Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1217c_(-)_1360161_1361807
DateWed Jul 31 22:05:30 BST 2019
Unique Job IDe538e326a7eb3495
SequenceVSSTVIDRAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.412 Y:43.550 Z:47.894
Model (left) based on template c6an7D_
Top template information
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
Confidence and coverage
Confidence: 99.2% Coverage: 40%
220 residues ( 40% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
497 residues ( 91%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6an7D_



99.2 10
PDB header:transport protein
Chain: D: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
2c6an7C_



99.1 9
PDB header:transport protein
Chain: C: PDB Molecule:transport permease protein;
PDBTitle: crystal structure of o-antigen polysaccharide abc-transporter
3c5do7A_



98.9 18
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family g member 5;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
4c5do7B_



98.9 16
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 8;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
5c5nj3B_



98.4 13
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 2;
PDBTitle: structure of an abc transporter: complete structure
6c5njgB_



98.4 17
PDB header:transport protein
Chain: B: PDB Molecule:atp-binding cassette sub-family g member 2;
PDBTitle: structure of an abc transporter: part of the structure that could be2 built de novo
7c5xjyA_



95.8 12
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family a member 1;
PDBTitle: cryo-em structure of human abca1
8c5ws4A_



45.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
9c6elhA_



25.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide reductase;
PDBTitle: low resolution structure of neisseria meningitidis qnor
10c6hwhX_



12.7 29
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
11d1otsa_



9.0 16
Fold:Clc chloride channel
Superfamily:Clc chloride channel
Family:Clc chloride channel
12d1jqna_



8.6 22
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate carboxylase
13c3hzqA_



7.8 14
PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: structure of a tetrameric mscl in an expanded intermediate state
14c2jp3A_



7.6 18
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
15c2jo1A_



7.5 36
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
16c5xu1M_



7.4 14
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
17c2mkvA_



7.3 18
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
18d1atxa_



7.2 36
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
19c5lj7B_



6.9 11
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
20c2h9xA_



6.9 24
PDB header:toxin
Chain: A: PDB Molecule:toxin cgna;
PDBTitle: nmr structure for the cgna toxin from the sea anemone2 condylactis gigantea
21c2bbjB_



not modelled 6.4 17
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
22c5lm4A_



not modelled 6.3 14
PDB header:transport protein
Chain: A: PDB Molecule:excitatory amino acid transporter 1,neutral amino acid
PDBTitle: structure of the thermostalilized eaat1 cryst-ii mutant in complex2 with l-asp and the allosteric inhibitor ucph101
23d1grja2



not modelled 6.3 27
Fold:FKBP-like
Superfamily:FKBP-like
Family:GreA transcript cleavage factor, C-terminal domain
24c1grjA_



not modelled 6.1 27
PDB header:transcription regulation
Chain: A: PDB Molecule:grea protein;
PDBTitle: grea transcript cleavage factor from escherichia coli
25d2ezla_



not modelled 6.1 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
26c2h7dB_



not modelled 6.0 45
PDB header:structural protein
Chain: B: PDB Molecule:chimera of 24-mer peptide from integrin beta-3
PDBTitle: solution structure of the talin f3 domain in complex with a2 chimeric beta3 integrin-pip kinase peptide
27d2adra2



not modelled 5.9 67
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
28c2jpwA_



not modelled 5.8 25
PDB header:contractile protein
Chain: A: PDB Molecule:troponin i, cardiac muscle;
PDBTitle: solution structure of the bisphosphorylated cardiac2 specific n-extension of cardiac troponin i
29c4ev6E_



not modelled 5.6 14
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
30d2oz4a1



not modelled 5.6 30
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
31c5nikK_



not modelled 5.3 12
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
32c5ld1D_



not modelled 5.1 17
PDB header:transferase
Chain: D: PDB Molecule:polyphosphate:amp phosphotransferase;
PDBTitle: crystal structure of polyphosphate kinase from meiothermus ruber bound2 to atp

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below