Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1227c_(-)_1370298_1370831
DateWed Jul 31 22:05:31 BST 2019
Unique Job ID8b2b13f83f69bb4e
SequenceLDHARNVPSA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.545 Y:32.589 Z:35.920
Model (left) based on template d2gcla1
Top template information
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:SSRP1-like
Confidence and coverage
Confidence: 74.2% Coverage: 32%
57 residues ( 32% of your sequence) have been modelled with 74.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2gcla1



74.2 19
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:SSRP1-like
2c3fssA_



51.4 8
PDB header:chaperone
Chain: A: PDB Molecule:histone chaperone rtt106;
PDBTitle: structure of the tandem ph domains of rtt106
3c6c4vA_



49.9 18
PDB header:transport protein
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: 1.9 angstrom resolution crystal structure of acyl carrier protein2 domain (residues 1350-1461) of polyketide synthase pks13 from3 mycobacterium tuberculosis
4c4tyzB_



49.4 11
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the c-terminal domain of an unknown protein from2 leishmania infantum
5d2hthb1



48.8 7
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:VPS36 N-terminal domain-like
6d1zj8a1



39.9 16
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
7c3gypA_



29.5 8
PDB header:chaperone
Chain: A: PDB Molecule:histone chaperone rtt106;
PDBTitle: rtt106p
8d1j8ba_



29.4 18
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
9d3c7bb2



28.2 11
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
10d2v4jb2



22.8 14
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
11d2ebfx3



21.9 14
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:PMT C-terminal domain like
12d2caya1



20.3 11
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:VPS36 N-terminal domain-like
13c1ybxA_



19.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: conserved hypothetical protein cth-383 from clostridium thermocellum
14c5nocA_



17.3 23
PDB header:dna binding protein
Chain: A: PDB Molecule:stage 0 sporulation protein j;
PDBTitle: solution nmr structure of the c-terminal domain of parb (spo0j)
15d3dcxa1



16.1 5
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:BPHL domain
16d1aopa2



15.0 6
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
17c4n7rD_



12.0 13
PDB header:oxidoreductase/protein binding
Chain: D: PDB Molecule:genomic dna, chromosome 3, p1 clone: mxl8;
PDBTitle: crystal structure of arabidopsis glutamyl-trna reductase in complex2 with its binding protein
18c2fwvA_



12.0 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein mtubf_01000852;
PDBTitle: crystal structure of rv0813
19d1zj8a2



11.1 11
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
20c5x3xq_



10.6 13
PDB header:transport protein
Chain: Q: PDB Molecule:uncharacterized protein cbiq;
PDBTitle: 2.8a resolution structure of a cobalt energy-coupling factor2 transporter-cbimqo
21c5bncB_



not modelled 10.2 15
PDB header:heme binding protein
Chain: B: PDB Molecule:heme binding protein msmeg_6519;
PDBTitle: structure of heme binding protein msmeg_6519 from mycobacterium2 smegmatis
22d1puga_



not modelled 10.1 20
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
23c2d7dB_



not modelled 10.1 32
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
24c2v4jE_



not modelled 10.0 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
25c3c7bE_



not modelled 9.3 11
PDB header:oxidoreductase
Chain: E: PDB Molecule:sulfite reductase, dissimilatory-type subunit beta;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
26d2akja1



not modelled 8.6 11
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:Duplicated SiR/NiR-like domains 1 and 3
27c2v4jA_



not modelled 8.5 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit
PDBTitle: the crystal structure of desulfovibrio vulgaris2 dissimilatory sulfite reductase bound to dsrc provides3 novel insights into the mechanism of sulfate respiration
28c3c7bA_



not modelled 7.8 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:sulfite reductase, dissimilatory-type subunit alpha;
PDBTitle: structure of the dissimilatory sulfite reductase from archaeoglobus2 fulgidus
29d1iioa_



not modelled 7.3 22
Fold:EF Hand-like
Superfamily:Hypothetical protein MTH865
Family:Hypothetical protein MTH865
30c2kw0A_



not modelled 6.6 7
PDB header:oxidoreductase
Chain: A: PDB Molecule:ccmh protein;
PDBTitle: solution structure of n-terminal domain of ccmh from escherichia.coli
31c6eznH_



not modelled 6.6 17
PDB header:membrane protein
Chain: H: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
32c2kl8A_



not modelled 6.3 16
PDB header:de novo protein
Chain: A: PDB Molecule:or15;
PDBTitle: solution nmr structure of de novo designed ferredoxin-like fold2 protein, northeast structural genomics consortium target or15
33d2dx5a1



not modelled 6.2 13
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:VPS36 N-terminal domain-like
34c4e1pA_



not modelled 6.1 20
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 1 21 1 space group
35c4e1rA_



not modelled 6.1 20
PDB header:dna binding protein
Chain: A: PDB Molecule:protein lsr2;
PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 31 2 1 space group
36c2n2aA_



not modelled 6.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
37c4ev6E_



not modelled 5.7 13
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
38c2hl7A_



not modelled 5.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccmh;
PDBTitle: crystal structure of the periplasmic domain of ccmh from pseudomonas2 aeruginosa
39c5h92A_



not modelled 5.5 14
PDB header:oxidoreductase/electron transport
Chain: A: PDB Molecule:sulfite reductase [ferredoxin], chloroplastic;
PDBTitle: crystal structure of the complex between maize sulfite reductase and2 ferredoxin in the form-3 crystal

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below