Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1211_(-)_1354249_1354476
DateWed Jul 31 22:05:30 BST 2019
Unique Job ID48c2bef2c97cf346
SequenceMLGADQARAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.068 Y:32.462 Z:47.782
Model (left) based on template d1xwna1
Top template information
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
Confidence and coverage
Confidence: 38.6% Coverage: 53%
40 residues ( 53% of your sequence) have been modelled with 38.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1xwna1



38.6 25
Fold:Cyclophilin-like
Superfamily:Cyclophilin-like
Family:Cyclophilin (peptidylprolyl isomerase)
2c2y9xG_



23.9 39
PDB header:oxidoreductase
Chain: G: PDB Molecule:lectin-like fold protein;
PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone
3d2w0pa1



19.3 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
4c2c4rL_



14.3 40
PDB header:hydrolase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: catalytic domain of e. coli rnase e
5d1dwka2



11.2 32
Fold:Cyanase C-terminal domain
Superfamily:Cyanase C-terminal domain
Family:Cyanase C-terminal domain
6c2iv1J_



9.8 32
PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the catalytic2 mechanism of cyanase
7c5y88S_



9.3 75
PDB header:splicing
Chain: S: PDB Molecule:pre-mrna-processing factor 17;
PDBTitle: cryo-em structure of the intron-lariat spliceosome ready for2 disassembly from s.cerevisiae at 3.5 angstrom
8c3obhA_



8.2 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104
9c2l3aA_



7.8 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of homodimer protein sp_0782 (7-79) from2 streptococcus pneumoniae northeast structural genomics consortium3 target spr104 .
10c2jorA_



6.5 67
PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha chain;
PDBTitle: nmr solution structure, stability, and interaction of the2 recombinant bovine fibrinogen alphac-domain fragment
11c5t5iL_



6.1 23
PDB header:oxidoreductase
Chain: L: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit fwdd;
PDBTitle: tungsten-containing formylmethanofuran dehydrogenase from2 methanothermobacter wolfeii, orthorhombic form at 1.9 a
12d1xdpa4



6.0 31
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
13c2kkeA_



5.7 48
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a dimeric protein of unknown2 function from methanobacterium thermoautotrophicum,3 northeast structural genomics consortium target tr5
14d1bvua2



5.6 38
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
15c4kqzA_



5.6 89
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: structure of the receptor binding domain (rbd) of mers-cov spike
16c2otbB_



5.5 37
PDB header:fluorescent protein
Chain: B: PDB Molecule:gfp-like fluorescent chromoprotein cfp484;
PDBTitle: crystal structure of a monomeric cyan fluorescent protein in the2 fluorescent state
17d1gtma2



5.5 40
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Aminoacid dehydrogenases
18d1kqfa1



5.4 46
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
19c2kkeB_



5.2 48
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a dimeric protein of unknown2 function from methanobacterium thermoautotrophicum,3 northeast structural genomics consortium target tr5
20c2qdrA_



5.1 29
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative dioxygenase (npun_f5605) from nostoc2 punctiforme pcc 73102 at 2.60 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite