Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1243c_(PE_PGRS23)_1384995_1386683
DateWed Jul 31 22:05:33 BST 2019
Unique Job ID7d8fa691a5e49fde
SequenceMEYLIAAQDV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.590 Y:35.740 Z:52.582
Model (left) based on template c5xfsA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 14%
78 residues ( 14% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
513 residues ( 91%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 86% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsA_
100.0 49
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38A_
100.0 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38a1
100.0 26
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PE
4c1ygvA_
99.6 25
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment
5c3hqvB_
99.6 30
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement
6c1y0fB_
99.1 28
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule
7c3bogB_
97.7 35
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
8c3bogA_
97.7 35
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
9c2pneA_
97.7 36
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein
10c3boiB_
97.7 36
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
11c3boiA_
97.7 36
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
12c1k7qA_
95.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant
13c5ctdA_
94.1 37
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen
14c1nayC_
94.0 28
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure
15c5ctiC_
93.9 37
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen (native form)
16c2qubG_
93.7 16
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens
17c5ctdB_
93.6 31
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen
18c1satA_
92.8 15
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens
19d1kapp1
92.2 15
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
20c2zj6A_
91.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase
21c2ml3A_
not modelled 89.1 19
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
22c2ml2A_
not modelled 86.8 16
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
23c1jiwP_
not modelled 83.7 19
PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex
24d1k7ia1
not modelled 79.2 20
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
25c5szsC_
not modelled 78.8 22
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
26c2agmA_
not modelled 78.4 22
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4
27d1g9ka1
not modelled 77.2 19
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
28c3gvmA_
not modelled 74.6 11
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
29c1om8A_
not modelled 74.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta
30d1sata1
not modelled 66.5 18
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
31d1wa8a1
not modelled 66.2 14
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
32c5cxlA_
not modelled 65.2 27
PDB header:toxin
Chain: A: PDB Molecule:bifunctional hemolysin/adenylate cyclase;
PDBTitle: crystal structure of rtx domain block v of adenylate cyclase toxin2 from bordetella pertussis
33c6nb3B_
not modelled 64.2 26
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
34c5x5fC_
not modelled 64.0 27
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
35c4lwsA_
not modelled 58.6 16
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
36c4iogD_
not modelled 52.9 16
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
37c5x5bB_
not modelled 48.3 28
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
38c5i08A_
not modelled 48.3 21
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
39c4wj2A_
not modelled 45.9 17
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
40c6b7nC_
not modelled 45.6 19
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
41c6nzkB_
not modelled 45.3 18
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
42c5xlrC_
not modelled 45.3 27
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
43c6cs2A_
not modelled 42.8 25
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
44c2klwA_
not modelled 42.6 30
PDB header:de novo protein
Chain: A: PDB Molecule:(pkg)10;
PDBTitle: solution structure of an abc collagen heterotrimer reveals a2 single-register helix stabilized by electrostatic3 interactions
45c3jclC_
not modelled 40.4 21
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
46c3p4gD_
not modelled 34.1 18
PDB header:antifreeze protein
Chain: D: PDB Molecule:antifreeze protein;
PDBTitle: x-ray crystal structure of a hyperactive, ca2+-dependent, beta-helical2 antifreeze protein from an antarctic bacterium
47c6cv0C_
not modelled 32.3 18
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
48c3zbhC_
not modelled 31.5 12
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
49d1lghb_
not modelled 29.0 43
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
50c2vs0B_
not modelled 27.0 9
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
51c2kg7B_
not modelled 26.3 14
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
52c3a0mF_
not modelled 25.8 46
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
53c1wrgA_
not modelled 22.6 29
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum
54c2cuoF_
