Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1210_(tagA)_1353528_1354142
DateWed Jul 31 22:05:30 BST 2019
Unique Job ID9f6e9f90bb79595b
SequenceVSGDGLVRCP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.091 Y:50.049 Z:37.368
Model (left) based on template d1nkua_
Top template information
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase I (Tag)
Confidence and coverage
Confidence:100.0% Coverage: 90%
183 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1nkua_
100.0 45
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase I (Tag)
2c2jg6A_
100.0 34
PDB header:hydrolase
Chain: A: PDB Molecule:dna-3-methyladenine glycosidase;
PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i from2 staphylococcus aureus
3d1keaa_
97.5 13
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
4d1orna_
97.0 14
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
5c4uobA_
96.7 11
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
6d1pu6a_
96.6 17
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase III (MagIII)
7d1rrqa1
96.1 16
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
8d1kg2a_
96.0 18
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
9c3fhgA_
95.9 18
PDB header:dna repair, hydrolase, lyase
Chain: A: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg)
10c3n5nX_
95.7 18
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
11c4unfA_
93.5 14
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
12d2abka_
93.0 15
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
13c3kntC_
92.1 16
PDB header:hydrolase, lyase/dna
Chain: C: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of methanocaldococcus jannaschii 8-oxoguanine2 glycosylase/lyase in complex with 15mer dna containing 8-oxoguanine
14c3n0uB_
91.8 18
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:probable n-glycosylase/dna lyase;
PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima
15d1ngna_
89.6 13
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
16c2yg8B_
76.3 17
PDB header:hydrolase
Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative;
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (alka) from2 deinococcus radiodurans
17d1mpga1
75.5 22
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
18c1rrqA_
73.6 11
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
19c2vtgA_
72.2 15
PDB header:metal-binding protein
Chain: A: PDB Molecule:ionized calcium-binding adapter molecule 2;
PDBTitle: crystal structure of human iba2, trigonal crystal form
20c1oxjA_
66.5 17
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein smaug;
PDBTitle: crystal structure of the smaug rna binding domain
21d1oxja1
not modelled 59.3 12
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
22c3hjzA_
not modelled 58.6 21
PDB header:transferase
Chain: A: PDB Molecule:transaldolase b;
PDBTitle: the structure of an aldolase from prochlorococcus marinus
23c3s6iA_
not modelled 57.3 12
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1;
PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
24d2cs4a1
not modelled 55.6 29
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
25c2g2bA_
not modelled 52.9 17
PDB header:immune system
Chain: A: PDB Molecule:allograft inflammatory factor 1;
PDBTitle: nmr structure of the human allograft inflammatory factor 1
26c2fe9A_
not modelled 52.4 18
PDB header:rna binding protein
Chain: A: PDB Molecule:protein vts1;
PDBTitle: solution structure of the vts1 sam domain in the presence2 of rna
27c2eseA_
not modelled 52.3 18
PDB header:protein/rna complex
Chain: A: PDB Molecule:vts1p;
PDBTitle: structure of the sam domain of vts1p in complex with rna
28c2b6gA_
not modelled 50.7 18
PDB header:rna binding protein
Chain: A: PDB Molecule:vts1p;
PDBTitle: rna recognition by the vts1 sam domain
29c2d58A_
not modelled 49.1 18
PDB header:metal binding protein
Chain: A: PDB Molecule:allograft inflammatory factor 1;
PDBTitle: human microglia-specific protein iba1
30d2noha1
not modelled 46.8 22
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
31c2hjwA_
not modelled 46.6 18
PDB header:ligase
Chain: A: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: crystal structure of the bc domain of acc2
32d1wg8a1
not modelled 45.2 22
Fold:SAM domain-like
Superfamily:Putative methyltransferase TM0872, insert domain
Family:Putative methyltransferase TM0872, insert domain
33c2e8nA_
not modelled 41.3 23
PDB header:transferase, signaling protein
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
34c3m16A_
not modelled 39.1 23
PDB header:transferase
Chain: A: PDB Molecule:transaldolase;
PDBTitle: structure of a transaldolase from oleispira antarctica
35c2remB_
not modelled 39.1 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:disulfide oxidoreductase;
PDBTitle: crystal structure of oxidoreductase dsba from xylella fastidiosa
36d1coka_
not modelled 38.6 19
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
37c3k1rB_
not modelled 38.3 25
PDB header:structural protein
Chain: B: PDB Molecule:usher syndrome type-1g protein;
PDBTitle: structure of harmonin npdz1 in complex with the sam-pbm of2 sans
38c3igxA_
not modelled 38.3 20
PDB header:transferase
Chain: A: PDB Molecule:transaldolase;
PDBTitle: 1.85 angstrom resolution crystal structure of transaldolase b (tala)2 from francisella tularensis.
