Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1174c_(TB8.4)_1305674_1306006
DateWed Jul 31 22:05:26 BST 2019
Unique Job IDee86ad3944a52f81
SequenceMRLSLTALSA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.719 Y:26.859 Z:66.611
Model (left) based on template c4clvB_
Top template information
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
Confidence and coverage
Confidence: 53.5% Coverage: 66%
73 residues ( 66% of your sequence) have been modelled with 53.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4clvB_



53.5 15
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
2c2n2aA_



50.5 24
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
3d1g7da_



44.0 23
Fold:ERP29 C domain-like
Superfamily:ERP29 C domain-like
Family:ERP29 C domain-like
4c1vw4a_



38.4 23
PDB header:ribosome
Chain: A: PDB Molecule:
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
5c5k57A_



27.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:protein ddi1 homolog 2;
PDBTitle: hdd domain from human ddi2
6c5xnlX_



24.9 46
PDB header:membrane protein
Chain: X: PDB Molecule:photosystem ii reaction center protein x;
PDBTitle: structure of stacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
7d2c0ga1



24.2 19
Fold:ERP29 C domain-like
Superfamily:ERP29 C domain-like
Family:ERP29 C domain-like
8c3jcux_



20.2 39
PDB header:membrane protein
Chain: X: PDB Molecule:photosystem ii reaction center x protein;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
9c3jcuX_



20.2 39
PDB header:membrane protein
Chain: X: PDB Molecule:photosystem ii reaction center x protein;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
10d1kbhb_



17.0 33
Fold:Nuclear receptor coactivator interlocking domain
Superfamily:Nuclear receptor coactivator interlocking domain
Family:Nuclear receptor coactivator interlocking domain
11c1zhcA_



14.9 13
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein hp1242;
PDBTitle: solution structure of hp1242 from helicobacter pylori
12c3mayE_



14.0 14
PDB header:heme-binding protein
Chain: E: PDB Molecule:possible exported protein;
PDBTitle: crystal structure of a secreted mycobacterium tuberculosis heme-2 binding protein
13c4cvoA_



13.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:dna excision repair protein ercc-6;
PDBTitle: crystal structure of the n-terminal colied-coil domain of human dna2 excision repair protein ercc-6
14c5frgA_



13.7 20
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
15c2mnsA_



12.4 78
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p15;
PDBTitle: solution nmr structure of the reovirus p15 fusion-associated small2 transmembrane (fast) protein fusion-inducing lipid packing sensor3 (flips) motif in dodecyl phosphocholine (dpc) micelles
16c1tqeY_



10.0 38
PDB header:transcription/protein binding/dna
Chain: Y: PDB Molecule:histone deacetylase 9;
PDBTitle: mechanism of recruitment of class ii histone deacetylases by myocyte2 enhancer factor-2
17c1tqeX_



10.0 38
PDB header:transcription/protein binding/dna
Chain: X: PDB Molecule:histone deacetylase 9;
PDBTitle: mechanism of recruitment of class ii histone deacetylases by myocyte2 enhancer factor-2
18c2kaxA_



10.0 11
PDB header:metal binding protein
Chain: A: PDB Molecule:protein s100-a5;
PDBTitle: solution structure and dynamics of s100a5 in the apo and2 ca2+ -bound states
19c2l9vA_



9.7 18
PDB header:rna binding protein
Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a;
PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state
20d1a4pa_



9.4 22
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
21c5nr5A_



not modelled 9.2 53
PDB header:dna binding protein
Chain: A: PDB Molecule:mata protein;
PDBTitle: nmr structure and 1h, 13c and 15n signal assignments for dictyostelium2 discoideum mata protein
22d1e8aa_



not modelled 8.8 17
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
23c5j1hB_



not modelled 8.2 26
PDB header:structural protein
Chain: B: PDB Molecule:plectin,plectin;
PDBTitle: structure of the spectrin repeats 5 and 6 of the plakin domain of2 plectin
24c5furK_



not modelled 7.6 20
PDB header:transcription
Chain: K: PDB Molecule:transcription initiation factor tfiid subunit 6;
PDBTitle: structure of human tfiid-iia bound to core promoter dna
25c2llvA_



not modelled 7.4 20
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein sti1;
PDBTitle: solution structure of the yeast sti1 dp1 domain
26d1zfsa1



not modelled 7.1 28
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
27d1wd3a1



not modelled 6.9 52
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Alpha-L-arabinofuranosidase B, N-terminal domain
28c5nr6A_



not modelled 6.9 40
PDB header:dna binding protein
Chain: A: PDB Molecule:matb protein;
PDBTitle: nmr structure and 1h, 13c and 15n signal assignments for dictyostelium2 discoidans matb protein s71a mutant
29c2yeqA_



not modelled 6.8 67
PDB header:hydrolase
Chain: A: PDB Molecule:alkaline phosphatase d;
PDBTitle: structure of phod
30d1hyoa1



not modelled 6.6 24
Fold:SH3-like barrel
Superfamily:Fumarylacetoacetate hydrolase, FAH, N-terminal domain
Family:Fumarylacetoacetate hydrolase, FAH, N-terminal domain
31c2f49C_



not modelled 6.5 41
PDB header:transferase
Chain: C: PDB Molecule:ste5 peptide;
PDBTitle: crystal structure of fus3 in complex with a ste5 peptide
32c2ke4A_



not modelled 6.2 18
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
33c3eabK_



not modelled 5.9 60
PDB header:cell cycle
Chain: K: PDB Molecule:chmp1b;
PDBTitle: crystal structure of spastin mit in complex with escrt iii
34d1ksoa_



not modelled 5.8 17
Fold:EF Hand-like
Superfamily:EF-hand
Family:S100 proteins
35c4uetA_



not modelled 5.7 28
PDB header:retinol-binding protein
Chain: A: PDB Molecule:nematode fatty acid retinoid binding protein;
PDBTitle: diversity in the structures and ligand binding sites among2 the fatty acid and retinol binding proteins of nematodes3 revealed by na-far-1 from necator americanus
36c2y5iF_



not modelled 5.6 22
PDB header:metal-binding protein
Chain: F: PDB Molecule:s100 calcium binding protein z;
PDBTitle: s100z from zebrafish in complex with calcium
37c6iczX_



not modelled 5.4 44
PDB header:splicing
Chain: X: PDB Molecule:prkr-interacting protein 1;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
38c2d44A_



not modelled 5.4 52
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-arabinofuranosidase b;
PDBTitle: crystal structure of arabinofuranosidase complexed with2 arabinofuranosyl-alpha-1,2-xylobiose
39c1odpA_



not modelled 5.4 36
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
40c1odqA_



not modelled 5.4 36
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
41c1odrA_



not modelled 5.4 36
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40

Binding site prediction 

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