Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1251c_(-)_1395827_1399246
DateWed Jul 31 22:05:34 BST 2019
Unique Job IDcb8e1452abc2f40a
SequenceVFVTGDSIVY ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.006 Y:49.205 Z:66.512
Model (left) based on template c2wjyA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
Confidence and coverage
Confidence:100.0% Coverage: 31%
353 residues ( 31% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2wjyA_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
2c2xzlA_
100.0 25
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent helicase nam7;
PDBTitle: upf1-rna complex
3c5eaxB_
100.0 23
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna replication atp-dependent helicase/nuclease dna2;
PDBTitle: crystal structure of dna2 in complex with an ssdna
4c5mznA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:helicase sen1,helicase sen1;
PDBTitle: helicase sen1
5c4pj3A_
100.0 24
PDB header:rna binding protein
Chain: A: PDB Molecule:intron-binding protein aquarius;
PDBTitle: structural insight into the function and evolution of the spliceosomal2 helicase aquarius, structure of aquarius in complex with amppnp
6c2gk7A_
100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:regulator of nonsense transcripts 1;
PDBTitle: structural and functional insights into the human upf1 helicase core
7c4b3gA_
100.0 24
PDB header:hydrolase/rna
Chain: A: PDB Molecule:dna-binding protein smubp-2;
PDBTitle: crystal structure of ighmbp2 helicase in complex with rna
8c3jb9X_
100.0 17
PDB header:rna binding protein/rna
Chain: X: PDB Molecule:pre-mrna-splicing factor cwf11;
PDBTitle: cryo-em structure of the yeast spliceosome at 3.6 angstrom resolution
9c5wwpA_
100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:orf1ab;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus2 helicase (mers-cov nsp13)
10c5wwpB_
100.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:orf1ab;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus2 helicase (mers-cov nsp13)
11c4n0oC_
100.0 25
PDB header:hydrolase/dna
Chain: C: PDB Molecule:replicase polyprotein 1ab;
PDBTitle: complex structure of arterivirus nonstructural protein 10 (helicase)2 with dna
12c1w36G_
100.0 21
PDB header:recombination
Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain;
PDBTitle: recbcd:dna complex
13c3gp8A_
100.0 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd, putative;
PDBTitle: crystal structure of the binary complex of recd2 with dna
14c5ld2D_
100.0 21
PDB header:hydrolase
Chain: D: PDB Molecule:recbcd enzyme subunit recd;
PDBTitle: cryo-em structure of recbcd+dna complex revealing activated nuclease2 domain
15c3e1sA_
100.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:exodeoxyribonuclease v, subunit recd;
PDBTitle: structure of an n-terminal truncation of deinococcus radiodurans recd2
16c3vkwA_
100.0 18
PDB header:transferase
Chain: A: PDB Molecule:replicase large subunit;
PDBTitle: crystal structure of the superfamily 1 helicase from tomato mosaic2 virus
17c5n8oA_
100.0 17
PDB header:transferase
Chain: A: PDB Molecule:dna helicase i;
PDBTitle: cryo em structure of the conjugative relaxase trai of the f/r1 plasmid2 system
18c4c30I_
100.0 29
PDB header:hydrolase/dna
Chain: I: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of deinococcus radiodurans uvrd in2 complex with dna, form 2
19c2is6B_
100.0 26
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of uvrd-dna-adpmgf3 ternary complex
20c3lfuA_
100.0 21
PDB header:hydrolase
Chain: A: PDB Molecule:dna helicase ii;
PDBTitle: crystal structure of e. coli uvrd
21c1pjrA_
not modelled 100.0 25
PDB header:helicase
Chain: A: PDB Molecule:pcra;
PDBTitle: structure of dna helicase
22c1uaaB_
not modelled 100.0 21
PDB header:hydrolase/dna
Chain: B: PDB Molecule:protein (atp-dependent dna helicase rep.);
PDBTitle: e. coli rep helicase/dna complex
23c3upuC_
not modelled 100.0 18
PDB header:hydrolase/dna
Chain: C: PDB Molecule:atp-dependent dna helicase dda;
PDBTitle: crystal structure of the t4 phage sf1b helicase dda
24c5ftbA_
not modelled 100.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:tpr domain protein;
PDBTitle: crystal structure of pif1 helicase from bacteroides in2 complex with amppnp
25c5fhhA_
not modelled 100.0 18
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase pif1;
PDBTitle: structure of human pif1 helicase domain residues 200-641
26c2pjrF_
not modelled 100.0 20
PDB header:hydrolase/dna
Chain: F: PDB Molecule:protein (helicase pcra);
PDBTitle: helicase product complex
27c3u4qA_
not modelled 100.0 28
PDB header:hydrolase/dna
Chain: A: PDB Molecule:atp-dependent helicase/nuclease subunit a;
PDBTitle: structure of addab-dna complex at 2.8 angstroms
28d1w36d1
not modelled 99.9 26
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
29c1w36E_
not modelled 99.9 25
PDB header:recombination
Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain;
PDBTitle: recbcd:dna complex
30c5o6dB_
not modelled 99.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent dna helicase pif1;
PDBTitle: structure of scpif1 in complex with polydt and atpgs