not modelled 22.3 41
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
55c2cuoC_
not modelled 22.3 41
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
56c6et5u_
not modelled 21.6 36
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
57c2w0cR_
not modelled 21.6 29
PDB header:virus
Chain: R: PDB Molecule:protein p3;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
58c3ah9F_
not modelled 20.7 46
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
59c3ah9A_
not modelled 20.3 48
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
60c3onjA_
not modelled 19.1 22
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
61c3ah9B_
not modelled 17.3 46
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
62c3ah9E_
not modelled 17.3 46
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
63c3ah9C_
not modelled 17.3 46
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
64c3ah9D_
not modelled 16.8 45
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
65c5wrgB_
not modelled 15.3 30
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
66c2cuoE_
not modelled 14.5 46
PDB header:structural protein
Chain: E: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
67c2cuoA_
not modelled 14.5 46
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
68c2cuoD_
not modelled 14.5 46
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
69c2cuoB_
not modelled 14.5 46
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
70c4krrA_
not modelled 14.2 29
PDB header:signaling protein
Chain: A: PDB Molecule:wnt inhibitor of dorsal protein;
PDBTitle: crystal structure of drosophila wntd n-terminal domain-linker2 (residues 31-240)
71c3w5mA_
not modelled 12.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative rhamnosidase;
PDBTitle: crystal structure of streptomyces avermitilis alpha-l-rhamnosidase
72c5mgzA_
not modelled 12.1 27
PDB header:transferase
Chain: A: PDB Molecule:8-demethylnovobiocic acid c(8)-methyltransferase;
PDBTitle: streptomyces spheroides novo (8-demethylnovbiocic acid2 methyltransferase) with sah
73c6ahyD_
not modelled 11.4 35
PDB header:signaling protein
Chain: D: PDB Molecule:proto-oncogene wnt-3;
PDBTitle: wnt signaling complex
74c6bjcP_
not modelled 10.3 38
PDB header:cell cycle
Chain: P: PDB Molecule:targeting protein for xklp2;
PDBTitle: tpx2_mini decorated gmpcpp-microtubule
75c6bjcT_
not modelled 10.3 38
PDB header:cell cycle
Chain: T: PDB Molecule:targeting protein for xklp2;
PDBTitle: tpx2_mini decorated gmpcpp-microtubule
76c4f0aB_
not modelled 9.7 41
PDB header:signaling protein
Chain: B: PDB Molecule:protein wnt-8;
PDBTitle: crystal structure of xwnt8 in complex with the cysteine-rich domain of2 frizzled 8
77c4rglA_
not modelled 9.6 23
PDB header:dna binding protein
Chain: A: PDB Molecule:filamentation induced by camp protein fic;
PDBTitle: crystal structure of a fic family protein (dde_2494) from2 desulfovibrio desulfuricans g20 at 2.70 a resolution
78d1cvra2
not modelled 9.1 4
Fold:Caspase-like
Superfamily:Caspase-like
Family:Gingipain R (RgpB), N-terminal domain
79c4f9iA_
not modelled 9.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:proline dehydrogenase/delta-1-pyrroline-5-carboxylate
PDBTitle: crystal structure of proline utilization a (puta) from geobacter2 sulfurreducens pca
80c2v8sV_
not modelled 6.9 22
PDB header:protein transport
Chain: V: PDB Molecule:vesicle transport through interaction with
PDBTitle: vti1b habc domain - epsinr enth domain complex
81c3g9kD_
not modelled 6.3 25
PDB header:hydrolase
Chain: D: PDB Molecule:capsule biosynthesis protein capd;
PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd
82c1k6fD_
not modelled 6.0 38
PDB header:structural protein
Chain: D: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
83c1k6fC_
not modelled 6.0 38
PDB header:structural protein
Chain: C: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
84c1k6fE_
not modelled 6.0 38
PDB header:structural protein
Chain: E: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
85c1k6fA_
not modelled 6.0 38
PDB header:structural protein
Chain: A: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
86c1k6fF_
not modelled 6.0 38
PDB header:structural protein
Chain: F: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
87c1k6fB_
not modelled 6.0 38
PDB header:structural protein
Chain: B: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
88c1cvrA_
not modelled 5.4 4
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:gingipain r;
PDBTitle: crystal structure of the arg specific cysteine proteinase gingipain r2 (rgpb)
89c2qapC_
not modelled 5.4 29
PDB header:lyase
Chain: C: PDB Molecule:fructose-1,6-bisphosphate aldolase;
PDBTitle: fructose-1,6-bisphosphate aldolase from leishmania mexicana
90c2z8jA_
not modelled 5.3 25
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of escherichia coli gamma-glutamyltranspeptidase in2 complex with azaserine prepared in the dark
91c5yqgE_
not modelled 5.2 29
PDB header:peptide binding protein
Chain: E: PDB Molecule:peptide from protein numb homolog;
PDBTitle: the structure of 14-3-3 and pnumb peptide
92c4gdxA_
not modelled 5.1 34
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase 1 heavy chain;
PDBTitle: crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite