Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1250_(-)_1394185_1395924
DateWed Jul 31 22:05:34 BST 2019
Unique Job ID54780a5ad6166559
SequenceMTTAIRRAAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.853 Y:69.940 Z:71.725
Model (left) based on template d1pw4a_
Top template information
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
Confidence and coverage
Confidence:100.0% Coverage: 72%
417 residues ( 72% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
504 residues ( 87%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1pw4a_
100.0 14
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
2c6e9oA_
100.0 19
PDB header:membrane protein
Chain: A: PDB Molecule:d-galactonate transport;
PDBTitle: e. coli d-galactonate:proton symporter mutant e133q in the outward2 substrate-bound form
3c3wdoA_
100.0 19
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
4c4zp0A_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:multidrug transporter mdfa;
PDBTitle: crystal structure of e. coli multidrug transporter mdfa in complex2 with deoxycholate
5c4ldsB_
100.0 16
PDB header:transport protein, membrane protein
Chain: B: PDB Molecule:bicyclomycin resistance protein tcab;
PDBTitle: the inward-facing structure of the glucose transporter from2 staphylococcus epidermidis
6c6gs7A_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:dipeptide and tripeptide permease a;
PDBTitle: crystal structure of peptide transporter dtpa-nanobody in glycine2 buffer
7c4cl5B_
100.0 14
PDB header:transport protein
Chain: B: PDB Molecule:nitrate transporter 1.1;
PDBTitle: crystal structure of the nitrate transporter nrt1.1 from2 arabidopsis thaliana in complex with nitrate.
8c6h7dA_
100.0 13
PDB header:membrane protein
Chain: A: PDB Molecule:sugar transport protein 10;
PDBTitle: crystal structure of a. thaliana sugar transport protein 10 in complex2 with glucose in the outward occluded state
9c4j05A_
100.0 17
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
10c6g9xB_
100.0 14
PDB header:membrane protein
Chain: B: PDB Molecule:major facilitator superfamily mfs_1;
PDBTitle: crystal structure of a mfs transporter at 2.54 angstroem resolution
11c4ikyA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:di-tripeptide abc transporter (permease);
PDBTitle: crystal structure of peptide transporter pot (e310q mutant) in complex2 with sulfate
12c6exsA_
100.0 12
PDB header:membrane protein
Chain: A: PDB Molecule:peptide abc transporter permease;
PDBTitle: crystal structure of a pot family transporter in complex with2 thioalcohol conjugated peptide.
13c4gbzA_
100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:d-xylose-proton symporter;
PDBTitle: the structure of the mfs (major facilitator superfamily) proton:xylose2 symporter xyle bound to d-glucose
14c4apsB_
100.0 13
PDB header:transport protein
Chain: B: PDB Molecule:di-or tripeptide h+ symporter;
PDBTitle: crystal structure of a pot family peptide transporter in an inward2 open conformation.
15c2gfpA_
100.0 22
PDB header:membrane protein
Chain: A: PDB Molecule:multidrug resistance protein d;
PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli
16c4w6vA_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:di-/tripeptide transporter;
PDBTitle: crystal structure of a peptide transporter from yersinia2 enterocolitica at 3 a resolution
17c6ei3A_
100.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:proton-dependent oligopeptide transporter family protein;
PDBTitle: crystal structure of auto inhibited pot family peptide transporter
18c5c65A_
100.0 13
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: structure of the human glucose transporter glut3 / slc2a3
19c2xutC_
100.0 12
PDB header:transport protein
Chain: C: PDB Molecule:proton/peptide symporter family protein;
PDBTitle: crystal structure of a proton dependent oligopeptide (pot) family2 transporter.
