Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1231c_(-)_1374328_1374870
DateWed Jul 31 22:05:32 BST 2019
Unique Job ID07e8543a74835045
SequenceVSKPFAPRRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.525 Y:22.061 Z:29.698
Model (left) based on template c6cfwA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:monovalent cation/h+ antiporter subunit e;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
Confidence and coverage
Confidence: 51.5% Coverage: 24%
44 residues ( 24% of your sequence) have been modelled with 51.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6cfwA_



51.5 18
PDB header:membrane protein
Chain: A: PDB Molecule:monovalent cation/h+ antiporter subunit e;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
2c4cbfE_



44.5 23
PDB header:virus
Chain: E: PDB Molecule:envelope protein e;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus
3c5ireA_



34.6 27
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
4c5o6vC_



32.3 32
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
5c6bwiA_



28.0 8
PDB header:membrane protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of full length human trpm4
6c5wsnC_



27.8 23
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
7d1k4ta1



26.0 18
Fold:Long alpha-hairpin
Superfamily:Eukaryotic DNA topoisomerase I, dispensable insert domain
Family:Eukaryotic DNA topoisomerase I, dispensable insert domain
8c4b03A_



20.4 32
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
9c6co7C_



18.2 9
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: structure of the nvtrpm2 channel in complex with ca2+
10c4ltpC_



17.9 16
PDB header:transport protein
Chain: C: PDB Molecule:ion transport protein;
PDBTitle: bacterial sodium channel in high calcium, i222 space group, crystal 2
11c1p58C_



17.1 24
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
12c6rdu9_



17.1 17
PDB header:proton transport
Chain: 9: PDB Molecule:asa-9: polytomella f-atp synthase associated subunit 9;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 monomer-masked refinement
13c2mxbA_



16.9 22
PDB header:membrane protein
Chain: A: PDB Molecule:erythropoietin receptor;
PDBTitle: structure of the transmembrane domain of the mouse erythropoietin2 receptor
14c2w2eA_



15.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:aquaporin pip2-7 7;
PDBTitle: 1.15 angstrom crystal structure of p.pastoris aquaporin, aqy1, in a2 closed conformation at ph 3.5
15c4ev6E_



15.6 11
PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
16c3m9bK_



15.4 19
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
17d1dfma_



15.2 40
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BglII
18c2m6xC_



14.0 20
PDB header:membrane protein
Chain: C: PDB Molecule:p7;
PDBTitle: structure of the p7 channel of hepatitis c virus, genotype 5a
19c2kn8A_



11.4 20
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89;
PDBTitle: nmr structure of the c-terminal domain of pul89
20c6bwiB_



10.5 16
PDB header:membrane protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of full length human trpm4
21c6bwiD_



not modelled 10.5 16
PDB header:membrane protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of full length human trpm4
22c6bwiC_



not modelled 10.5 16
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.7 angstrom cryoem structure of full length human trpm4
23c6bcqB_



not modelled 10.3 14
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of trpm4 in atp bound state with long coiled coil at2 3.3 angstrom resolution
24c1ci6A_



not modelled 10.0 20
PDB header:transcription
Chain: A: PDB Molecule:transcription factor atf-4;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
25c5zx5D_



not modelled 9.6 13
PDB header:transferase
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: 3.3 angstrom structure of mouse trpm7 with edta
26d2i7pa1



not modelled 9.6 56
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
27c2mv6A_



not modelled 9.2 29
PDB header:membrane protein
Chain: A: PDB Molecule:erythropoietin receptor;
PDBTitle: solution structure of the transmembrane domain and the juxta-membrane2 domain of the erythropoietin receptor in micelles
28c4uicA_



not modelled 8.4 23
PDB header:sugar binding protein
Chain: A: PDB Molecule:surface layer protein;
PDBTitle: crystal structure of the s-layer protein rsbsc(31-844)
29c5fv8A_



not modelled 8.4 33
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
30c1d7mA_



not modelled 8.1 30
PDB header:contractile protein
Chain: A: PDB Molecule:cortexillin i;
PDBTitle: coiled-coil dimerization domain from cortexillin i
31d2i7na2



not modelled 8.0 56
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
32c3hd6A_



not modelled 8.0 17
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
33c2bbjB_



not modelled 7.9 10
PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
34c2lifA_



not modelled 7.7 38
PDB header:viral protein, membrane protein
Chain: A: PDB Molecule:core protein p21;
PDBTitle: solution structure of kkgf
35c2rsmA_



not modelled 7.6 26
PDB header:translation
Chain: A: PDB Molecule:probable peptide chain release factor c12orf65 homolog,
PDBTitle: solution structure and sirna-mediated knockdown analysis of the2 mitochondrial disease-related protein c12orf65 (ict2)
36c5fv8B_