39d1a9xa2
not modelled 34.9 14
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
40d1kjna_
not modelled 34.1 36
Fold:Hypothetical protein MTH777 (MT0777)
Superfamily:Hypothetical protein MTH777 (MT0777)
Family:Hypothetical protein MTH777 (MT0777)
41c3tkaA_
not modelled 33.6 17
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase h;
PDBTitle: crystal structure and solution saxs of methyltransferase rsmh from2 e.coli
42d1onra_
not modelled 33.6 20
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
43d1f05a_
not modelled 33.1 22
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
44c4b24A_
not modelled 31.7 19
PDB header:hydrolase/dna
Chain: A: PDB Molecule:probable dna-3-methyladenine glycosylase 2;
PDBTitle: unprecedented sculpting of dna at abasic sites by dna glycoslase2 homolog mag2
45c2uv1B_
not modelled 31.1 40
PDB header:inhibitor
Chain: B: PDB Molecule:host-nuclease inhibitor protein gam;
PDBTitle: hexagonal crystal form of gams from bacteriophage lambda.
46c3mwmA_
not modelled 30.0 33
PDB header:transcription
Chain: A: PDB Molecule:putative metal uptake regulation protein;
PDBTitle: graded expression of zinc-responsive genes through two regulatory2 zinc-binding sites in zur
47c3r8rJ_
not modelled 29.9 24
PDB header:transferase
Chain: J: PDB Molecule:transaldolase;
PDBTitle: transaldolase from bacillus subtilis
48c2yvqA_
not modelled 28.9 13
PDB header:ligase
Chain: A: PDB Molecule:carbamoyl-phosphate synthase;
PDBTitle: crystal structure of mgs domain of carbamoyl-phosphate2 synthetase from homo sapiens
49c5udtD_
not modelled 28.2 26
PDB header:transferase
Chain: D: PDB Molecule:lactate racemization operon protein lare;
PDBTitle: lare, a sulfur transferase involved in synthesis of the cofactor for2 lactate racemase, in complex with amp
50d1wlza1
not modelled 26.9 10
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
51c1vw4S_
not modelled 26.6 12
PDB header:ribosome
Chain: S: PDB Molecule:54s ribosomal protein l24, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
52c3cq0B_
not modelled 26.5 25
PDB header:transferase
Chain: B: PDB Molecule:putative transaldolase ygr043c;
PDBTitle: crystal structure of tal2_yeast
53c2m97A_
not modelled 26.5 13
PDB header:metal binding protein
Chain: A: PDB Molecule:optimized ratiometric calcium sensor;
PDBTitle: optimized ratiometric calcium sensors for functional in vivo imaging2 of neurons and t-lymphocytes
54d1vpxa_
not modelled 25.4 21
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
55c2nz7A_
not modelled 24.6 14
PDB header:apoptosis
Chain: A: PDB Molecule:caspase recruitment domain-containing protein 4;
PDBTitle: crystal structure analysis of caspase-recruitment domain2 (card) of nod1
56c2l98A_
not modelled 24.4 16
PDB header:contractile protein
Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles;
PDBTitle: structure of trans-resveratrol in complex with the cardiac regulatory2 protein troponin c
57c2dl0A_
not modelled 24.3 18
PDB header:signaling protein
Chain: A: PDB Molecule:sam and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sam-domain of the sam and sh32 domain containing protein 1
58c1wlzD_
not modelled 23.9 10
PDB header:unknown function
Chain: D: PDB Molecule:cap-binding protein complex interacting protein
PDBTitle: crystal structure of djbp fragment which was obtained by2 limited proteolysis
59d2e1da1
not modelled 23.2 22
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
60c6j7aB_
not modelled 22.5 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:heme oxygenase 1,nadph--cytochrome p450 reductase;
PDBTitle: fusion protein of heme oxygenase-1 and nadph cytochrome p450 reductase2 (17aa)
61c1scvA_
not modelled 22.5 16
PDB header:contractile protein, structural protein
Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles;
PDBTitle: nmr structure of the c terminal domain of cardiac troponin2 c bound to the n terminal domain of cardiac troponin i
62c2lc0A_
not modelled 21.8 9
PDB header:protein binding
Chain: A: PDB Molecule:putative uncharacterized protein tb39.8;
PDBTitle: rv0020c_nter structure
63d1v38a_
not modelled 21.3 14
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
64d1b0xa_
not modelled 21.0 18
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:SAM (sterile alpha motif) domain
65c1b0xA_
not modelled 21.0 18
PDB header:transferase
Chain: A: PDB Molecule:protein (epha4 receptor tyrosine kinase);
PDBTitle: the crystal structure of an eph receptor sam domain reveals2 a mechanism for modular dimerization.
