Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1166_(lpqW)_1296157_1298064
DateWed Jul 31 22:05:25 BST 2019
Unique Job ID92522c7ff3d72e4f
SequenceMGVPSPVRRV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.773 Y:67.787 Z:59.017
Model (left) based on template c2grvC_
Top template information
PDB header:biosynthetic protein
Chain: C: PDB Molecule:lpqw;
PDBTitle: crystal structure of lpqw
Confidence and coverage
Confidence:100.0% Coverage: 80%
510 residues ( 80% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2grvC_
100.0 85
PDB header:biosynthetic protein
Chain: C: PDB Molecule:lpqw;
PDBTitle: crystal structure of lpqw
2c4onyB_
100.0 17
PDB header:transport protein
Chain: B: PDB Molecule:extracellular solute-binding protein family 5;
PDBTitle: crystal structure of a abc transporter, periplasmic substrate-binding2 protein from brucella melitensis
3c4oetA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:putative peptide abc-transport system periplasmic peptide-
PDBTitle: crystal structure of nikz from campylobacter jejuni, unliganded form
4c5icqA_
100.0 19
PDB header:periplasmic binding protein
Chain: A: PDB Molecule:methylocystis parvus obbp mbne;
PDBTitle: methanobactin periplasmic binding protein
5c4oerA_
100.0 18
PDB header:transport protein
Chain: A: PDB Molecule:nika protein;
PDBTitle: crystal structure of nika from brucella suis, unliganded form
6d1xoca1
100.0 15
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
7c5isuA_
100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:lmo0135 protein;
PDBTitle: 2.2 angstrom crystal structure of abc transporter substrate binding2 protein ctap (lmo0135) from listeria monocytogenes.
8c3tpaA_
100.0 15
PDB header:heme binding protein
Chain: A: PDB Molecule:heme-binding protein a;
PDBTitle: structure of hbpa2 from haemophilus parasuis
9d1zlqa1
100.0 16
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
10c2wokA_
100.0 21
PDB header:peptide binding protein/peptide
Chain: A: PDB Molecule:clavulanic acid biosynthesis oligopeptide binding protein
PDBTitle: clavulanic acid biosynthesis oligopeptide binding protein 2 complexed2 with bradykinin
11d1dpea_
100.0 16
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
12c2o7jA_
100.0 15
PDB header:sugar binding protein
Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic
PDBTitle: the x-ray crystal structure of a thermophilic cellobiose2 binding protein bound with cellopentaose
13c1ztyA_
100.0 16
PDB header:sugar binding protein, signaling protein
Chain: A: PDB Molecule:chitin oligosaccharide binding protein;
PDBTitle: crystal structure of the chitin oligasaccharide binding2 protein
14c3t66A_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:nickel abc transporter (nickel-binding protein);
PDBTitle: crystal structure of nickel abc transporter from bacillus halodurans
15c3m8uA_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:heme-binding protein a;
PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg)
16c6hlxA_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:agaa;
PDBTitle: structure of the pbp agaa in complex with agropinic acid from2 a.tumefacien r10
17c3o9pA_
100.0 18
PDB header:peptide binding protein/peptide
Chain: A: PDB Molecule:periplasmic murein peptide-binding protein;
PDBTitle: the structure of the escherichia coli murein tripeptide binding2 protein mppa
18c4qfkG_
100.0 16
PDB header:peptide binding protein
Chain: G: PDB Molecule:abc transporter periplasmic peptide-binding protein;
PDBTitle: crystal structure of dipeptide binding protein from pseudoalteromonas2 sp. sm9913
19c5yheA_
100.0 15
PDB header:metal binding protein
Chain: A: PDB Molecule:nickel abc transporter substrate-binding protein;
PDBTitle: the crystal structure of staphylococcus aureus cnta in complex with2 staphylopine and cobalt
20d1jeta_
100.0 17
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
21c6dtfA_
not modelled 100.0 16
PDB header:peptide binding protein
Chain: A: PDB Molecule:periplasmic oligopeptide-binding protein;
PDBTitle: crystal structure of haemophilus influenzae oppa complex with kkk
22c4pfwA_
not modelled 100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate-binding protein;
PDBTitle: crystal structure of mannohexaose bound oligopeptide abc transporter,2 periplasmic oligopeptide-binding protein (tm1226) from thermotoga3 maritima at 2.2 a resolution
23d1uqwa_
not modelled 100.0 15
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
24d1vr5a1
not modelled 100.0 16
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
25c3zs6A_
not modelled 100.0 16
PDB header:peptide binding protein
Chain: A: PDB Molecule:periplasmic oligopeptide-binding protein;
PDBTitle: the structural characterization of burkholderia pseudomallei oppa.
