Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1172c_(PE12)_1301760_1302686
DateWed Jul 31 22:05:26 BST 2019
Unique Job IDcfc04f117e946ae5
SequenceMSFVFAAPEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.967 Y:35.740 Z:53.071
Model (left) based on template c5xfsA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 25%
78 residues ( 25% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsA_



100.0 49
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2d2g38a1



100.0 32
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PE
3c2g38A_



100.0 32
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
4c4wj2A_



83.1 16
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
5c3gvmA_



58.2 14
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
6c4iogD_



39.4 14
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
7c2h3oA_



38.2 38
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: structure of merft, a membrane protein with two trans-2 membrane helices
8d1wa8a1



33.2 13
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
9c1wazA_



22.1 38
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: nmr structure determination of the bacterial mercury transporter,2 merf, in micelles
10c2m67A_



21.7 36
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
11c2vs0B_



21.2 11
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
12c3zbhC_



20.9 14
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
13c6cfzH_



18.2 17
PDB header:nuclear protein
Chain: H: PDB Molecule:dam1;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
14c2lj2A_



16.7 36
PDB header:membrane protein
Chain: A: PDB Molecule:merf;
PDBTitle: integral membrane core domain of the mercury transporter merf in lipid2 bilayer membranes
15c4qncA_



15.3 21
PDB header:membrane protein
Chain: A: PDB Molecule:chemical transport protein;
PDBTitle: crystal structure of a semisweet in an occluded state
16d1vqow1



14.0 24
Fold:Ribosomal protein L30p/L7e
Superfamily:Ribosomal protein L30p/L7e
Family:Ribosomal protein L30p/L7e
17c5iqjB_



13.4 50
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: 1.9 angstrom crystal structure of protein with unknown function from2 vibrio cholerae.
18c3iz5e_



13.0 47
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein l11 (l5p);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
19c3j3bF_



12.0 35
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the human 60s ribosomal proteins
20c6d5fF_



11.4 60
PDB header:virus
Chain: F: PDB Molecule:fimbrial protein;
PDBTitle: cryo-em reconstruction of membrane-enveloped filamentous virus sfv12 (sulfolobus filamentous virus 1)
21c3j39F_



not modelled 11.4 29
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
22c3zf7w_



not modelled 11.3 41
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l23, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
23c3dyuB_



not modelled 11.3 24
PDB header:transport protein
Chain: B: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of snx9px-bar (230-595), h32
24c2zkrw_



not modelled 10.9 33
PDB header:ribosomal protein/rna
Chain: W: PDB Molecule:rna expansion segment es10;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
25d1lghb_



not modelled 10.8 38
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
26c3j21Y_



not modelled 10.7 6
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l30p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
27c3j66s_



not modelled 10.4 24
PDB header:ribosome
Chain: S: PDB Molecule:
PDBTitle: arx1 pre-60s particle. this entry contains the alternative position2 for rlp7.
28c3onjA_



not modelled 10.3 19
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
29c3izce_



not modelled 9.3 41
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein rpl11 (l5p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
30c3fozB_



not modelled 9.0 23
PDB header:transferase/rna
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe)
31d1xmba2



not modelled 8.8 29
Fold:Ferredoxin-like
Superfamily:Bacterial exopeptidase dimerisation domain
Family:Bacterial exopeptidase dimerisation domain
32c4a1cV_



not modelled 8.6 29
PDB header:ribosome
Chain: V: PDB Molecule:60s ribosomal protein l7;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4.
33d1p17b_



not modelled 8.4 29
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
34c4ud1B_



not modelled 7.8 67
PDB header:viral protein
Chain: B: PDB Molecule:n protein;
PDBTitle: structure of the n terminal domain of the mers cov nucleocapsid
35c4lwsA_



not modelled 7.6 17
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
36c5n4kA_



not modelled 7.2 83
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: n-terminal domain of a human coronavirus nl63 nucleocapsid protein
37c3jywF_



not modelled 7.1 41
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
38d2bxxa1



not modelled 7.0 67
Fold:Coronavirus RNA-binding domain
Superfamily:Coronavirus RNA-binding domain
Family:Coronavirus RNA-binding domain
39c4j72B_



not modelled 6.9 22
PDB header:transferase
Chain: B: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
40d2a5yb2



not modelled 6.8 38
Fold:DEATH domain
Superfamily:DEATH domain
Family:Caspase recruitment domain, CARD
41c3crqA_



not modelled 6.6 22
PDB header:transferase
Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate
PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
42d2geca1



not modelled 6.6 67
Fold:Coronavirus RNA-binding domain
Superfamily:Coronavirus RNA-binding domain
Family:Coronavirus RNA-binding domain
43c2m7xA_



not modelled 6.5 64
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: structural and functional analysis of transmembrane segment iv of the2 salt tolerance protein sod2
44d1sska_



not modelled 6.5 83
Fold:Coronavirus RNA-binding domain
Superfamily:Coronavirus RNA-binding domain
Family:Coronavirus RNA-binding domain
45c3exaD_



not modelled 6.3 27
PDB header:transferase
Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: crystal structure of the full-length trna isopentenylpyrophosphate2 transferase (bh2366) from bacillus halodurans, northeast structural3 genomics consortium target bhr41.
46c5ireD_



not modelled 6.2 38
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
47c4g7xA_



not modelled 6.2 67
PDB header:protein binding/protein binding
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a complex between the ctxphi piii n-terminal2 domain and the vibrio cholerae tola c-terminal domain
48c1s1iF_



not modelled 6.0 41
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
49c3hd4A_



not modelled 6.0 83
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: mhv nucleocapsid protein ntd
50c5mlc8_



not modelled 5.9 71
PDB header:ribosome
Chain: 8: PDB Molecule:psrp6, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
51c5mmi7_



not modelled 5.8 71
PDB header:ribosome
Chain: 7: PDB Molecule:50s ribosomal protein 6, chloroplastic;
PDBTitle: structure of the large subunit of the chloroplast ribosome
52c1yfzA_



not modelled 5.8 43
PDB header:transferase
Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase;
PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis
53d1yfza1



not modelled 5.8 43
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
54c3fhkF_



not modelled 5.8 31
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:upf0403 protein yphp;
PDBTitle: crystal structure of apc1446, b.subtilis yphp disulfide isomerase
55d2o8ra1



not modelled 5.8 21
Fold:Spectrin repeat-like
Superfamily:PPK N-terminal domain-like
Family:PPK N-terminal domain-like
56c4g7wB_



not modelled 5.7 67
PDB header:protein binding
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of the minor coat protein2 piii from ctxphi
57c2uwjG_



not modelled 5.6 42
PDB header:chaperone
Chain: G: PDB Molecule:type iii export protein pscg;
PDBTitle: structure of the heterotrimeric complex which regulates type iii2 secretion needle formation
58c4jzaB_



not modelled 5.5 67
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a legionella phosphoinositide phosphatase:2 insights into lipid metabolism in pathogen host interaction
59c4j72A_



not modelled 5.5 22
PDB header:transferase
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase

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