31d1pjra1
not modelled 99.9 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
32d1w36b1
not modelled 99.9 27
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
33d1uaaa1
not modelled 99.9 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
34c6jimA_
not modelled 99.9 25
PDB header:viral protein/rna
Chain: A: PDB Molecule:helicase;
PDBTitle: viral helicase protein
35c3b85A_
not modelled 99.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:phosphate starvation-inducible protein;
PDBTitle: crystal structure of predicted phosphate starvation-induced atpase2 phoh2 from corynebacterium glutamicum
36c3dmnA_
not modelled 99.6 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative dna helicase;
PDBTitle: the crystal structure of the c-terminal domain of a possilbe dna2 helicase from lactobacillus plantarun wcfs1
37c3u44B_
not modelled 99.5 15
PDB header:hydrolase/dna
Chain: B: PDB Molecule:atp-dependent helicase/deoxyribonuclease subunit b;
PDBTitle: crystal structure of addab-dna complex
38c2l8bA_
not modelled 99.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:protein trai;
PDBTitle: trai (381-569)
39c4onbA_
not modelled 99.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated exonuclease, cas4 family;
PDBTitle: crystal structure of crispr-associated exonuclease (cas4 family) from2 pyrobaculum calidifontis jcm 11548
40c1qhhB_
not modelled 99.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:protein (pcra (subunit));
PDBTitle: structure of dna helicase with adpnp
41d1w36d2
not modelled 99.0 20
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
42c1qhhA_
not modelled 98.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:protein (pcra (subunit));
PDBTitle: structure of dna helicase with adpnp
43c2vbcA_
not modelled 98.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:dengue 4 ns3 full-length protein;
PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus
44c2wv9A_
not modelled 98.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin
PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus
45d1w36b2
not modelled 98.8 28
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
46c4ddvA_
not modelled 98.7 11
PDB header:hydrolase
Chain: A: PDB Molecule:reverse gyrase;
PDBTitle: thermotoga maritima reverse gyrase, triclinic form
47d1rifa_
not modelled 98.7 12
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:DNA helicase UvsW
48c4xqkB_
not modelled 98.7 18
PDB header:hydrolase/dna
Chain: B: PDB Molecule:llabiii;
PDBTitle: atp-dependent type isp restriction-modification enzyme llabiii bound2 to dna
49c2jlrA_
not modelled 98.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:serine protease subunit ns3;
PDBTitle: dengue virus 4 ns3 helicase in complex with amppnp
50c2qeqA_
not modelled 98.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit;
PDBTitle: crystal structure of kunjin virus ns3 helicase
51c4nl8E_
not modelled 98.7 16
PDB header:dna binding protein
Chain: E: PDB Molecule:primosome assembly protein pria;
PDBTitle: pria helicase bound to ssb c-terminal tail peptide
52c5v9xA_
not modelled 98.7 17
PDB header:hydrolase/dna
Chain: A: PDB Molecule:atp-dependent dna helicase;
PDBTitle: structure of mycobacterium smegmatis helicase lhr bound to ssdna and2 amp-pnp
53c1ymfA_
not modelled 98.7 18
PDB header:hydrolase
Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin protease ns3
PDBTitle: crystal structure of yellow fever virus ns3 helicase complexed with2 adp
54c6jdeB_
not modelled 98.7 22
PDB header:hydrolase
Chain: B: PDB Molecule:putative dna repair helicase radd;
PDBTitle: crystal structure of a dna repair protein
55c4nl4H_
not modelled 98.7 18
PDB header:dna binding protein
Chain: H: PDB Molecule:primosome assembly protein pria;
PDBTitle: pria helicase bound to adp
56d1gkub1
not modelled 98.7 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Helicase-like "domain" of reverse gyrase
57c2v6jA_
not modelled 98.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:rna helicase;
PDBTitle: kokobera virus helicase: mutant met47thr
58c1gm5A_
not modelled 98.6 15
PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction
59c4ic1D_
not modelled 98.6 19
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of sso0001
60c2z83A_
not modelled 98.6 22
PDB header:viral protein
Chain: A: PDB Molecule:helicase/nucleoside triphosphatase;
PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8
61d2eyqa3
not modelled 98.6 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
62c6hegA_
not modelled 98.6 17
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase hrpb;
PDBTitle: crystal structure of escherichia coli deah/rha helicase hrpb
63c3l0aA_
not modelled 98.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative exonuclease;
PDBTitle: crystal structure of putative exonuclease (rer070207002219) from2 eubacterium rectale at 2.19 a resolution
64c5mq0V_
not modelled 98.5 17
PDB header:splicing
Chain: V: PDB Molecule:pre-mrna-splicing factor atp-dependent rna helicase prp22;
PDBTitle: structure of a spliceosome remodeled for exon ligation
65c3oiyB_
not modelled 98.5 14
PDB header:isomerase
Chain: B: PDB Molecule:reverse gyrase helicase domain;
PDBTitle: helicase domain of reverse gyrase from thermotoga maritima
66c5okiA_
not modelled 98.5 18
PDB header:replication
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
67c5l3qB_
not modelled 98.5 17
PDB header:protein transport
Chain: B: PDB Molecule:signal recognition particle receptor subunit alpha;
PDBTitle: structure of the gtpase heterodimer of human srp54 and sralpha
68c2va8A_
not modelled 98.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:ski2-type helicase;
PDBTitle: dna repair helicase hel308
69d1pjra2
not modelled 98.5 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
70c5mqfq_
not modelled 98.5 19
PDB header:splicing
Chain: Q: PDB Molecule:protein bud31 homolog;
PDBTitle: cryo-em structure of a human spliceosome activated for step 2 of2 splicing (c* complex)
71c3rc8A_
not modelled 98.5 19
PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial;
PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment
72c2ocaA_
not modelled 98.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase uvsw;
PDBTitle: the crystal structure of t4 uvsw
73d1gl9b1
not modelled 98.4 19
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Helicase-like "domain" of reverse gyrase
74c5jb2A_
not modelled 98.4 25
PDB header:immune system
Chain: A: PDB Molecule:lgp2;
PDBTitle: crystal structure of chicken lgp2 with 5'ppp 10-mer dsrna and adp-2 alf4-mg2+ at 2.2 a resolution.
75c5lklB_
not modelled 98.4 12
PDB header:viral protein
Chain: B: PDB Molecule:genome polyprotein;
PDBTitle: crystal structure of full-lengh csfv ns3/4a
76c2eyqA_
not modelled 98.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
77c6i3oA_
not modelled 98.4 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative pre-mrna splicing factor;
PDBTitle: crystal structure of deah-box atpase prp22
78c5ylzW_
not modelled 98.4 16
PDB header:splicing
Chain: W: PDB Molecule:pre-mrna-splicing factor atp-dependent rna helicase prp22;
PDBTitle: cryo-em structure of the post-catalytic spliceosome from saccharomyces2 cerevisiae at 3.6 angstrom
79c4znlB_
not modelled 98.4 13
PDB header:viral protein
Chain: B: PDB Molecule:phage terminase large subunit;
PDBTitle: thermus phage p74-26 large terminase atpase domain bound to adp2 beryllium fluoride
80c1gl9B_
not modelled 98.4 13
PDB header:topoisomerase
Chain: B: PDB Molecule:reverse gyrase;
PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp
81c6nmiA_
not modelled 98.4 15
PDB header:transcription
Chain: A: PDB Molecule:general transcription and dna repair factor iih helicase
PDBTitle: cryo-em structure of the human tfiih core complex
82d1gm5a3
not modelled 98.4 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
83c5xdrA_
not modelled 98.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna helicase dhx15;
PDBTitle: crystal structure of human deah-box rna helicase dhx15 in complex with2 adp
84c6fwsB_
not modelled 98.4 15
PDB header:dna binding protein
Chain: B: PDB Molecule:atp-dependent dna helicase ding;
PDBTitle: structure of ding in complex with ssdna and adpbef
85c2j7pA_
not modelled 98.4 24
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
86c4on9B_
not modelled 98.4 14
PDB header:hydrolase
Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx58;
PDBTitle: dech box helicase domain
87c2og2A_
not modelled 98.4 16
PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
88d1yksa1
not modelled 98.4 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
89c5gafi_
not modelled 98.3 18
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: rnc in complex with srp
90c2f55C_
not modelled 98.3 19
PDB header:hydrolase/dna
Chain: C: PDB Molecule:polyprotein;
PDBTitle: two hepatitis c virus ns3 helicase domains complexed with the same2 strand of dna
91c6cy1B_
not modelled 98.3 20
PDB header:signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: crystal structure of signal recognition particle receptor ftsy from2 elizabethkingia anophelis
92c6iczY_
not modelled 98.3 18
PDB header:splicing
Chain: Y: PDB Molecule:atp-dependent rna helicase dhx8;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
93c2zj8A_
not modelled 98.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative ski2-type helicase;
PDBTitle: archaeal dna helicase hjm apo state in form 2
94c2zj2A_
not modelled 98.3 17
PDB header:hydrolase
Chain: A: PDB Molecule:putative ski2-type helicase;
PDBTitle: archaeal dna helicase hjm apo state in form 1
95c3b9qA_
not modelled 98.3 19
PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
96c6fa5A_
not modelled 98.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:putative mrna splicing factor;
PDBTitle: crystal structure of the deah-box helicase prp2 in complex with adp
97c4ak9A_
not modelled 98.3 21
PDB header:protein transport
Chain: A: PDB Molecule:cpftsy;
PDBTitle: structure of chloroplast ftsy from physcomitrella patens
98c5z58x_
not modelled 98.3 19
PDB header:splicing
Chain: X: PDB Molecule:smad nuclear-interacting protein 1;
PDBTitle: cryo-em structure of a human activated spliceosome (early bact) at 4.92 angstrom.
99c6c90A_
not modelled 98.3 17
PDB header:hydrolase/rna binding protein
Chain: A: PDB Molecule:exosome rna helicase mtr4,exosome rna helicase mtr4;
PDBTitle: human mtr4 helicase in complex with zcchc8-ctd
100c5agaA_
not modelled 98.3 17
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase theta;
PDBTitle: crystal structure of the helicase domain of human dna2 polymerase theta in complex with amppnp
101c1a1vA_
not modelled 98.3 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein (ns3 protein);
PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
102c2p6uA_
not modelled 98.3 14
PDB header:dna binding protein
Chain: A: PDB Molecule:afuhel308 helicase;
PDBTitle: apo structure of the hel308 superfamily 2 helicase
103c5jpqi_
not modelled 98.3 22
PDB header:ribosome
Chain: I: PDB Molecule:u3 small nucleolar rna-associated protein 21;
PDBTitle: cryo-em structure of the 90s pre-ribosome
104c2j37W_
not modelled 98.3 16
PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein (srp54);
PDBTitle: model of mammalian srp bound to 80s rncs
105c4cbhC_
not modelled 98.3 17
PDB header:hydrolase
Chain: C: PDB Molecule:serine protease ns3;
PDBTitle: pestivirus ns3 helicase
106c6o16A_
not modelled 98.3 18
PDB header:hydrolase/rna
Chain: A: PDB Molecule:deah (asp-glu-ala-his) box polypeptide 37;
PDBTitle: crystal structure of murine dhx37 in complex with rna
107c2vl7A_
not modelled 98.3 21
PDB header:unknown function
Chain: A: PDB Molecule:xpd;
PDBTitle: structure of s. tokodaii xpd4
108d1a1va1
not modelled 98.3 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
109c1zu4A_
not modelled 98.3 19
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
110c6f4aB_
not modelled 98.3 16
PDB header:hydrolase
Chain: B: PDB Molecule:suv3 helicase;
PDBTitle: yeast mitochondrial rna degradosome complex mtexo
111c5l3rC_
not modelled 98.2 18
PDB header:protein transport
Chain: C: PDB Molecule:signal recognition particle 54 kda protein, chloroplastic;
PDBTitle: structure of the gtpase heterodimer of chloroplast srp54 and ftsy from2 arabidopsis thaliana
112c2iy3A_
not modelled 98.2 25
PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein,signal recognition
PDBTitle: structure of the e. coli signal regognition particle
113c2cnwF_
not modelled 98.2 20
PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
114c5aorA_
not modelled 98.2 15
PDB header:hydrolase/rna
Chain: A: PDB Molecule:dosage compensation regulator;
PDBTitle: structure of mle rna adp alf4 complex
115c3dm5A_
not modelled 98.2 15
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling the2 ribonucleic core of the signal recognition particle from the archaeon3 pyrococcus furiosus.
116c4cbhD_
not modelled 98.2 13
PDB header:hydrolase
Chain: D: PDB Molecule:serine protease ns3;
PDBTitle: pestivirus ns3 helicase
117c2j289_
not modelled 98.2 18
PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
118c1c4oA_
not modelled 98.2 14
PDB header:replication
Chain: A: PDB Molecule:dna nucleotide excision repair enzyme uvrb;
PDBTitle: crystal structure of the dna nucleotide excision repair enzyme uvrb2 from thermus thermophilus
119d2fwra2
not modelled 98.2 18
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
120c3dmdA_
not modelled 98.2 18
PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below