20c3o7pA_
100.0 15
PDB header:transport protein
Chain: A: PDB Molecule:l-fucose-proton symporter;
PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a)
21c4ybqB_
not modelled 100.0 13
PDB header:transport protein/immune system
Chain: B: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: rat glut5 with fv in the outward-open form
22c4pypA_
not modelled 100.0 12
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 2, facilitated glucose transporter
PDBTitle: crystal structure of the human glucose transporter glut1
23d1pv7a_
not modelled 100.0 13
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:LacY-like proton/sugar symporter
24c1pv7B_
not modelled 100.0 13
PDB header:transport protein
Chain: B: PDB Molecule:lactose permease;
PDBTitle: crystal structure of lactose permease with tdg
25c4lepB_
not modelled 100.0 12
PDB header:membrane protein, tranport protein
Chain: B: PDB Molecule:proton:oligopeptide symporter pot family;
PDBTitle: structural insights into substrate recognition in proton dependent2 oligopeptide transporters
26c4q65A_
not modelled 100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:dipeptide permease d;
PDBTitle: structure of the e. coli peptide transporter ybgh
27c4iu8A_
not modelled 100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
28c4iu9A_
not modelled 100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter
29c5aynA_
not modelled 100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state
30c5aymA_
not modelled 100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:solute carrier family 39 (iron-regulated transporter);
PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron
31c4m64D_
not modelled 99.8 14
PDB header:transport protein
Chain: D: PDB Molecule:melibiose carrier protein;
PDBTitle: 3d crystal structure of na+/melibiose symporter of salmonella2 typhimurium
32c6ob7A_
not modelled 99.8 14
PDB header:transport protein
Chain: A: PDB Molecule:equilibrative nucleoside transporter 1;
PDBTitle: human equilibrative nucleoside transporter-1, dilazep bound
33c3b9yA_
not modelled 92.4 11
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
34c5aezA_
not modelled 58.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:mep2;
PDBTitle: crystal structure of candida albicans mep2
35c5xpdA_
not modelled 57.4 12
PDB header:transport protein
Chain: A: PDB Molecule:sugar transporter;
PDBTitle: sugar transporter of atsweet13 in inward-facing state with a substrate2 analog
36c6nbxG_
not modelled 31.6 16
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
37c6e1kA_
not modelled 26.9 14
PDB header:membrane protein
Chain: A: PDB Molecule:two pore calcium channel protein 1;
PDBTitle: structure of attpc1(dde) reconstituted in saposin a with cat06 fab
38c2b6pA_
not modelled 18.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:lens fiber major intrinsic protein;
PDBTitle: x-ray structure of lens aquaporin-0 (aqp0) (lens mip) in an open pore2 state
39c2g9pA_
not modelled 17.4 36
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
40c3a08C_
not modelled 17.1 32
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
41c6hwhX_
not modelled 15.4 16
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
42c2d3hC_
not modelled 13.0 33
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
43c3a19A_
not modelled 13.0 33
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
44c2d3hB_
not modelled 12.9 33
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
45c2d3hA_
not modelled 12.9 33
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
46c3a19B_
not modelled 12.9 33
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
47c5klbB_
not modelled 12.7 10
PDB header:transport protein
Chain: B: PDB Molecule:ion transport protein;
PDBTitle: crystal structure of the cavab voltage-gated calcium channel(wild-2 type, 2.7a)
48c3qnqD_
not modelled 12.5 13
PDB header:membrane protein, transport protein
Chain: D: PDB Molecule:pts system, cellobiose-specific iic component;
PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system
49c3a08E_
not modelled 12.3 38
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
50c2d3hE_
not modelled 12.1 36
PDB header:structural protein
Chain: E: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
51c3a19F_
not modelled 11.2 38
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
52c3a08D_
not modelled 11.2 38
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
53c2d3hD_
not modelled 11.2 38
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
54c3a19D_
not modelled 11.1 36
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
55c3a08F_
not modelled 10.8 33
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
56c3a19E_
not modelled 10.0 36
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
