Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1182_(papA3)_1320041_1321459
DateWed Jul 31 22:05:27 BST 2019
Unique Job IDe913c46500c2ff70
SequenceMLRVGPLTIG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:51.990 Y:69.408 Z:70.576
Model (left) based on template c6aefB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
Confidence and coverage
Confidence:100.0% Coverage: 97%
458 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6aefB_



100.0 53
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
2c6n8eA_



100.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:holo-obif1;
PDBTitle: crystal structure of holo-obif1, a five domain nonribosomal peptide2 synthetase from burkholderia diffusa
3c2vsqA_



100.0 14
PDB header:ligase
Chain: A: PDB Molecule:surfactin synthetase subunit 3;
PDBTitle: structure of surfactin a synthetase c (srfa-c), a nonribosomal peptide2 synthetase termination module
4c4zxiA_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: crystal structure of holo-ab3403 a four domain nonribosomal peptide2 synthetase bound to amp and glycine
5c6p1jA_



100.0 16
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo2;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo2 serine module
6c5u89A_



100.0 15
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:amino acid adenylation domain protein;
PDBTitle: crystal structure of a cross-module fragment from the dimodular nrps2 dhbf
7c5t81A_



100.0 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:epob;
PDBTitle: rhombohedral crystal form of the epob nrps cyclization-docking2 bidomain from sorangium cellulosum
8c4tx3B_



100.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide synthetase, module 7;
PDBTitle: complex of the x-domain and oxyb from teicoplanin biosynthesis
9c2jgpA_



100.0 14
PDB header:ligase
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: structure of the tycc5-6 pcp-c bidomain of the tyrocidine synthetase2 tycc
10c6m7lB_



100.0 13
PDB header:biosynthetic protein
Chain: B: PDB Molecule:putative non-ribosomal peptide synthetase;
PDBTitle: complex of oxya with the x-domain from gpa biosynthesis
11c6cgoB_



100.0 15
PDB header:biosynthetic protein
Chain: B: PDB Molecule:condensation domain protein;
PDBTitle: molecular basis for condensation domain-mediated chain release from2 the enacyloxin polyketide synthase
12c4zxjA_



100.0 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: crystal structure of holo-entf a nonribosomal peptide synthetase in2 the thioester-forming conformation
13c6ozvA_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo1;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo1 serine module in3 complex with amp
14c2xhgA_



100.0 13
PDB header:isomerase
Chain: A: PDB Molecule:tyrocidine synthetase a;
PDBTitle: crystal structure of the epimerization domain from the initiation2 module of tyrocidine biosynthesis
15c5m6pB_



100.0 12
PDB header:isomerase
Chain: B: PDB Molecule:tyrocidine synthase 2;
PDBTitle: crystal structure of the epimerization domain from module 3 of2 tyrocidine synthetase b, tycb3(e)
16c5t3eA_



100.0 11
PDB header:ligase
Chain: A: PDB Molecule:bacillamide synthetase heterocyclization domain;
PDBTitle: crystal structure of a nonribosomal peptide synthetase2 heterocyclization domain.
17c6ad3A_



100.0 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:lovastatin nonaketide synthase moka;
PDBTitle: structural characterization of the condensation domain from monacolin2 k polyketide synthase moka
18c5ja2A_



100.0 12
PDB header:ligase
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: entf, a terminal nonribosomal peptide synthetase module bound to the2 non-native mbth-like protein pa2412
19c4znmB_



100.0 15
PDB header:ligase
Chain: B: PDB Molecule:c-domain type ii peptide synthetase;
PDBTitle: crystal structure of sgcc5 protein from streptomyces globisporus (apo2 form)
20c4jn3B_



100.0 14
PDB header:biosynthetic protein
Chain: B: PDB Molecule:cda peptide synthetase i;
PDBTitle: crystal structures of the first condensation domain of the cda2 synthetase
21c1l5aA_



not modelled 100.0 11
PDB header:biosynthetic protein
Chain: A: PDB Molecule:amide synthase;
PDBTitle: crystal structure of vibh, an nrps condensation enzyme
22c5dijA_



not modelled 100.0 14
PDB header:unknown function
Chain: A: PDB Molecule:tqaa;
PDBTitle: the crystal structure of ct
23c4hvmC_



not modelled 100.0 14
PDB header:biosynthetic protein
Chain: C: PDB Molecule:tlmii;
PDBTitle: crystal structure of tallysomycin biosynthesis protein tlmii
24c3fotA_



not modelled 100.0 10
PDB header:transferase
Chain: A: PDB Molecule:15-o-acetyltransferase;
PDBTitle: structural and functional characterization of tri3 trichothecene 15-o-2 acetyltransferase from fusarium sporotrichioides
25c1q9jA_



not modelled 100.0 16
PDB header:ligase
Chain: A: PDB Molecule:polyketide synthase associated protein 5;
PDBTitle: structure of polyketide synthase associated protein 5 from2 mycobacterium tuberculosis
26c6chjB_



not modelled 100.0 10
PDB header:transferase
Chain: B: PDB Molecule:diacylglycerol o-acyltransferase;
PDBTitle: wax ester synthase/diacylglycerol acyltransferase from marinobacter2 aquaeolei vt8
27d1l5aa2



not modelled 100.0 11
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
28d1l5aa1



not modelled 100.0 11
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
29c6dd2A_



not modelled 100.0 10
PDB header:transferase
Chain: A: PDB Molecule:probable hydroxycinnamoyl transferase;
PDBTitle: crystal structure of selaginella moellendorffii hct
30d1q9ja1



not modelled 99.9 16
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
31c4g0bA_



not modelled 99.9 12
PDB header:transferase
Chain: A: PDB Molecule:hydroxycinnamoyl-coa shikimate/quinate
PDBTitle: structure of native hct from coffea canephora
32d1q9ja2



not modelled 99.9 13
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
33c2e1uA_



not modelled 99.8 8
PDB header:transferase
Chain: A: PDB Molecule:acyl transferase;
PDBTitle: crystal structure of dendranthema morifolium dmat
34c2bghA_



not modelled 99.8 12
PDB header:transferase
Chain: A: PDB Molecule:vinorine synthase;
PDBTitle: crystal structure of vinorine synthase
35c6eqoB_



not modelled 99.7 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:acetyl-coenzyme a synthetase;
PDBTitle: tri-functional propionyl-coa synthase of erythrobacter sp. nap1 with2 bound nadp+ and phosphomethylphosphonic acid adenylate ester
36c2xr7A_



not modelled 99.7 9
PDB header:transferase
Chain: A: PDB Molecule:malonyltransferase;
PDBTitle: crystal structure of nicotiana tabacum malonyltransferase (ntmat1)2 complexed with malonyl-coa
37c5es8A_



not modelled 99.5 9
PDB header:ligase
Chain: A: PDB Molecule:linear gramicidin synthetase subunit a;
PDBTitle: crystal structure of the initiation module of lgra in the thiolation2 state
38c4ke4A_



not modelled 99.4 12
PDB header:transferase
Chain: A: PDB Molecule:hydroxycinnamoyl-coa:shikimate hydroxycinnamoyl
PDBTitle: elucidation of the structure and reaction mechanism of sorghum bicolor2 hydroxycinnamoyltransferase and its structural relationship to other3 coa-dependent transferases and synthases
39c3b2sA_



not modelled 99.3 7
PDB header:transferase
Chain: A: PDB Molecule:trichothecene 3-o-acetyltransferase;
PDBTitle: crystal structure of f. graminearum tri101 complexed with coenzyme a2 and deoxynivalenol
40c2zbaD_



not modelled 99.1 8
PDB header:transferase
Chain: D: PDB Molecule:trichothecene 3-o-acetyltransferase;
PDBTitle: crystal structure of f. sporotrichioides tri101 complexed with2 coenzyme a and t-2
41c2i9dC_



not modelled 90.5 7
PDB header:transferase
Chain: C: PDB Molecule:chloramphenicol acetyltransferase;
PDBTitle: chloramphenicol acetyltransferase
42d1q23a_



not modelled 88.2 9
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
43d3claa_



not modelled 65.9 8
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
44c3b8kA_



not modelled 63.6 11
PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase;
PDBTitle: structure of the truncated human dihydrolipoyl acetyltransferase (e2)
45d1nija2



not modelled 59.5 16
Fold:Hypothetical protein YjiA, C-terminal domain
Superfamily:Hypothetical protein YjiA, C-terminal domain
Family:Hypothetical protein YjiA, C-terminal domain
46c3l60A_



not modelled 51.1 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:branched-chain alpha-keto acid dehydrogenase;
PDBTitle: crystal structure of branched-chain alpha-keto acid dehydrogenase2 subunit e2 from mycobacterium tuberculosis
47c5wmmA_



not modelled 37.2 9
PDB header:biosynthetic protein
Chain: A: PDB Molecule:nrps;
PDBTitle: crystal structure of an adenylation domain interrupted by a2 methylation domain (ama4) from nonribosomal peptide synthetase tios
48d1dpba_



not modelled 29.7 12
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
49d1b5sa_



not modelled 29.1 14
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
50c3maeA_