26c5u4oA_
not modelled 100.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:abc transporter substrate-binding protein;
PDBTitle: a 2.05a x-ray structureof a bacterial extracellular solute-binding2 protein, family 5 for bacillus anthracis str. ames
27c4wedA_
not modelled 100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, periplasmic solute-binding protein;
PDBTitle: crystal structure of abc transporter substrate-binding protein from2 sinorhizobium meliloti
28c3ry3B_
not modelled 100.0 15
PDB header:transport protein
Chain: B: PDB Molecule:putative solute-binding protein;
PDBTitle: putative solute-binding protein from yersinia pestis.
29c4zebA_
not modelled 100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein (agrocinopines a
PDBTitle: pbp acca from a. tumefaciens c58 in complex with agrocinopine a
30c2d5wA_
not modelled 100.0 14
PDB header:peptide binding protein
Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein;
PDBTitle: the crystal structure of oligopeptide binding protein from thermus2 thermophilus hb8 complexed with pentapeptide
31c6epzA_
not modelled 100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic alpha-galactoside-binding protein;
PDBTitle: structure of the periplasmic binding protein melb (atu4661) in complex2 with melibiose from agrobacterium fabrum c58
32c3rqtA_
not modelled 100.0 14
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: 1.5 angstrom crystal structure of the complex of ligand binding2 component of abc-type import system from staphylococcus aureus with3 nickel and two histidines
33c3ftoA_
not modelled 100.0 19
PDB header:peptide binding protein
Chain: A: PDB Molecule:oligopeptide-binding protein oppa;
PDBTitle: crystal structure of oppa in a open conformation
34c6i3gA_
not modelled 100.0 15
PDB header:peptide binding protein
Chain: A: PDB Molecule:abc transporter, substrate-binding protein, family 5;
PDBTitle: crystal structure of a putative peptide binding protein appa from2 clostridium difficile
35c4fajA_
not modelled 100.0 18
PDB header:peptide binding protein
Chain: A: PDB Molecule:prgz;
PDBTitle: structure and mode of peptide binding of pheromone receptor prgz
36c6npoA_
not modelled 100.0 16
PDB header:transport protein
Chain: A: PDB Molecule:oligopeptide abc transporter, oligopeptide-binding protein;
PDBTitle: crystal structure of oligopeptide abc transporter from bacillus2 anthracis str. ames (substrate-binding domain)
37c4gl8B_
not modelled 100.0 15
PDB header:protein transport
Chain: B: PDB Molecule:oligopeptide abc transporter oppaiv;
PDBTitle: x-ray crystal structure of a periplasmic oligopeptide-binding2 protein/oligopeptide abc transporter(oppaiv) from borrelia3 burgdorferi
38c5yybA_
not modelled 100.0 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative abc transporter periplasmic binding protein;
PDBTitle: crystal structure of sialic acid binding protein from haemophilus2 ducreyi with neu5gc
39c5ipwA_
not modelled 100.0 14
PDB header:peptide binding protein
Chain: A: PDB Molecule:oligopeptide abc transporter, periplasmic oligopeptide-
PDBTitle: oligopeptide-binding protein oppa
40c5kztB_
not modelled 100.0 12
PDB header:peptide binding protein
Chain: B: PDB Molecule:peptide/nickel transport system substrate-binding protein;
PDBTitle: listeria monocytogenes oppa bound to peptide
41c3lvuB_
not modelled 100.0 21
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding protein;
PDBTitle: crystal structure of abc transporter, periplasmic substrate-binding2 protein spo2066 from silicibacter pomeroyi
42c3pamB_
not modelled 100.0 23
PDB header:transport protein
Chain: B: PDB Molecule:transmembrane protein;
PDBTitle: crystal structure of a domain of transmembrane protein of abc-type2 oligopeptide transport system from bartonella henselae str. houston-1
43c3o6pA_
not modelled 100.0 17
PDB header:protein binding
Chain: A: PDB Molecule:peptide abc transporter, peptide-binding protein;
PDBTitle: crystal structure of peptide abc transporter, peptide-binding protein
44c3chgB_
not modelled 95.6 20
PDB header:ligand binding protein
Chain: B: PDB Molecule:glycine betaine-binding protein;
PDBTitle: the compatible solute-binding protein opuac from bacillus2 subtilis in complex with dmsa
45c3tmgA_
not modelled 93.2 21
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter,
PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
46c3l6gA_
not modelled 92.9 16
PDB header:glycine betaine-binding protein
Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding
PDBTitle: crystal structure of lactococcal opuac in its open conformation
47c2rejA_
not modelled 91.6 21
PDB header:choline-binding protein
Chain: A: PDB Molecule:putative glycine betaine abc transporter protein;
PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
48d1r9la_
not modelled 90.8 11
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
49c6jf1A_
not modelled 90.1 13
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of the substrate binding protein of a methionine2 transporter from streptococcus pneumoniae
50c4q0cA_
not modelled 90.0 16
PDB header:transferase
Chain: A: PDB Molecule:virulence sensor protein bvgs;
PDBTitle: 3.1 a resolution crystal structure of the b. pertussis bvgs2 periplasmic domain
51c4xz6A_
not modelled 82.9 16
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/proline abc transporter, periplasmic
PDBTitle: tmox in complex with tmao
52d1sw5a_
not modelled 81.9 26
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
53c4q5tA_
not modelled 80.9 15
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of an atmb (putative membrane lipoprotein) from2 streptococcus mutans ua159 at 1.91 a resolution
54c3hlyA_
not modelled 79.2 14
PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from synechococcus sp2 q5mzp6_synp6 protein. northeast structural genomics consortium target3 snr135d.
55c3r6uA_
not modelled 77.9 18
PDB header:transport protein
Chain: A: PDB Molecule:choline-binding protein;
PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
56c4oteA_
not modelled 76.6 20
PDB header:protein transport
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of a putative lipoprotein (cd630_1653) from2 clostridium difficile 630 at 2.20 a resolution
57c3up9A_
not modelled 76.2 22
PDB header:methionine-binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative lipoprotein (actodo_00931) from2 actinomyces odontolyticus atcc 17982 at 2.35 a resolution
58c3nohA_
not modelled 75.9 23
PDB header:peptide binding protein
Chain: A: PDB Molecule:putative peptide binding protein;
PDBTitle: crystal structure of a putative peptide binding protein (rumgna_00914)2 from ruminococcus gnavus atcc 29149 at 1.60 a resolution
59c6esvA_
not modelled 75.7 10
PDB header:signaling protein
Chain: A: PDB Molecule:putative periplasmic phosphite-binding-like protein (pbl)
PDBTitle: structure of the phosphate-bound form of aiox from rhizobium sp. str.2 nt-26
60d2p0la1
not modelled 75.6 10
Fold:Class II aaRS and biotin synthetases
Superfamily:Class II aaRS and biotin synthetases
Family:LplA-like
61c3gxaA_
not modelled 74.2 16
PDB header:protein binding
Chain: A: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of gna1946
62d1e5da1
not modelled 74.2 13
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
63c4ntlA_
not modelled 72.6 17
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein, yaec family;
PDBTitle: crystal structure of a lipoprotein, yaec family (ef3198) from2 enterococcus faecalis v583 at 1.80 a resolution
64c5b3kA_
not modelled 72.6 17
PDB header:electron transport
Chain: A: PDB Molecule:uncharacterized protein pa3435;
PDBTitle: c101a mutant of flavodoxin from pseudomonas aeruginosa
65d1ycga1
not modelled 71.6 13
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
66c3ir1F_
not modelled 68.6 16
PDB header:protein binding
Chain: F: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of lipoprotein gna1946 from neisseria meningitidis
67c5o2kE_
not modelled 67.0 11
PDB header:transport protein
Chain: E: PDB Molecule:probable phosphite transport system-binding protein ptxb;
PDBTitle: native apo-structure of pseudomonas stutzeri ptxb to 2.1 a resolution
68c3f6sI_
not modelled 66.2 10
PDB header:electron transport
Chain: I: PDB Molecule:flavodoxin;
PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin alternate2 conformers
69c4ef2A_
not modelled 65.8 19
PDB header:methionine-binding protein
Chain: A: PDB Molecule:pheromone cob1/lipoprotein, yaec family;
PDBTitle: crystal structure of a pheromone cob1 precursor/lipoprotein, yaec2 family (ef2496) from enterococcus faecalis v583 at 2.10 a resolution
70d1xs5a_