not modelled 7.2 35
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
37c3a5tB_



not modelled 7.1 22
PDB header:transcription regulator/dna
Chain: B: PDB Molecule:transcription factor mafg;
PDBTitle: crystal structure of mafg-dna complex
38c3vjjA_



not modelled 6.9 50
PDB header:viral protein
Chain: A: PDB Molecule:p9-1;
PDBTitle: crystal structure analysis of the p9-1
39d2f9wa2



not modelled 6.6 17
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like
40c2js5B_



not modelled 6.5 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein q60c73_metca. northeast structural2 genomics consortium target mcr1
41c3vviB_



not modelled 6.3 40
PDB header:transport protein
Chain: B: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
42c3vviF_



not modelled 6.3 40
PDB header:transport protein
Chain: F: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
43c3vviC_



not modelled 6.3 40
PDB header:transport protein
Chain: C: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
44c3vviG_



not modelled 6.3 40
PDB header:transport protein
Chain: G: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
45c3vviA_



not modelled 6.3 40
PDB header:transport protein
Chain: A: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
46c3vviE_



not modelled 6.3 40
PDB header:transport protein
Chain: E: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
47c3vviH_



not modelled 6.3 40
PDB header:transport protein
Chain: H: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
48c3vviD_



not modelled 6.3 40
PDB header:transport protein
Chain: D: PDB Molecule:non selective cation channel homologous to trp channel;
PDBTitle: crystal structure of the coiled-coil domain of the transient receptor2 potential channel from gibberella zeae (trpgz)
49d2a65a1



not modelled 6.2 12
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
50c2kl5A_



not modelled 6.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yutd;
PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232
51c6b2zA_



not modelled 6.1 29
PDB header:membrane protein
Chain: A: PDB Molecule:atp synthase protein 8;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
52c6b2zL_



not modelled 6.1 29
PDB header:membrane protein
Chain: L: PDB Molecule:atp synthase protein 8;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
53c5gpdB_



not modelled 6.0 33
PDB header:dna binding protein
Chain: B: PDB Molecule:sterol regulatory element-binding protein 1;
PDBTitle: crystal structure of the binding domain of srebp from fission yeast
54c5khtD_



not modelled 5.9 32
PDB header:actin-binding protein
Chain: D: PDB Molecule:tropomyosin alpha-1 chain,general control protein gcn4;
PDBTitle: crystal structure of the n-terminal fragment of tropomyosin isoform2 tpm1.1 at 1.5 a resolution
55c3iynQ_



not modelled 5.7 17
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
56c5nikK_



not modelled 5.6 24
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
57c5b7iA_



not modelled 5.6 10
PDB header:hydrolase/unknown function
Chain: A: PDB Molecule:crispr-associated nuclease/helicase cas3 subtype i-f/ypest;
PDBTitle: cas3-acrf3 complex
58c1wq6A_



not modelled 5.5 19
PDB header:oncoprotein
Chain: A: PDB Molecule:aml1-eto;
PDBTitle: the tetramer structure of the nervy homolgy two (nhr2) domain of aml1-2 eto is critical for aml1-eto's activity
59c5ey2A_



not modelled 5.5 22
PDB header:transcription
Chain: A: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody;
PDBTitle: crystal structure of cody from bacillus cereus
60c5ed9A_



not modelled 5.4 28
PDB header:transport protein
Chain: A: PDB Molecule:sun domain-containing protein 2;
PDBTitle: crystal structure of cc1 of mouse sun2
61c5l75F_



not modelled 5.2 16
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
62c6c9aB_



not modelled 5.2 14
PDB header:membrane protein
Chain: B: PDB Molecule:two pore calcium channel protein 1;
PDBTitle: cryo-em structure of mouse tpc1 channel in the ptdins(3,5)p2-bound2 state
63c6e3yE_



not modelled 5.1 10
PDB header:signaling protein
Chain: E: PDB Molecule:receptor activity-modifying protein 1;
PDBTitle: cryo-em structure of the active, gs-protein complexed, human cgrp2 receptor
64d2vbua1



not modelled 5.1 40
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin kinase-like
Family:CTP-dependent riboflavin kinase-like
65c5aoqA_



not modelled 5.0 63
PDB header:transferase
Chain: A: PDB Molecule:torso;
PDBTitle: structural basis of neurohormone perception by the receptor tyrosine2 kinase torso
66d1u7ga_



not modelled 5.0 15
Fold:Ammonium transporter
Superfamily:Ammonium transporter
Family:Ammonium transporter

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Transmembrane helix prediction 

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