Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1230c_(-)_1372968_1374203
DateWed Jul 31 22:05:32 BST 2019
Unique Job IDb6817d2d29e4fb28
SequenceVHIGGRWGAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.888 Y:52.819 Z:52.651
Model (left) based on template c5anzA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
Confidence and coverage
Confidence:100.0% Coverage: 55%
228 residues ( 55% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 69% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5anzA_
100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:soluble lytic transglycosylase b3;
PDBTitle: crystal structure of sltb3 from pseudomonas aeruginosa.
2d1qusa_
100.0 28
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
3c4anrA_
100.0 19
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic transglycosylase b;
PDBTitle: crystal structure of soluble lytic transglycosylase sltb12 from pseudomonas aeruginosa
4d1qsaa2
99.1 25
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Bacterial muramidase, catalytic domain
5c3gxkB_
99.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:goose-type lysozyme 1;
PDBTitle: the crystal structure of g-type lysozyme from atlantic cod (gadus2 morhua l.) in complex with nag oligomers sheds new light on substrate3 binding and the catalytic mechanism. native structure to 1.9
6c3w6dB_
99.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme-like chitinolytic enzyme;
PDBTitle: crystal structure of catalytic domain of chitinase from ralstonia sp.2 a-471 (e141q) in complex with tetrasaccharide
7c4oz9A_
98.9 23
PDB header:lyase
Chain: A: PDB Molecule:membrane-bound lytic murein transglycosylase f;
PDBTitle: crystal structure of mltf from pseudomonas aeruginosa complexed with2 isoleucine
8d1gbsa_
98.9 20
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:G-type lysozyme
9c4cfoB_
98.8 25
PDB header:hydrolase
Chain: B: PDB Molecule:mltc;
PDBTitle: structure of lytic transglycosylase mltc from escherichia2 coli in complex with tetrasaccharide at 2.9 a resolution.
10c2y8pA_
98.7 26
PDB header:lyase
Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a;
PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli
11c3mgwA_
98.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme g;
PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme
12c1slyA_
97.7 27
PDB header:glycosyltransferase
Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase;
PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a
13c6fcqA_
97.5 29
PDB header:lyase
Chain: A: PDB Molecule:soluble lytic murein transglycosylase;
PDBTitle: the x-ray structure of lytic transglycosylase slt inactive mutant2 e503q from pseudomonas aeruginosa in complex with bulgecin a
14c6cfcA_
95.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of soluble lytic transglycosylase cj0843 of2 campylobacter jejuni in complex with bulgecin a
15c4xp8A_
94.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:etga protein;
PDBTitle: structure of etga d60n mutant
16c4fdyA_
82.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:similar to lipoprotein, nlp/p60 family;
PDBTitle: crystal structure of a similar to lipoprotein, nlp/p60 family2 (sav0400) from staphylococcus aureus subsp. aureus mu50 at 2.23 a3 resolution
17c4hpeA_
73.2 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative cell wall hydrolase tn916-like,ctn1-orf17;
PDBTitle: crystal structure of a putative cell wall hydrolase (cd630_03720) from2 clostridium difficile 630 at 2.38 a resolution
18c3bkhA_
63.2 30
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
19c1xsfA_
58.9 35
PDB header:cell cycle, hydrolase
Chain: A: PDB Molecule:probable resuscitation-promoting factor rpfb;
PDBTitle: solution structure of a resuscitation promoting factor2 domain from mycobacterium tuberculosis
20d1xsfa1
57.6 35
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:RPF-like
21c5e27B_
not modelled 57.0 35
PDB header:cell adhesion
Chain: B: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: the structure of resuscitation promoting factor b from m. tuberculosis2 reveals unexpected ubiquitin-like domains
22c4ow1A_
not modelled 54.6 35
PDB header:hydrolase
Chain: A: PDB Molecule:resuscitation-promoting factor rpfc;
PDBTitle: crystal structure of resuscitation promoting factor c
23c3eo5A_
not modelled 34.7 35
PDB header:cell adhesion
Chain: A: PDB Molecule:resuscitation-promoting factor rpfb;
PDBTitle: crystal structure of the resuscitation promoting factor rpfb
24c4uyqB_
not modelled 19.5 24
PDB header:cell adhesion/protein binding
Chain: B: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: high resolution structure of the third cohesin scac in complex with2 the scab dockerin with a mutation in the c-terminal helix (in to si)3 from acetivibrio cellulolyticus displaying a type i interaction.
25c5yanB_
not modelled 19.2 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer
26c3p0dD_
not modelled 17.6 25
PDB header:hydrolase
Chain: D: PDB Molecule:glycoside hydrolase family 9;
PDBTitle: crystal structure of a multimodular ternary protein complex from2 clostridium thermocellum
27d1twla_
not modelled 16.2 36
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
28c5wrtB_
not modelled 11.9 50
PDB header:hydrolase
Chain: B: PDB Molecule:soluble inorganic pyrophosphatase;
PDBTitle: crystal structure of type i inorganic pyrophosphatase from toxoplasma2 gondii.
29c4nl6C_
not modelled 11.2 20
PDB header:splicing
Chain: C: PDB Molecule:survival motor neuron protein;
PDBTitle: structure of the full-length form of the protein smn found in healthy2 patients
30d1dvoa_
not modelled 10.5 17
Fold:FinO-like
Superfamily:FinO-like
Family:FinO-like
31c4qdnA_
not modelled 10.2 11
PDB header:hydrolase
Chain: A: PDB Molecule:flagellar protein flgj [peptidoglycan hydrolase];
PDBTitle: crystal structure of the endo-beta-n-acetylglucosaminidase from2 thermotoga maritima
32c3d63B_
not modelled 9.8 55
PDB header:hydrolase
Chain: B: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from burkholderia2 pseudomallei
33c3ld3A_
not modelled 9.1 73
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic phosphatase from anaplasma2 phagocytophilum at 1.75a resolution
34c1ygzC_
not modelled 8.9 45
PDB header:hydrolase
Chain: C: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from helicobacter2 pylori
35c5nb9A_
not modelled 8.6 28
PDB header:rna
Chain: A: PDB Molecule:rna chaperone proq;
PDBTitle: structure of the n-terminal domain of the escherichia coli proq rna2 binding protein
36c1pdlC_
not modelled 7.2 14
PDB header:hydrolase
Chain: C: PDB Molecule:tail-associated lysozyme;
PDBTitle: fitting of gp5 in the cryoem reconstruction of the bacteriophage t42 baseplate
37d2hxja1
not modelled 6.1 14
Fold:FinO-like
Superfamily:FinO-like
Family:FinO-like
38c3emjL_
not modelled 5.8 45
PDB header:hydrolase
Chain: L: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: 2.2 a crystal structure of inorganic pyrophosphatase from2 rickettsia prowazekii (p21 form)
39c5m2oB_
not modelled 5.7 12
PDB header:protein binding
Chain: B: PDB Molecule:group i dockerin;
PDBTitle: r. flavefaciens' third scab cohesin in complex with a group 1 dockerin
40c2zuxA_
not modelled 5.5 18
PDB header:lyase
Chain: A: PDB Molecule:yesw protein;
PDBTitle: crystal structure of rhamnogalacturonan lyase yesw2 complexed with rhamnose
41c3lo0A_
not modelled 5.5 73
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis
42c5yanD_
not modelled 5.4 60
PDB header:structural protein
Chain: D: PDB Molecule:collagen;
PDBTitle: deconstructing the salt-bridge network of a computationally designed2 collagen heterotrimer

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Transmembrane helix prediction 

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