not modelled 64.0 12
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
71c4gotA_
not modelled 61.8 26
PDB header:lipid binding protein
Chain: A: PDB Molecule:methionine-binding lipoprotein metq;
PDBTitle: crystal structure of a putative methionine-binding lipoprotein2 (bsu32730) from bacillus subtilis subsp. subtilis str. 168 at 1.95 a3 resolution
72c4z7eB_
not modelled 61.4 11
PDB header:transport protein
Chain: B: PDB Molecule:lmo1422 protein;
PDBTitle: soluble binding domain of lmo1422 abc-transporter
73c3woaA_
not modelled 61.2 7
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
74c4wepA_
not modelled 60.0 12
PDB header:transport protein
Chain: A: PDB Molecule:putative osmoprotectant uptake system substrate-binding
PDBTitle: apo yehz from escerichia coli
75c4h2dB_
not modelled 59.4 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent diflavin oxidoreductase 1;
PDBTitle: crystal structure of ndor1
76c4k3fA_
not modelled 59.0 13
PDB header:transport protein
Chain: A: PDB Molecule:probable tonb-dependent receptor;
PDBTitle: crystal structure of a putative tonb-dependent receptor (pa5505) from2 pseudomonas aeruginosa pao1 at 1.60 a resolution
77c5vegC_
not modelled 57.0 17
PDB header:electron transport
Chain: C: PDB Molecule:flavodoxin;
PDBTitle: structure of a short-chain flavodoxin associated with a non-canonical2 pdu bacterial microcompartment
78c6onpA_
not modelled 56.8 11
PDB header:unknown function
Chain: A: PDB Molecule:periplasmic binding protein xoxj;
PDBTitle: crystal structure of periplasmic binding protein xoxj from2 methylobacterium extorquens am1
79c3qslA_
not modelled 56.3 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50
80c4ne4A_
not modelled 56.0 13
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, substrate binding protein
PDBTitle: crystal structure of abc transporter substrate binding protein prox2 from agrobacterium tumefaciens cocrystalized with btb
81c2zykA_
not modelled 53.3 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:solute-binding protein;
PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin
82d1tlla2
not modelled 52.1 13
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
83d1v6ta_
not modelled 50.7 24
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:LamB/YcsF-like
84c4ib2B_
not modelled 48.5 19
PDB header:transport protein
Chain: B: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of a putative lipoprotein (rumgna_00858) from2 ruminococcus gnavus atcc 29149 at 1.76 a resolution
85d1f4pa_
not modelled 48.4 14
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
86c3pppA_
not modelled 48.0 25
PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein;
PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
87c4esxA_
not modelled 45.4 10
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine biosynthesis enzyme thi13;
PDBTitle: crystal structure of c. albicans thi5 complexed with plp
88c4heqB_
not modelled 45.4 22
PDB header:electron transport
Chain: B: PDB Molecule:flavodoxin;
PDBTitle: the crystal structure of flavodoxin from desulfovibrio gigas
89c2m6rA_
not modelled 45.2 20
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: apo_yqca
90c4n82B_
not modelled 44.5 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:ribonucleotide reductase;
PDBTitle: x-ray crystal structure of streptococcus sanguinis nrdiox
91c6h0cA_
not modelled 44.4 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: flv1 flavodiiron core from synechocystis sp. pcc6803
92c5hqjA_
not modelled 44.1 13
PDB header:solute-binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of abc transporter solute binding protein b1g1h72 from burkholderia graminis c4d1m, target efi-511179, in complex with3 d-arabinose
93c5me4A_
not modelled 43.4 19
PDB header:transport protein
Chain: A: PDB Molecule:probable phosphite transport system-binding protein htxb;
PDBTitle: the structure of htxb from pseudomonas stutzeri in complex with2 hypophosphite to 1.52 a resolution
94c4r6kA_
not modelled 42.7 10
PDB header:transport protein
Chain: A: PDB Molecule:solute-binding protein;
PDBTitle: crystal structure of abc transporter substrate-binding protein yeso2 from bacillus subtilis, target efi-510761, an open conformation
95d1p99a_
not modelled 41.3 25
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
96c1p99A_