66d1ulza2
not modelled 19.8 26
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
67c2k7bA_
not modelled 19.7 19
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
68c2ktgA_
not modelled 19.6 18
PDB header:ca-binding protein
Chain: A: PDB Molecule:calmodulin, putative;
PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
69c3s1vD_
not modelled 19.3 18
PDB header:transferase
Chain: D: PDB Molecule:probable transaldolase;
PDBTitle: transaldolase from thermoplasma acidophilum in complex with d-fructose2 6-phosphate schiff-base intermediate
70c2eaoA_
not modelled 18.9 25
PDB header:signaling protein, transferase
Chain: A: PDB Molecule:ephrin type-b receptor 1;
PDBTitle: solution structure of the c-terminal sam-domain of mouse2 ephrin type-b receptor 1 precursor (ec 2.7.1.112)
71d2j9ga2
not modelled 18.8 37
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
72c2jziB_
not modelled 18.8 36
PDB header:metal binding protein
Chain: B: PDB Molecule:serine/threonine-protein phosphatase 2b
PDBTitle: structure of calmodulin complexed with the calmodulin2 binding domain of calcineurin
73c2lweA_
not modelled 18.6 20
PDB header:signaling protein
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: solution structure of mutant (t170e) second card of human rig-i
74c1eg4A_
not modelled 18.5 17
PDB header:structural protein
Chain: A: PDB Molecule:dystrophin;
PDBTitle: structure of a dystrophin ww domain fragment in complex2 with a beta-dystroglycan peptide
75c2b1uA_
not modelled 18.4 30
PDB header:metal binding protein
Chain: A: PDB Molecule:calmodulin-like protein 5;
PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain
76c2ebuA_
not modelled 18.2 12
PDB header:replication
Chain: A: PDB Molecule:replication factor c subunit 1;
PDBTitle: solution structure of the brct domain from human2 replication factor c large subunit 1
77c4q5uC_
not modelled 18.0 38
PDB header:calcium binding protein/protein binding
Chain: C: PDB Molecule:serine/threonine-protein phosphatase 2b catalytic subunit
PDBTitle: structure of calmodulin bound to its recognition site from calcineurin
78c2obnA_
not modelled 18.0 23
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution
79c5zrxB_
not modelled 17.6 16
PDB header:protein binding
Chain: B: PDB Molecule:phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2,
PDBTitle: crystal structure of epha2/ship2 complex
80c4v191_
not modelled 17.6 6
PDB header:ribosome
Chain: 1: PDB Molecule:mitoribosomal protein bl28m, mrpl28;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
81c1cjyB_
not modelled 17.2 21
PDB header:hydrolase
Chain: B: PDB Molecule:protein (cytosolic phospholipase a2);
PDBTitle: human cytosolic phospholipase a2
82c2kdhA_
not modelled 17.1 16
PDB header:structural protein
Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles;
PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate
83d1wi3a_
not modelled 16.8 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Homeodomain
84c2o7pA_
not modelled 16.8 38
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
85c2jhnB_
not modelled 16.4 22
PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna-glycosylase;
PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus
86d1cjya2
not modelled 15.9 21
Fold:FabD/lysophospholipase-like
Superfamily:FabD/lysophospholipase-like
Family:Lysophospholipase
87c5eyvB_
not modelled 15.9 12
PDB header:lyase
Chain: B: PDB Molecule:adenylosuccinate lyase;
PDBTitle: crystal structure of adenylosuccinate lyase from schistosoma mansoni2 in apo form.
88d2opoa1
not modelled 15.8 15
Fold:EF Hand-like
Superfamily:EF-hand
Family:Polcalcin
89c5i2oA_
not modelled 15.7 9
PDB header:metal binding protein
Chain: A: PDB Molecule:ef-hand domain-containing protein d2;
PDBTitle: structure of ef-hand containing protein
90d1np8a_
not modelled 15.7 12
Fold:EF Hand-like
Superfamily:EF-hand
Family:Penta-EF-hand proteins
91c2wtgA_
not modelled 15.7 14
PDB header:oxygen transport
Chain: A: PDB Molecule:globin-like protein;
PDBTitle: high resolution 3d structure of c.elegans globin-like2 protein glb-1
92c4i2yB_
not modelled 15.5 22
PDB header:fluorescent protein
Chain: B: PDB Molecule:rgeco1;
PDBTitle: crystal structure of the genetically encoded calcium indicator rgeco1
93d1wx0a1
not modelled 15.5 24
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
94c5izrC_
not modelled 15.4 28
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:cytosolic phospholipase a2 delta;
PDBTitle: human givd cytosolic phospholipase a2 in complex with methyl gamma-2 linolenyl fluorophosphonate inhibitor and terbium chloride
95c2eeeA_
not modelled 15.3 23
PDB header:gene regulation
Chain: A: PDB Molecule:uncharacterized protein c6orf130;
PDBTitle: solution structure of the a1pp domain from human protein2 c6orf130
96d1l7ba_
not modelled 15.1 18
Fold:BRCT domain
Superfamily:BRCT domain
Family:DNA ligase
97d1hlqa_
not modelled 15.0 29
Fold:HIPIP (high potential iron protein)
Superfamily:HIPIP (high potential iron protein)
Family:HIPIP (high potential iron protein)
98c1ozsA_
not modelled 14.8 17
PDB header:structural protein
Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles;
PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i
99d1a77a1
not modelled 14.5 28
Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain

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