Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1228_(lpqX)_1370926_1371483
DateWed Jul 31 22:05:31 BST 2019
Unique Job IDb18742260bd5a44d
SequenceMSRQWHWLAA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.733 Y:7.971 Z:12.653
Model (left) based on template c1d0rA_
Top template information
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide;
PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide in2 trifluoroethanol/water
Confidence and coverage
Confidence: 20.1% Coverage: 5%
9 residues ( 5% of your sequence) have been modelled with 20.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1d0rA_
20.1 78
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide;
PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide in2 trifluoroethanol/water
2d2a1ba1
17.1 30
Fold:Ferredoxin-like
Superfamily:CcmK-like
Family:CcmK-like
3d1p65a_
16.8 53
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Arterivirus nucleocapsid protein
4c1p65A_
16.8 53
PDB header:viral protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: crystal structure of the nucleocapsid protein of porcine reproductive2 and respiratory syndrome virus (prrsv)
5c6qe7A_
15.8 19
PDB header:sugar binding protein
Chain: A: PDB Molecule:anti-sigma factor domain-containing protein;
PDBTitle: anti-sigma factor domain-containing protein
6c2l64A_
15.4 44
PDB header:hormone
Chain: A: PDB Molecule:glucagon-like peptide 2;
PDBTitle: nmr solution structure of glp-2 in dhpc micelles
7c1jrjA_
14.7 67
PDB header:hormone/growth factor
Chain: A: PDB Molecule:exendin-4;
PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
8c4qivA_
14.5 39
PDB header:structural protein
Chain: A: PDB Molecule:bacterial microcompartments family protein;
PDBTitle: crystal structure of hexameric microcomparment shell protein from2 aeromonas hydrophila
9c3ngkA_
13.8 30
PDB header:unknown function
Chain: A: PDB Molecule:propanediol utilization protein pdua;
PDBTitle: pdua from salmonella enterica typhimurium
10c5waiC_
13.8 26
PDB header:transcription
Chain: C: PDB Molecule:zinc finger protein aebp2;
PDBTitle: crystal structure of a suz12-rbbp4-jarid2-aebp2 heterotetrameric2 complex
11d1e8ob_
13.3 50
Fold:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Superfamily:Signal recognition particle alu RNA binding heterodimer, SRP9/14
Family:Signal recognition particle alu RNA binding heterodimer, SRP9/14
12c6qk7C_
12.7 50
PDB header:translation
Chain: C: PDB Molecule:elongator complex protein 3;
PDBTitle: elongator catalytic subcomplex elp123 lobe
13c4gr5B_
12.3 30
PDB header:ligase
Chain: B: PDB Molecule:non-ribosomal peptide synthetase;
PDBTitle: crystal structure of slgn1deltaasub in complex with ampcpp
14d1kzyc2
12.3 25
Fold:BRCT domain
Superfamily:BRCT domain
Family:53BP1
15c5djbD_
11.6 35
PDB header:structural protein
Chain: D: PDB Molecule:microcompartments protein;
PDBTitle: structure of the haliangium ochraceum bmc-h shell protein
16c6n2cA_
11.3 39
PDB header:cell adhesion
Chain: A: PDB Molecule:tapirin;
PDBTitle: the crystal structure of caldicellulosiruptor hydrothermalis tapirin2 c-terminal domain
17d3deoa1
11.1 38
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:Chromo domain
18c6cfzA_
11.0 36
PDB header:nuclear protein
Chain: A: PDB Molecule:ask1;
PDBTitle: structure of the dash/dam1 complex shows its role at the yeast2 kinetochore-microtubule interface
19c2qx0A_
10.8 28
PDB header:transferase
Chain: A: PDB Molecule:7,8-dihydro-6-hydroxymethylpterin-
PDBTitle: crystal structure of yersinia pestis hppk (ternary complex)
20c5o9zN_
10.6 24
PDB header:splicing
Chain: N: PDB Molecule:zinc finger matrin-type protein 2;
PDBTitle: cryo-em structure of a pre-catalytic human spliceosome primed for2 activation (b complex)
21c3j38h_
not modelled 10.2 47
PDB header:ribosome
Chain: H: PDB Molecule:40s ribosomal protein s7;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
22c3t5cA_
not modelled 9.4 40
PDB header:ligase
Chain: A: PDB Molecule:probable chain-fatty-acid-coa ligase fadd13;
PDBTitle: crystal structure of n-terminal domain of facl13 from mycobacterium2 tuberculosis in different space group c2
23c3i6pF_
not modelled 9.3 22
PDB header:structural protein
Chain: F: PDB Molecule:ethanolamine utilization protein eutm;
PDBTitle: ethanolamine utilization microcompartment shell subunit, eutm
24d1t6aa_
not modelled 9.0 44
Fold:TBP-like
Superfamily:Rbstp2229 protein
Family:Rbstp2229 protein
25c5hpnA_
not modelled 8.8 30
PDB header:de novo protein
Chain: A: PDB Molecule:permuted pdua;
PDBTitle: a circularly permuted pdua forming an icosahedral cage
26c1t5qA_
not modelled 8.8 88
PDB header:hormone/growth factor
Chain: A: PDB Molecule:gastric inhibitory polypeptide;
PDBTitle: solution structure of gip(1-30)amide in tfe/water
27c6n3cM_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: M: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
28c6n3cQ_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: Q: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
29c6n3cO_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: O: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
30c6n3cG_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: G: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
31c6n3cA_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: A: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
32c6n3cS_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: S: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
33c6n3cK_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: K: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
34c6n3cC_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: C: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
35c6n3cE_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: E: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
36c6n3cI_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: I: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
37c6n3cH_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: H: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
38c6n3cP_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: P: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
39c6n3cB_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: B: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
40c6n3cR_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: R: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
41c6n3cN_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: N: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
42c6n3cJ_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: J: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
43c6n3cL_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: L: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
44c6n3cD_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: D: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
45c6n3cT_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: T: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
46c6n3cF_
not modelled 8.7 38
PDB header:dna binding protein, protein fibril
Chain: F: PDB Molecule:tar dna-binding protein 43;
PDBTitle: segb, conformation of tdp-43 low complexity domain segment a
47c3rrrM_
not modelled 8.4 53
PDB header:viral protein
Chain: M: PDB Molecule:fusion glycoprotein f0;
PDBTitle: structure of the rsv f protein in the post-fusion conformation
48c3qs3I_
not modelled 8.3 31
PDB header:cell adhesion
Chain: I: PDB Molecule:fimbrillin matb homolog, ecpd;
PDBTitle: crystal structure of the biofilm forming subunit of the e. coli common2 pilus: donor strand complemented (dsc) ecpa
49c2nawA_
not modelled 8.2 54
PDB header:toxin
Chain: A: PDB Molecule:exendin-4, alpha/kappa-conotoxin pl14a chimera;
PDBTitle: nmr solution structure of exendin-4/conotoxin chimera (ex-4[1-2 27]/pl14a)
50c3l52A_
not modelled 8.2 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:orotidine 5'-phosphate decarboxylase;
PDBTitle: crystal structure of putative orotidine 5'-phosphate decarboxylase2 from streptomyces avermitilis ma-4680
51c6nerS_
not modelled 8.0 36
PDB header:structural protein
Chain: S: PDB Molecule:bmc-h tandem fusion protein;
PDBTitle: synthetic haliangium ochraceum bmc shell
52c2ekjA_
not modelled 7.9 26
PDB header:signaling protein
Chain: A: PDB Molecule:collagen alpha-1(xx) chain;
PDBTitle: solution structures of the fn3 domain of human collagen2 alpha-1(xx) chain
53d1xcra1
not modelled 7.7 33
Fold:AF0104/ALDC/Ptd012-like
Superfamily:AF0104/ALDC/Ptd012-like
Family:PTD012-like
54c5vcsB_
not modelled 7.7 38
PDB header:transferase
Chain: B: PDB Molecule:alpha-1,6-mannosyl-glycoprotein 2-beta-n-
PDBTitle: alpha-1,6-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase2 with bound acceptor
55d1cbka_
