Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1237_(sugB)_1379861_1380685
DateWed Jul 31 22:05:32 BST 2019
Unique Job ID187334c69e0e591b
SequenceVGARRATYWA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.263 Y:74.738 Z:65.989
Model (left) based on template d2r6gg1
Top template information
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
Confidence and coverage
Confidence:100.0% Coverage: 99%
270 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2r6gg1



100.0 31
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
2c4tqvJ_



100.0 25
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
3c3fh6F_



100.0 19
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
4c4tqvI_



100.0 14
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
5c2r6gF_



100.0 22
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
6d2onkc1



100.0 21
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7c2onkC_



100.0 21
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
8d2r6gf2



100.0 24
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
9d3d31c1



100.0 21
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10c3d31D_



100.0 21
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
11c4ymuC_



99.9 17
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
12d3dhwa1



99.9 18
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



78.5 13
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14d2r6gf1



75.2 18
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
15c2hx6A_



30.8 22
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
16c2jwaA_



27.9 21
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
17c2ks1A_



27.9 21
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
18c2m8gX_



21.5 21
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
19c4l5eA_



16.9 13
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
20d1umqa_



14.8 4
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
21c1umqA_



not modelled 14.8 4
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
22d1fipa_



not modelled 12.7 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
23d1ntca_



not modelled 10.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
24d1etxa_



not modelled 9.2 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
25d1etob_



not modelled 8.7 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
26c3e7lD_



not modelled 7.5 25
PDB header:transcription regulator
Chain: D: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain
27c5ir6A_



not modelled 7.3 8
PDB header:oxidoreductase
Chain: A: PDB Molecule:bd-type quinol oxidase subunit i;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
28c2n2aA_



not modelled 7.2 21
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
29c1bctA_



not modelled 7.1 21
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of proteolytic fragment 163-2312 of bacterioopsin determined from nuclear magnetic3 resonance data in solution
30c1pyuD_



not modelled 6.0 31
PDB header:lyase
Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain;
PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys
31c1g2hA_



not modelled 6.0 30
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
32d1g2ha_



not modelled 6.0 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
33d2ns0a1



not modelled 5.2 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below