Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1224_(tatB)_1367469_1367864
DateWed Jul 31 22:05:31 BST 2019
Unique Job IDe936dbf7bfbbf3b9
SequenceVFANIGWWEM ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:28.443 Y:73.552 Z:76.086
Model (left) based on template c2mi2A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
Confidence and coverage
Confidence: 99.9% Coverage: 79%
103 residues ( 79% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2mi2A_
99.9 23
PDB header:transport protein
Chain: A: PDB Molecule:sec-independent protein translocase protein tatb;
PDBTitle: solution structure of the e. coli tatb protein in dpc micelles
2c2l16A_
99.8 25
PDB header:protein transport
Chain: A: PDB Molecule:sec-independent protein translocase protein tatad;
PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles
3c2lzsE_
99.7 13
PDB header:protein transport
Chain: E: PDB Molecule:sec-independent protein translocase protein tata;
PDBTitle: tata oligomer
4c6o7ua_
50.2 18
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
5c5i1mV_
47.5 17
PDB header:membrane protein
Chain: V: PDB Molecule:v-type proton atpase subunit a, vacuolar isoform;
PDBTitle: yeast v-atpase average of densities, a subunit segment
6d1ohua_
39.8 18
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
7c6o7xa_
35.0 32
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
8c3a0hJ_
28.9 54
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
9d2axtj1
24.9 54
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
10c3a0hi_
23.2 38
PDB header:electron transport
Chain: I: PDB Molecule:photosystem ii reaction center protein i;
PDBTitle: crystal structure of i-substituted photosystem ii complex
11d2axti1
23.2 38
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
12c5xnmj_
23.1 31
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
13c3msqC_
22.1 11
PDB header:biosynthetic protein
Chain: C: PDB Molecule:putative ubiquinone biosynthesis protein;
PDBTitle: crystal structure of a putative ubiquinone biosynthesis protein2 (npun02000094) from nostoc punctiforme pcc 73102 at 2.85 a resolution
14c3jcuI_
21.4 31
PDB header:membrane protein
Chain: I: PDB Molecule:protein photosystem ii reaction center protein i;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
15c3jcuj_
20.9 38
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
16c4d18G_
20.1 13
PDB header:signaling protein
Chain: G: PDB Molecule:cop9 signalosome complex subunit 7a;
PDBTitle: crystal structure of the cop9 signalosome
17c2voyH_
15.0 28
PDB header:hydrolase
Chain: H: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
18c4pv1H_
13.6 46
PDB header:electron transport/inhibitor
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: cytochrome b6f structure from m. laminosus with the quinone analog2 inhibitor stigmatellin
19c4i7zH_
13.6 46
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of cytochrome b6f in dopg, with disordered rieske2 iron-sulfur protein soluble domain
20c3kb4D_
13.4 7
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:alr8543 protein;
PDBTitle: crystal structure of the alr8543 protein in complex with2 geranylgeranyl monophosphate and magnesium ion from nostoc sp. pcc3 7120, northeast structural genomics consortium target nsr141
21c2e76H_
not modelled 13.3 46
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
22c2e75H_
not modelled 13.3 46
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus
23c2e74H_
not modelled 13.3 46
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus
24c4h13H_
not modelled 13.3 46
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: crystal structure of the cytochrome b6f complex from mastigocladus2 laminosus with tds
25c4h0lH_
not modelled 13.3 46
PDB header:photosynthesis
Chain: H: PDB Molecule:cytochrome b6-f complex subunit 8;
PDBTitle: cytochrome b6f complex crystal structure from mastigocladus laminosus2 with n-side inhibitor nqno
26c5uulB_
not modelled 12.5 19
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-binding component 3;
PDBTitle: human bfl-1 in complex with puma bh3
27c4pj0L_
not modelled 11.1 14
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
28c4pj0l_
not modelled 11.1 14
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
29c4rvyL_
not modelled 10.7 14
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
30c4tniL_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
31c4rvyl_
not modelled 10.7 14
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
32c3a0bl_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
33c3a0hl_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
34c4tnkl_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
35c5e7cL_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
36c3prrL_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
37c4tnhL_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
38c4fbyL_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: fs x-ray diffraction of photosystem ii
39c2axtl_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
40c5e7cl_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
41c3a0bL_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
42c4tnjL_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
43c4tnhl_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
44c4fbyd_
not modelled 10.7 14
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii d2 protein;
PDBTitle: fs x-ray diffraction of photosystem ii
45c3arcL_
not modelled 10.7 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
46c2axtL_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
47c4tnil_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
48d2axtl1
not modelled 10.7 14
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
49c3prqL_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
50c4tnkL_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
51c3a0hL_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
52c4tnjl_
not modelled 10.7 14
