the cop9 signalosome
47c6f0fB_
not modelled 9.5 31
PDB header:chaperone
Chain: B: PDB Molecule:ip2_s;
PDBTitle: crystal structure asf1-ip2_s
48c3wbkB_
not modelled 9.4 13
PDB header:biosynthetic protein
Chain: B: PDB Molecule:eukaryotic translation initiation factor 5b;
PDBTitle: crystal structure analysis of eukaryotic translation initiation factor2 5b and 1a complex
49c2mztA_
not modelled 9.3 22
PDB header:rna binding protein
Chain: A: PDB Molecule:protein hrb1;
PDBTitle: nmr structure of the rrm3 domain of hrb1
50d1prtb2
not modelled 8.9 20
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Aerolysin/Pertussis toxin (APT) domain
51c2jd3B_
not modelled 8.7 26
PDB header:dna binding protein
Chain: B: PDB Molecule:stbb protein;
PDBTitle: parr from plasmid pb171
52c2fhoA_
not modelled 8.6 35
PDB header:rna binding protein
Chain: A: PDB Molecule:spliceosomal protein sf3b155;
PDBTitle: nmr solution structure of the human spliceosomal protein2 complex p14-sf3b155
53d1rk8a_
not modelled 8.5 31
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
54d1tzyc_
not modelled 8.1 42
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
55c3izyP_
not modelled 8.1 33
PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
56c5mmjv_
not modelled 8.1 31
PDB header:ribosome
Chain: V: PDB Molecule:
PDBTitle: structure of the small subunit of the chloroplast ribosome
57c2qt7B_
not modelled 8.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:receptor-type tyrosine-protein phosphatase-like n;
PDBTitle: crystallographic structure of the mature ectodomain of the human2 receptor-type protein-tyrosine phosphatase ia-2 at 1.30 angstroms
58c5l87A_
not modelled 7.7 21
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
59c4kp1A_
not modelled 7.7 13
PDB header:isomerase
Chain: A: PDB Molecule:isopropylmalate/citramalate isomerase large subunit;
PDBTitle: crystal structure of ipm isomerase large subunit from methanococcus2 jannaschii (mj0499)
60d1eqzg_
not modelled 7.5 42
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
61d1o0pa_
not modelled 7.5 19
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
62c3nquA_
not modelled 7.5 25
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of partially trypsinized (cenp-a/h4)2 heterotetramer
63c5aonB_
not modelled 7.4 25
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
64c4kp2A_
not modelled 7.3 13
PDB header:lyase
Chain: A: PDB Molecule:homoaconitase large subunit;
PDBTitle: crystal structure of homoaconitase large subunit from methanococcus2 jannaschii (mj1003)
65d1id3a_
not modelled 7.2 25
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
66c2e44A_
not modelled 7.2 31
PDB header:rna binding protein
Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding
PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3
67c3km3B_
not modelled 7.1 20
PDB header:hydrolase
Chain: B: PDB Molecule:deoxycytidine triphosphate deaminase;
PDBTitle: crystal structure of eoxycytidine triphosphate deaminase from2 anaplasma phagocytophilum at 2.1a resolution
68c2o8kA_
not modelled 7.1 14
PDB header:transcription/dna
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: nmr structure of the sigma-54 rpon domain bound to the-242 promoter element
69c3nqjA_
not modelled 7.0 25
PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of (cenp-a/h4)2 heterotetramer
70c2dnqA_
not modelled 6.7 12
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 4b;
PDBTitle: solution structure of rna binding domain 1 in rna-binding2 protein 30
71d1vpka3
not modelled 6.7 14
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase III, beta subunit
72d1p3ie_
not modelled 6.6 42
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
73c2f9jP_
not modelled 6.5 38
PDB header:rna binding protein
Chain: P: PDB Molecule:splicing factor 3b subunit 1;
PDBTitle: 3.0 angstrom resolution structure of a y22m mutant of the spliceosomal2 protein p14 bound to a region of sf3b155
74d1rz4a1
