Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1247c_(-)_1388981_1389250
DateWed Jul 31 22:05:34 BST 2019
Unique Job IDa550ab6132dbee6a
SequenceMAVVPLGEVR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.629 Y:27.556 Z:67.808
Model (left) based on template c3g5oA_
Top template information
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
Confidence and coverage
Confidence: 99.9% Coverage:100%
89 residues (100% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3g5oA_



99.9 43
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
2c3oeiB_



99.9 34
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
3d2a6qa1



99.9 29
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
4c3d55A_



99.8 33
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
5d2a6qb1



99.7 35
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3hs2H_



99.6 29
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
7c3hryA_



99.5 31
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
8c2odkD_



99.4 22
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
9d2odka1



99.3 22
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
10c3k6qB_



94.6 15
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c3bpqA_



44.6 28
PDB header:toxin
Chain: A: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
12d1ez4a2



34.4 13
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
13c5cegC_



33.2 18
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
14c2qzsA_



30.0 11
PDB header:transferase
Chain: A: PDB Molecule:glycogen synthase;
PDBTitle: crystal structure of wild-type e.coli gs in complex with adp and2 glucose(wtgsb)
15c3bpqC_



24.9 28
PDB header:toxin
Chain: C: PDB Molecule:antitoxin relb3;
PDBTitle: crystal structure of relb-rele antitoxin-toxin complex from2 methanococcus jannaschii
16c3okaA_



23.8 19
PDB header:transferase
Chain: A: PDB Molecule:gdp-mannose-dependent alpha-(1-6)-phosphatidylinositol
PDBTitle: crystal structure of corynebacterium glutamicum pimb' in complex with2 gdp-man (triclinic crystal form)
17d1grja1



22.3 22
Fold:Long alpha-hairpin
Superfamily:GreA transcript cleavage protein, N-terminal domain
Family:GreA transcript cleavage protein, N-terminal domain
18c6nklD_



22.2 15
PDB header:antitoxin
Chain: D: PDB Molecule:antitoxin vapb1;
PDBTitle: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus2 influenzae
19c4ochA_



21.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease muts2;
PDBTitle: apo structure of smr domain of muts2 from deinococcus radiodurans
20c1n0fF_



21.0 16
PDB header:biosynthetic protein
Chain: F: PDB Molecule:protein mraz;
PDBTitle: crystal structure of a cell division and cell wall2 biosynthesis protein upf0040 from mycoplasma pneumoniae:3 indication of a novel fold with a possible new conserved4 sequence motif
21d1n0ea_



not modelled 20.6 17
Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Hypothetical protein MraZ
22d1pzga2



not modelled 20.3 16
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
23c6ct6B_



not modelled 19.0 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate dehydrogenase;
PDBTitle: crystal structure of lactate dehydrogenase from eimeria maxima with2 nadh and oxamate
24c5yhhA_



not modelled 18.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized conserved protein yiim;
PDBTitle: crystal structure of yiim from geobacillus stearothermophilus
25c4xsuB_



not modelled 17.4 9
PDB header:transferase
Chain: B: PDB Molecule:alr3699 protein;
PDBTitle: crystal structure of anabaena alr3699/hepe in complex with udp and2 glucose
26c6d9tA_



not modelled 17.1 13
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase;
PDBTitle: bsha from staphylococcus aureus complexed with udp
27c2zqeA_



not modelled 16.7 14
PDB header:dna binding protein
Chain: A: PDB Molecule:muts2 protein;
PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
28c6gneB_



not modelled 16.6 12
PDB header:transferase
Chain: B: PDB Molecule:probable starch synthase 4, chloroplastic/amyloplastic;
PDBTitle: catalytic domain of starch synthase iv from arabidopsis thaliana bound2 to adp and acarbose
29d1h8ba_



not modelled 16.4 12
Fold:EF Hand-like
Superfamily:EF-hand
Family:EF-hand modules in multidomain proteins
30d2bisa1



not modelled 16.4 21
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
31d1g8ma1



not modelled 15.2 9
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
32c2m4hA_



not modelled 15.0 26
PDB header:viral protein
Chain: A: PDB Molecule:feline calicivirus vpg protein;
PDBTitle: solution structure of the core domain (10-76) of the feline2 calicivirus vpg protein
33c6ihdA_



not modelled 14.3 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal strcuture of malate dehydrogenase from metallosphaera sedula
34c1ez4B_



not modelled 14.2 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:lactate dehydrogenase;
PDBTitle: crystal structure of non-allosteric l-lactate dehydrogenase2 from lactobacillus pentosus at 2.3 angstrom resolution
35d1a5za2



not modelled 13.9 14
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
36c2jjmH_



not modelled 13.6 16
PDB header:transferase
Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein;
PDBTitle: crystal structure of a family gt4 glycosyltransferase from bacillus2 anthracis orf ba1558.
37c3wadA_