not modelled 41.3 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg110;
PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus aureus
97c3p7iA_
not modelled 41.1 10
PDB header:transport protein
Chain: A: PDB Molecule:phnd, subunit of alkylphosphonate abc transporter;
PDBTitle: crystal structure of escherichia coli phnd in complex with 2-2 aminoethyl phosphonate
98c3k2dA_
not modelled 40.3 12
PDB header:immune system
Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component;
PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
99c5widB_
not modelled 40.3 13
PDB header:flavoprotein
Chain: B: PDB Molecule:flavodoxin;
PDBTitle: structure of a flavodoxin from the domain archaea
100c3ombA_
not modelled 40.2 13
PDB header:transport protein
Chain: A: PDB Molecule:extracellular solute-binding protein, family 1;
PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis
101d2fz5a1
not modelled 39.8 9
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
102d1ykga1
not modelled 39.4 17
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
103c6detA_
not modelled 39.1 11
PDB header:transport protein
Chain: A: PDB Molecule:tv2483;
PDBTitle: the crystal structure of tv2483 bound to l-arginine
104c1x2gB_
not modelled 38.1 9
PDB header:ligase
Chain: B: PDB Molecule:lipoate-protein ligase a;
PDBTitle: crystal structure of lipate-protein ligase a from2 escherichia coli
105c4qhqA_
not modelled 37.8 9
PDB header:transport protein
Chain: A: PDB Molecule:lipoprotein;
PDBTitle: the structure of a nutrient binding protein from burkholderia2 cenocepacia bound to methionine
106c2x26A_
not modelled 37.5 13
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein;
PDBTitle: crystal structure of the periplasmic aliphatic sulphonate binding2 protein ssua from escherichia coli
107c5jvbB_
not modelled 37.3 8
PDB header:transport protein
Chain: B: PDB Molecule:phosphonate abc transporter, periplasmic phosphonate-
PDBTitle: 1.95a resolution structure of ptxb from trichodesmium erythraeum2 ims101 in complex with phosphite
108d1us5a_
not modelled 37.2 21
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
109c4eq9A_
not modelled 36.4 7
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate-binding protein-amino acid
PDBTitle: 1.4 angstrom crystal structure of abc transporter glutathione-binding2 protein gsht from streptococcus pneumoniae strain canada mdr_19a in3 complex with glutathione
110c3fniA_
not modelled 36.2 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative diflavin flavoprotein a 3;
PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
111c3zkkA_
not modelled 36.2 10
PDB header:transport protein
Chain: A: PDB Molecule:xos binding protein;
PDBTitle: structure of the xylo-oligosaccharide specific solute binding protein2 from bifidobacterium animalis subsp. lactis bl-04 in complex with3 xylotetraose
112c2ek8A_
not modelled 35.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase;
PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1
113d5nula_
not modelled 35.4 10
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
114c2z8fB_
not modelled 35.1 13
PDB header:sugar binding protein
Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate-
PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose
115c4yo3G_
not modelled 33.7 24
PDB header:transport protein
Chain: G: PDB Molecule:tssa;
PDBTitle: enteroaggregative escherichia coli tssa n-terminal fragment
116c3i6vA_
not modelled 33.3 12
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic his/glu/gln/arg/opine family-binding protein;
PDBTitle: crystal structure of a periplasmic his/glu/gln/arg/opine family-2 binding protein from silicibacter pomeroyi in complex with lysine
117c3ix1A_
not modelled 32.8 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding
PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
118c3ix1B_
not modelled 32.8 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding
PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
119c2hnbA_
not modelled 32.4 16
PDB header:electron transport
Chain: A: PDB Molecule:protein mioc;
PDBTitle: solution structure of a bacterial holo-flavodoxin
120c3kzgB_
not modelled 32.0 20
PDB header:transport protein
Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding
PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below