not modelled 26.0 7
PDB header:transferase
Chain: A: PDB Molecule:2-oxoisovalerate dehydrogenase e2 component,
PDBTitle: crystal structure of probable dihydrolipoamide acetyltransferase from2 listeria monocytogenes 4b f2365
51c1vs3B_



not modelled 23.5 21
PDB header:isomerase
Chain: B: PDB Molecule:trna pseudouridine synthase a;
PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8
52c4n72B_



not modelled 19.0 8
PDB header:transferase
Chain: B: PDB Molecule:pyruvate dehydrogenase (dihydrolipoyltransacetylase
PDBTitle: catalytic domain from dihydrolipoamide acetyltransferase of pyruvate2 dehydrogenase from escherichia coli
53c6h60A_



not modelled 13.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyruvate dehydrogenase protein x component, mitochondrial;
PDBTitle: pseudo-atomic structural model of the e3bp component of the human2 pyruvate dehydrogenase multienzyme complex
54d1dj0a_



not modelled 13.5 13
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase I TruA
55c5ti8A_



not modelled 11.8 8
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase from pseudomonas
56c2p0yA_



not modelled 11.0 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein lp_0780;
PDBTitle: crystal structure of q88yi3_lacpl from lactobacillus plantarum.2 northeast structural genomics consortium target lpr6
57c1nijA_



not modelled 10.8 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yjia;
PDBTitle: yjia protein
58d2ay0a1



not modelled 10.8 12
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:PutA pre-N-terminal region-like
59d1nm8a2



not modelled 8.9 7
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
60c5hypB_



not modelled 8.9 22
PDB header:immune system
Chain: B: PDB Molecule:m28 protein;
PDBTitle: structure of human c4b-binding protein alpha cain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m283 protein
61c2k5jB_



not modelled 8.8 7
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
62d1t1ua2



not modelled 8.3 11
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
63d1scza_



not modelled 8.2 10
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:CAT-like
64c2ii4C_



not modelled 7.9 13
PDB header:transferase
Chain: C: PDB Molecule:lipoamide acyltransferase component of branched-chain
PDBTitle: crystal structure of a cubic core of the dihydrolipoamide2 acyltransferase (e2b) component in the branched-chain alpha-ketoacid3 dehydrogenase complex (bckdc), coenzyme a-bound form
65d2bm0a4



not modelled 7.7 14
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
66c6iyaD_



not modelled 7.5 12
PDB header:antitoxin
Chain: D: PDB Molecule:transcriptional regulator copg family;
PDBTitle: structure of the dna binding domain of antitoxin copaso
67d2dy1a4



not modelled 7.4 11
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
68d1ndba2



not modelled 7.0 7
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:Choline/Carnitine O-acyltransferase
69c2fyoA_



not modelled 6.5 6
PDB header:transferase
Chain: A: PDB Molecule:carnitine o-palmitoyltransferase ii, mitochondrial;
PDBTitle: crystal structure of rat carnitine palmitoyltransferase 2 in space2 group p43212
70c3dodA_



not modelled 6.4 12
PDB header:transferase
Chain: A: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystal structure of plp bound 7,8-diaminopelargonic acid synthase in2 bacillus subtilis
71c6io1B_



not modelled 6.3 18
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of a novel thermostable (s)-enantioselective omega-2 transaminase from thermomicrobium roseum
72c1o7dC_



not modelled 6.2 33
PDB header:hydrolase
Chain: C: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
73c2rbfB_



not modelled 5.6 12
PDB header:oxidoreductase/dna
Chain: B: PDB Molecule:bifunctional protein puta;
PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)
74c3rqcB_



not modelled 5.5 9
PDB header:transferase
Chain: B: PDB Molecule:probable lipoamide acyltransferase;
PDBTitle: crystal structure of the catalytic core of the 2-oxoacid dehydrogenase2 multienzyme complex from thermoplasma acidophilum
75c3nuiA_



not modelled 5.4 10
PDB header:transferase
Chain: A: PDB Molecule:pyruvate transaminase;
PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17
76c2h4tB_



not modelled 5.4 7
PDB header:transferase
Chain: B: PDB Molecule:carnitine o-palmitoyltransferase ii, mitochondrial;
PDBTitle: crystal structure of rat carnitine palmitoyltransferase ii
77c4fxeB_



not modelled 5.2 10
PDB header:toxin/toxin inhibitor
Chain: B: PDB Molecule:antitoxin relb;
PDBTitle: crystal structure of the intact e. coli relbe toxin-antitoxin complex
78c3kk4B_



not modelled 5.1 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein bp1543;
PDBTitle: uncharacterized protein bp1543 from bordetella pertussis tohama i

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Transmembrane helix prediction 

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