not modelled 12.9 14
PDB header:transferase
Chain: A: PDB Molecule:glycosyltransferase;
PDBTitle: crystal structure of glycosyltransferase vinc involved in the2 biosynthesis of vicenistatin
38c2p4vA_



not modelled 12.9 10
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor greb;
PDBTitle: crystal structure of the transcript cleavage factor, greb2 at 2.6a resolution
39c1grjA_



not modelled 12.6 16
PDB header:transcription regulation
Chain: A: PDB Molecule:grea protein;
PDBTitle: grea transcript cleavage factor from escherichia coli
40c4q2uM_



not modelled 12.5 10
PDB header:toxin/toxin repressor
Chain: M: PDB Molecule:antitoxin dinj;
PDBTitle: crystal structure of the e. coli dinj-yafq toxin-antitoxin complex
41d1pkxa1



not modelled 11.9 6
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
42c2v9vA_



not modelled 11.8 14
PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
43c5d00A_



not modelled 11.8 16
PDB header:transferase
Chain: A: PDB Molecule:n-acetyl-alpha-d-glucosaminyl l-malate synthase;
PDBTitle: crystal structure of bsha from b. subtilis complexed with n-2 acetylglucosaminyl-malate and ump
44c6nkoA_



not modelled 11.7 17
PDB header:unknown function
Chain: A: PDB Molecule:forh;
PDBTitle: crystal structure of forh
45c3vufA_



not modelled 11.4 18
PDB header:transferase
Chain: A: PDB Molecule:granule-bound starch synthase 1,
PDBTitle: crystal structure of rice granule bound starch synthase i catalytic2 domain in complex with adp
46c6ejiA_



not modelled 10.7 13
PDB header:transferase
Chain: A: PDB Molecule:wlac protein;
PDBTitle: structure of a glycosyltransferase
47d1uxja2



not modelled 10.6 13
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
48c4d0kC_



not modelled 10.1 14
PDB header:gene regulation
Chain: C: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit
PDBTitle: complex of chaetomium thermophilum pan2 (wd40-cs1) with pan3 (c-term)
49c4rbnD_



not modelled 10.0 23
PDB header:transferase
Chain: D: PDB Molecule:sucrose synthase:glycosyl transferases group 1;
PDBTitle: the crystal structure of nitrosomonas europaea sucrose synthase:2 insights into the evolutionary origin of sucrose metabolism in3 prokaryotes
50c5l6mA_



not modelled 9.4 25
PDB header:hydrolase
Chain: A: PDB Molecule:vapb family protein;
PDBTitle: structure of caulobacter crescentus vapbc1 (vapb1deltac:vapc1 form)
51c3nepX_



not modelled 9.3 9
PDB header:oxidoreductase
Chain: X: PDB Molecule:malate dehydrogenase;
PDBTitle: 1.55a resolution structure of malate dehydrogenase from salinibacter2 ruber
52c3c4vB_



not modelled 9.2 14
PDB header:transferase
Chain: B: PDB Molecule:predicted glycosyltransferases;
PDBTitle: structure of the retaining glycosyltransferase msha:the2 first step in mycothiol biosynthesis. organism:3 corynebacterium glutamicum : complex with udp and 1l-ins-1-4 p.
53c2r60A_



not modelled 9.0 21
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
54c3oy2A_



not modelled 8.8 26
PDB header:viral protein,transferase
Chain: A: PDB Molecule:glycosyltransferase b736l;
PDBTitle: crystal structure of a putative glycosyltransferase from paramecium2 bursaria chlorella virus ny2a
55c1v02F_



not modelled 8.7 9
PDB header:hydrolase
Chain: F: PDB Molecule:dhurrinase;
PDBTitle: crystal structure of the sorghum bicolor dhurrinase 1
56d1v02a_



not modelled 8.7 9
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Family 1 of glycosyl hydrolase
57c3s29C_



not modelled 8.7 16
PDB header:transferase
Chain: C: PDB Molecule:sucrose synthase 1;
PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications.
58d1rzua_



not modelled 8.6 15
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:Glycosyl transferases group 1
59c2p6pB_



not modelled 8.6 7
PDB header:transferase
Chain: B: PDB Molecule:glycosyl transferase;
PDBTitle: x-ray crystal structure of c-c bond-forming dtdp-d-olivose-transferase2 urdgt2
60c2gejA_



not modelled 8.5 11
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannosyltransferase (pima);
PDBTitle: crystal structure of phosphatidylinositol mannosyltransferase (pima)2 from mycobacterium smegmatis in complex with gdp-man
61c3jvoA_



not modelled 8.4 15
PDB header:viral protein
Chain: A: PDB Molecule:gp6;
PDBTitle: crystal structure of bacteriophage hk97 gp6
62c3b4uB_