57c3a19C_
not modelled 10.0 36
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4_h monoclinic, twinned crystal
58c4dveA_
not modelled 10.0 9
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
59c4djiA_
not modelled 9.2 13
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
60c2d3hF_
not modelled 8.8 35
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptides (pro-pro-gly)4-hyp-hyp-
PDBTitle: crystal structures of collagen model peptides (pro-pro-gly)2 4-hyp-hyp-gly-(pro-pro-gly)4
61c2miiA_
not modelled 8.7 17
PDB header:protein binding
Chain: A: PDB Molecule:penicillin-binding protein activator lpob;
PDBTitle: nmr structure of e. coli lpob
62c6btmC_
not modelled 8.0 8
PDB header:membrane protein
Chain: C: PDB Molecule:alternative complex iii subunit c;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
63d3cx5c2
not modelled 7.6 11
Fold:Heme-binding four-helical bundle
Superfamily:Transmembrane di-heme cytochromes
Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
64c1x1kF_
not modelled 7.3 36
PDB header:structural protein
Chain: F: PDB Molecule:host-guest peptide (pro-pro-gly)4-(pro-allohyp-
PDBTitle: host-guest peptide (pro-pro-gly)4-(pro-allohyp-gly)-(pro-2 pro-gly)4
65c4qxlA_
not modelled 7.2 21
PDB header:motor protein
Chain: A: PDB Molecule:flagellar protein flhe;
PDBTitle: crystal structure of flhe
66d2e45a1
not modelled 7.2 13
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
67c5khnB_
not modelled 6.8 14
PDB header:membrane protein
Chain: B: PDB Molecule:rnd transporter;
PDBTitle: crystal structures of the burkholderia multivorans hopanoid2 transporter hpnn
68c3abnC_
not modelled 6.7 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
69c4r0cB_
not modelled 6.7 4
PDB header:membrane protein
Chain: B: PDB Molecule:abgt putative transporter family;
PDBTitle: crystal structure of the alcanivorax borkumensis ydah transporter2 reveals an unusual topology
70c4r1iB_
not modelled 6.7 19
PDB header:membrane protein
Chain: B: PDB Molecule:aminobenzoyl-glutamate transporter;
PDBTitle: structure and function of neisseria gonorrhoeae mtrf illuminates a2 class of antimetabolite efflux pumps
71c5u1dA_
not modelled 6.4 14
PDB header:transport protein
Chain: A: PDB Molecule:antigen peptide transporter 1;
PDBTitle: cryo-em structure of the human tap atp-binding cassette transporter
72c1wa7B_
not modelled 6.1 40
PDB header:sh3 domain
Chain: B: PDB Molecule:hypothetical 28.7 kda protein in dhfr 3'region
PDBTitle: sh3 domain of human lyn tyrosine kinase in complex with a2 herpesviral ligand
73c3abnB_
not modelled 6.1 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
74c3a1hF_
not modelled 6.0 67
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
75c5aexB_
not modelled 5.8 11
PDB header:membrane protein
Chain: B: PDB Molecule:ammonium transporter mep2;
PDBTitle: crystal structure of saccharomyces cerevisiae mep2
76c3a08B_
not modelled 5.8 35
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
77c3a08A_
not modelled 5.8 35
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-oog-(ppg)4, monoclinic, twinned crystal
78c2rmsB_
not modelled 5.7 28
PDB header:transcription
Chain: B: PDB Molecule:msin3a-binding protein;
PDBTitle: solution structure of the msin3a pah1-sap25 sid complex
79c3a0mF_
not modelled 5.7 33
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
80c6oh2A_
not modelled 5.6 6
PDB header:transport protein
Chain: A: PDB Molecule:cmp-sialic acid transporter;
PDBTitle: x-ray crystal structure of the mouse cmp-sialic acid transporter in2 complex with cmp, by lipidic cubic phase
81c1wrgA_
not modelled 5.4 16
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, beta chain;
PDBTitle: light-harvesting complex 1 beta subunit from wild-type2 rhodospirillum rubrum
82c3a1hE_
not modelled 5.4 67
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
83c3a1hC_
not modelled 5.4 67
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
84c3a1hD_
not modelled 5.4 67
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure analysis of the collagen-like peptide, (ppg)4-otg-2 (ppg)4
85c3abnA_
not modelled 5.3 67
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
86c3a0aB_
not modelled 5.3 67
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
87c3a0aE_
not modelled 5.3 67
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal
88c3v5uA_
not modelled 5.2 13
PDB header:metal transport
Chain: A: PDB Molecule:uncharacterized membrane protein mj0091;
PDBTitle: structure of sodium/calcium exchanger from methanocaldococcus2 jannaschii dsm 2661
89c3a0aD_
not modelled 5.2 46
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-opg-(ppg)4, monoclinic, twinned crystal

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below