not modelled 6.5 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
75c3btpB_
not modelled 6.4 38
PDB header:dna binding protein, chaperone
Chain: B: PDB Molecule:protein vire1;
PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding
76c4uqtA_
not modelled 6.4 24
PDB header:translation
Chain: A: PDB Molecule:u2 snrnp component ist3;
PDBTitle: rrm-peptide structure in res complex
77d2dita1
not modelled 6.4 19
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
78d1whza_
not modelled 6.3 25
Fold:dsRBD-like
Superfamily:YcfA/nrd intein domain
Family:YcfA-like
79c4v1ao_
not modelled 6.3 38
PDB header:ribosome
Chain: O: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
80c4kjzD_
not modelled 6.2 46
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor if-2;
PDBTitle: crystal structure of thermus thermophilus if2, apo and gdp-bound forms2 (2-474)
81c6e0cA_
not modelled 6.1 25
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: cryo-em structure of the cenp-a nucleosome (w601) in complex with a2 single chain antibody fragment
82d1fjeb2
not modelled 6.1 12
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
83d1kx5a_
not modelled 6.0 42
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
84c2mt3A_
not modelled 6.0 21
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: structure of -24 dna binding domain of sigma 54 from e.coli
85c5vbdA_
not modelled 6.0 14
PDB header:signaling protein
Chain: A: PDB Molecule:usp9x;
PDBTitle: crystal structure of a putative ubl domain of usp9x
86c6an0A_
not modelled 5.9 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of histidinol dehydrogenase from elizabethkingia2 anophelis
87c4a8xB_
not modelled 5.9 33
PDB header:transcription
Chain: B: PDB Molecule:hook-like, isoform a;
PDBTitle: structure of the core asap complex
88c2jyaA_
not modelled 5.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1810;
PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776
89c2osrA_
not modelled 5.7 27
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 3;
PDBTitle: nmr structure of rrm-2 of yeast npl3 protein
90c5vldC_
not modelled 5.6 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:histidinol dehydrogenase, chloroplastic;
PDBTitle: crystal structure of medicago truncatula l-histidinol dehydrogenase in2 complex with l-histidine and nad+
91c2w85A_
not modelled 5.5 50
PDB header:protein transport
Chain: A: PDB Molecule:peroxisomal membrane anchor protein pex14;
PDBTitle: structure of pex14 in complex with pex19
92c6b4jC_
not modelled 5.4 25
PDB header:transport protein
Chain: C: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm-ddx19b(amppnp) complex
93c2o3dA_
not modelled 5.4 11
PDB header:rna binding protein
Chain: A: PDB Molecule:splicing factor, arginine/serine-rich 1;
PDBTitle: structure of human sf2/asf rna recognition motif 2 (rrm2)
94c4bptC_
not modelled 5.3 38
PDB header:oxidoreductase
Chain: C: PDB Molecule:phenylalanine-4-hydroxylase (pah) (phe-4-monooxygenase);
PDBTitle: structural and thermodynamic insight into phenylalanine2 hydroxylase from the human pathogen legionella pneumophila
95d1oiaa_
not modelled 5.3 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
96c3tcyA_
not modelled 5.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylalanine-4-hydroxylase;
PDBTitle: crystallographic structure of phenylalanine hydroxylase from2 chromobacterium violaceum (cpah) bound to phenylalanine in a site3 distal to the active site
97c2jvoA_
not modelled 5.3 19
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleolar protein 3;
PDBTitle: segmental isotope labeling of npl3
98c6b4fD_
not modelled 5.3 25
PDB header:transport protein
Chain: D: PDB Molecule:nucleoporin like 2;
PDBTitle: crystal structure of human gle1 ctd-nup42 gbm complex
99d1ivta_
not modelled 5.2 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Lamin A/C globular tail domain
Family:Lamin A/C globular tail domain

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