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
53c4ixrL_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
54c3wu2L_
not modelled 10.7 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
55c4ixqL_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
56c4il6l_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
57c4il6L_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
58c3wu2l_
not modelled 10.7 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
59c3bz2L_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
60c4ixrl_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
61c4ixql_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
62c3kziL_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
63c3bz1L_
not modelled 10.7 14
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
64c1s5ll_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
65c4ub6l_
not modelled 10.7 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
66c4ub8L_
not modelled 10.7 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
67c1s5lL_
not modelled 10.7 14
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
68c4ub8l_
not modelled 10.7 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
69c4ub6L_
not modelled 10.7 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
70c2bzwB_
not modelled 9.5 16
PDB header:transcription
Chain: B: PDB Molecule:bcl2-antagonist of cell death;
PDBTitle: the crystal structure of bcl-xl in complex with full-length bad
71c3arcl_
not modelled 9.2 14
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
72c1kv4A_
not modelled 8.6 17
PDB header:antibiotic
Chain: A: PDB Molecule:moricin;
PDBTitle: solution structure of antibacterial peptide (moricin)
73c2o60B_
not modelled 8.4 26
PDB header:metal binding protein
Chain: B: PDB Molecule:peptide corresponding to calmodulin binding domain of
PDBTitle: calmodulin bound to peptide from neuronal nitric oxide synthase
74c4nf9A_
not modelled 7.8 11
PDB header:cell cycle
Chain: A: PDB Molecule:protein casc5;
PDBTitle: structure of the knl1/nsl1 complex
75c2jpxA_
not modelled 7.7 50
PDB header:viral protein
Chain: A: PDB Molecule:vpu protein;
PDBTitle: a18h vpu tm structure in lipid bilayers
76c6dkmB_
not modelled 7.5 12
PDB header:de novo protein
Chain: B: PDB Molecule:dhd131_b;
PDBTitle: dhd131
77c2jr8A_
not modelled 7.5 17
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide moricin;
PDBTitle: solution structure of manduca sexta moricin
78c2zjsE_
not modelled 7.5 13
PDB header:protein transport/immune system
Chain: E: PDB Molecule:preprotein translocase sece subunit;
PDBTitle: crystal structure of secye translocon from thermus thermophilus with a2 fab fragment
79c5ireD_
not modelled 7.4 25
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: the cryo-em structure of zika virus
80c2rocB_
not modelled 7.3 17
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-binding component 3;
PDBTitle: solution structure of mcl-1 complexed with puma
81c3ci9B_
not modelled 6.7 12
PDB header:transcription
Chain: B: PDB Molecule:heat shock factor-binding protein 1;
PDBTitle: crystal structure of the human hsbp1
82c5t42A_
not modelled 6.7 18
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the ebola virus envelope protein mper/tm domain and its2 interaction with the fusion loop explains their fusion activity
83c6btmA_
not modelled 6.7 31
PDB header:membrane protein
Chain: A: PDB Molecule:alternative complex iii subunit a;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
84c5xauC_
not modelled 6.6 9
PDB header:cell adhesion
Chain: C: PDB Molecule:laminin subunit gamma-1;
PDBTitle: crystal structure of integrin binding fragment of laminin-511
85c5wdaL_
not modelled 6.6 36
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
86d2cqqa1
not modelled 6.5 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Myb/SANT domain
87c5j10A_
not modelled 6.4 11
PDB header:de novo protein
Chain: A: PDB Molecule:peptide design 2l4hc2_24;
PDBTitle: de novo design of protein homo-oligomers with modular hydrogen bond2 network-mediated specificity
88c5wsnD_
not modelled 6.3 25
PDB header:virus
Chain: D: PDB Molecule:m protein;
PDBTitle: structure of japanese encephalitis virus
89c1p58E_
not modelled 5.9 33
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
90c1p58F_
not modelled 5.9 33
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
91c6cfzC_
not modelled 5.8 26
PDB header:nuclear protein
Chain: C: PDB Molecule:dad2;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
92c3mwgA_
not modelled 5.8 9
PDB header:transport protein
Chain: A: PDB Molecule:iron-regulated abc transporter siderophore-binding protein
PDBTitle: crystal structure of staphylococcus aureus sira
93c4hnjC_
not modelled 5.7 22
PDB header:apoptosis/protein binding
Chain: C: PDB Molecule:bcl-2-binding component 3;
PDBTitle: crystallographic structure of bcl-xl domain-swapped dimer in complex2 with puma bh3 peptide at 2.9a resolution
94c3t0yA_
not modelled 5.7 8
PDB header:transcription regulator/protein binding
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr anti-anti-sigma domain bound to the anti-sigma2 factor, nepr
95c6fkip_
not modelled 5.7 4
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
96c6fo1G_
not modelled 5.4 21
PDB header:chaperone
Chain: G: PDB Molecule:rna polymerase ii-associated protein 3;
PDBTitle: human r2tp subcomplex containing 1 ruvbl1-ruvbl2 hexamer bound to 12 rbd domain from rpap3.
97c3jcul_
not modelled 5.4 14
PDB header:membrane protein
Chain: L: PDB Molecule:protein photosystem ii reaction center protein l;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
98c3nzlA_
not modelled 5.2 0
PDB header:transcription
Chain: A: PDB Molecule:dna-binding protein satb1;
PDBTitle: crystal structure of the n-terminal domain of dna-binding protein2 satb1 from homo sapiens, northeast structural genomics consortium3 target hr4435b
99c3zbhC_
not modelled 5.2 16
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below