not modelled 7.6 24
Fold:Ferredoxin-like
Superfamily:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Family:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
56c6fosD_
not modelled 7.4 33
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem i p700 chlorophyll a apoprotein a2;
PDBTitle: cyanidioschyzon merolae photosystem i
57c3rxyA_
not modelled 7.3 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:nif3 protein;
PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus
58c5vcmA_
not modelled 7.1 33
PDB header:transferase
Chain: A: PDB Molecule:alpha-1,6-mannosyl-glycoprotein 2-beta-n-
PDBTitle: alpha-1,6-mannosyl-glycoprotein 2-beta-n-acetylglucosaminyltransferase2 with bound udp and manganese
59d1h7za_
not modelled 7.0 40
Fold:Virus attachment protein globular domain
Superfamily:Virus attachment protein globular domain
Family:Adenovirus fiber protein "knob" domain
60c2obuA_
not modelled 7.0 88
PDB header:hormone/growth factor
Chain: A: PDB Molecule:gastric inhibitory polypeptide;
PDBTitle: solution structure of gip in tfe/water
61c5dihE_
not modelled 7.0 27
PDB header:structural protein
Chain: E: PDB Molecule:microcompartments protein;
PDBTitle: structure of haliangium ochraceum bmc-t ho-5812
62d2cuia1
not modelled 7.0 30
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
63c2cg8B_
not modelled 6.8 21
PDB header:lyase/transferase
Chain: B: PDB Molecule:dihydroneopterin aldolase 6-hydroxymethyl-7,8-
PDBTitle: the bifunctional dihydroneopterin aldolase 6-hydroxymethyl-2 7,8-dihydropterin synthase from streptococcus pneumoniae
64c2navA_
not modelled 6.8 86
PDB header:toxin
Chain: A: PDB Molecule:exendin-4, alpha/kappa-conotoxin pl14a chimera;
PDBTitle: nmr solution structure of ex-4[1-16]/pl14a
65d2a10a1
not modelled 6.7 17
Fold:Ferredoxin-like
Superfamily:CcmK-like
Family:CcmK-like
66c2dleA_
not modelled 6.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase eta;
PDBTitle: solution structure of the fourth fn3 domain of human2 receptor-type tyrosine-protein phosphatase eta
67d1wxqa2
not modelled 6.4 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:G domain-linked domain
68d2ewha1
not modelled 6.4 22
Fold:Ferredoxin-like
Superfamily:CcmK-like
Family:CcmK-like
69c1bh0A_
not modelled 6.3 71
PDB header:synthetic hormone
Chain: A: PDB Molecule:glucagon;
PDBTitle: structure of a glucagon analog
70c3b83B_
not modelled 6.3 26
PDB header:unknown function
Chain: B: PDB Molecule:ten-d3;
PDBTitle: computer-based redesign of a beta sandwich protein suggests that2 extensive negative design is not required for de novo beta sheet3 design.
71d2pu9b1
not modelled 6.2 29
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Ferredoxin thioredoxin reductase (FTR), alpha (variable) chain
72c5l38A_
not modelled 6.2 30
PDB header:structural protein
Chain: A: PDB Molecule:msm0272 - rmm microcompartment shell protein;
PDBTitle: the structure of the hexagonal shell protein msm0272 from the rmm2 microcompartment
73d1f9ya_
not modelled 6.1 28
Fold:Ferredoxin-like
Superfamily:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Family:6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
74d1fnha3
not modelled 6.1 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
75c5vitC_
not modelled 5.9 26
PDB header:transferase
Chain: C: PDB Molecule:mdcc;
PDBTitle: crystal structure of a pseudomonas malonate decarboxylase hetero-2 tetramer in complex with malonate
76c4qo6A_
not modelled 5.9 31
PDB header:structural protein
Chain: A: PDB Molecule:adenylate cyclase-like protein;
PDBTitle: structural studies of cdsd, a structural protein of the type iii2 secretion system (ttss) of chlamydia trachomatis
77d1inla_
not modelled 5.8 35
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Spermidine synthase
78d1fnfa3
not modelled 5.8 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
79d1qr4a2
not modelled 5.7 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
80d2b3ta1
not modelled 5.7 56
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:N5-glutamine methyltransferase, HemK
81d1x5ja1
not modelled 5.6 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
82c3hlzA_
not modelled 5.2 55
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bt_1490;
PDBTitle: crystal structure of bt_1490 (np_810393.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.50 a resolution

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