not modelled 8.2 9
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
63d2csua2



not modelled 8.0 17
Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
64c5ytpA_



not modelled 7.7 22
PDB header:dna binding protein
Chain: A: PDB Molecule:ttha0139;
PDBTitle: crystal structure of ttha0139 l34a from thermus thermophilus hb8
65d1gv0a2



not modelled 7.6 13
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
66c5us5B_



not modelled 7.5 13
PDB header:structural genomics
Chain: B: PDB Molecule:upf0297 protein ef_1202;
PDBTitle: solution structure of the ireb homodimer
67d1llda2



not modelled 7.3 18
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
68c3tsaA_



not modelled 7.2 11
PDB header:transferase
Chain: A: PDB Molecule:ndp-rhamnosyltransferase;
PDBTitle: spinosyn rhamnosyltransferase spng
69c4q8jE_



not modelled 7.0 17
PDB header:hydrolase
Chain: E: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan3;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
70d7mdha2



not modelled 7.0 10
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
71d1hyha2



not modelled 6.9 14
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
72c3ncvB_



not modelled 6.9 29
PDB header:hydrolase
Chain: B: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: ngol
73c3mybA_



not modelled 6.9 17
PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase mycobacterium smegmatis
74c5b42A_



not modelled 6.9 13
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
75d1mlda2



not modelled 6.8 21
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
76d2a7wa1



not modelled 6.8 7
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:HisE-like (PRA-PH)
77c2a7wF_



not modelled 6.8 7
PDB header:hydrolase
Chain: F: PDB Molecule:phosphoribosyl-atp pyrophosphatase;
PDBTitle: crystal structure of phosphoribosyl-atp pyrophosphatase2 from chromobacterium violaceum (atcc 12472). nesg target3 cvr7
78d1i10a2



not modelled 6.7 15
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
79d9ldta2



not modelled 6.6 10
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
80c1a5zA_



not modelled 6.6 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: lactate dehydrogenase from thermotoga maritima (tmldh)
81c3gabC_



not modelled 6.4 13
PDB header:hydrolase
Chain: C: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: c-terminal domain of bacillus subtilis mutl crystal form i
82c2rreA_



not modelled 6.4 9
PDB header:nuclear protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and function of the n-terminal nucleolin binding domain of2 nuclear valocine containing protein like 2 (nvl2) harboring a3 nucleolar localization signal
83d1t2da2



not modelled 6.3 9
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
84d1ldna2



not modelled 6.2 15
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
85c3ahyD_



not modelled 6.2 11
PDB header:hydrolase
Chain: D: PDB Molecule:beta-glucosidase;
PDBTitle: crystal structure of beta-glucosidase 2 from fungus trichoderma reesei2 in complex with tris
86c2e37B_



not modelled 5.9 20
PDB header:oxidoreductase
Chain: B: PDB Molecule:l-lactate dehydrogenase;
PDBTitle: structure of tt0471 protein from thermus thermophilus
87c6fqbE_



not modelled 5.9 6
PDB header:ligase
Chain: E: PDB Molecule:cobyric acid synthase;
PDBTitle: murt/gatd peptidoglycan amidotransferase complex from streptococcus2 pneumoniae r6
88d1o6za2



not modelled 5.8 15
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
89c5he8J_



not modelled 5.6 9
PDB header:protein binding
Chain: J: PDB Molecule:helicase loader;
PDBTitle: bacterial initiation protein
90c4uupB_



not modelled 5.5 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:malate dehydrogenase;
PDBTitle: reconstructed ancestral trichomonad malate dehydrogenase in2 complex with nadh, so4, and po4
91c2lsoA_



not modelled 5.5 11
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h1x;
PDBTitle: solution nmr structure of the globular domain of human histone h1x,2 northeast structural genomics consortium (nesg) target hr7057a
92d1qc7a_



not modelled 5.4 21
Fold:alpha-alpha superhelix
Superfamily:FliG
Family:FliG
93d2cmda2



not modelled 5.4 21
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
94d1zcza1



not modelled 5.4 6
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Inosicase
95c5d17L_



not modelled 5.4 8
PDB header:dna binding protein
Chain: L: PDB Molecule:transposon tn7 transposition protein tnse;
PDBTitle: structure of the c-terminal domain of tnse at 2.85 resolution
96c5ngwA_



not modelled 5.2 9
PDB header:hydrolase
Chain: A: PDB Molecule:opgh99a;
PDBTitle: glycoside hydrolase-like protein
97d1i0za2



not modelled 5.2 13
Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
98c5ghaF_



not modelled 5.1 23
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
99c4hlnA_



not modelled 5.1 10
PDB header:transferase
Chain: A: PDB Molecule:starch synthase i;
PDBTitle: structure of barley starch synthase i in complex with2 maltooligosaccharide

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