Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1252c_(lprE)_1399302_1399910
DateWed Jul 31 22:05:34 BST 2019
Unique Job ID7fc00f9362bedb91
SequenceVPGVWSPPCP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.260 Y:23.314 Z:20.394
Model (left) based on template c2gjhA_
Top template information
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
Confidence and coverage
Confidence: 70.8% Coverage: 11%
23 residues ( 11% of your sequence) have been modelled with 70.8% confidence by the single highest scoring template.
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Warning: 59% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2gjhA_
70.8 30
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
2c5x7hA_
61.9 16
PDB header:transferase
Chain: A: PDB Molecule:cycloisomaltooligosaccharide glucanotransferase;
PDBTitle: crystal structure of paenibacillus sp. 598k2 cycloisomaltooligosaccharide glucanotransferase complexed with3 cycloisomaltoheptaose
3c3pdgA_
44.6 12
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
4d1gpla1
38.2 16
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Colipase-binding domain
5c6chgB_
31.5 14
PDB header:transferase
Chain: B: PDB Molecule:klla0c10945p;
PDBTitle: crystal structure of the yeast compass catalytic module
6d1uxxx_
28.4 18
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
7c2mblA_
27.3 26
PDB header:de novo protein
Chain: A: PDB Molecule:top7 fold protein top7m13;
PDBTitle: solution nmr structure of de novo designed top7 fold protein top7m13,2 northeast structural genomics consortium (nesg) target or33
8d1pj5a1
26.7 14
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
9c3pe9D_
24.8 17
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
10c3gzbC_
20.6 33
PDB header:lyase
Chain: C: PDB Molecule:putative snoal-like polyketide cyclase;
PDBTitle: crystal structure of putative snoal-like polyketide cyclase2 (yp_001182657.1) from shewanella putrefaciens cn-32 at 1.44 a3 resolution
11c2rnmC_
18.9 50
PDB header:protein fibril
Chain: C: PDB Molecule:small s protein;
PDBTitle: structure of the het-s(218-289) prion in its amyloid form obtained by2 solid-state nmr
12d1etha1
17.9 18
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Colipase-binding domain
13c6bx3K_
16.2 18
PDB header:gene regulation/transferase
Chain: K: PDB Molecule:compass component bre2;
PDBTitle: structure of histone h3k4 methyltransferase
14d2p3pa1
15.3 33
Fold:PG1388-like
Superfamily:PG1388-like
Family:PG1388-like
15c5ggfC_
15.3 7
PDB header:transferase, sugar binding protein
Chain: C: PDB Molecule:protein o-linked-mannose beta-1,2-n-
PDBTitle: crystal structure of human protein o-mannose beta-1,2-n-2 acetylglucosaminyltransferase form ii
16d2as0a1
14.5 13
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:Hypothetical RNA methyltransferase domain (HRMD)
17c5e24D_
14.2 45
PDB header:transport/dna binding/dna
Chain: D: PDB Molecule:protein hairless;
PDBTitle: structure of the su(h)-hairless-dna repressor complex
18d1dmla1
14.2 18
Fold:DNA clamp
Superfamily:DNA clamp
Family:DNA polymerase processivity factor
19d2fnja1
14.0 13
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:SPRY domain
20c3cb0B_
13.9 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase;
PDBTitle: cobr
21c2yfrA_
not modelled 13.9 12
PDB header:transferase
Chain: A: PDB Molecule:levansucrase;
PDBTitle: crystal structure of inulosucrase from lactobacillus2 johnsonii ncc533
22d2hfda1
not modelled 13.7 25
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
23c5xebC_
not modelled 13.3 26
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the envelope glycoprotein of dhori virus
24c2w1wB_
not modelled 12.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:lipolytic enzyme, g-d-s-l;
PDBTitle: native structure of a family 35 carbohydrate binding module2 from clostridium thermocellum
25c2rdyB_
not modelled 12.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:bh0842 protein;
PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans
26d2g60h1
not modelled 11.8 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
27c1qysA_
not modelled 11.2 20
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
28c2k2dA_
not modelled 10.4 12
PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c
29c4hx6D_
not modelled 10.2 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase;
PDBTitle: streptomyces globisporus c-1027 nadh:fad oxidoreductase sgce6
30d1pz5b1
not modelled 10.2 9
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
31c2qsiB_
not modelled 10.2 0
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
32c5y4uA_
not modelled 10.2 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-3;
PDBTitle: crystal structure of grx domain of grx3 from saccharomyces cerevisiae
33c4p9lA_
not modelled 9.7 12
PDB header:transport protein
Chain: A: PDB Molecule:ryanodine receptor 2;
PDBTitle: crystal structure of mouse ryanodine receptor 2 spry2 domain (1080-2 1253) disease mutant a1107m
34c6f8sD_
not modelled 9.1 23
PDB header:toxin
Chain: D: PDB Molecule:putative killer protein;
PDBTitle: toxin-antitoxin complex grata
35c5hx2E_
not modelled 9.0 18
PDB header:viral protein
Chain: E: PDB Molecule:baseplate wedge protein gp6;
PDBTitle: in vitro assembled star-shaped hubless t4 baseplate
36c2r0xA_
not modelled 8.9 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
37d2afja1
not modelled 8.9 14
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:SPRY domain
38c1dmlG_
not modelled 8.7 18
PDB header:dna binding protein/transferase
Chain: G: PDB Molecule:dna polymerase processivity factor;
PDBTitle: crystal structure of herpes simplex ul42 bound to the c-terminus of2 hsv pol
39d1fo5a_
not modelled 8.7 17
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
40c3pe9B_
not modelled 8.6 10
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
41c3igzB_
not modelled 8.6 33
PDB header:isomerase
Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase;
PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration
42c3adyA_
not modelled 8.5 25
PDB header:proton transport
Chain: A: PDB Molecule:dotd;
PDBTitle: crystal structure of dotd from legionella
43d2jelh2
not modelled 8.4 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
44c3pftA_
not modelled 8.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase;
PDBTitle: crystal structure of untagged c54a mutant flavin reductase (dszd) in2 complex with fmn from mycobacterium goodii
45c2yyoA_
not modelled 8.2 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:spry domain-containing protein 3;
PDBTitle: crystal sturcture of human spry domain
46d2fnjb1
not modelled 8.2 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
47c3m4xA_
not modelled 8.2 10
PDB header:transferase
Chain: A: PDB Molecule:nol1/nop2/sun family protein;
PDBTitle: structure of a ribosomal methyltransferase
48d2rdea2
not modelled 8.1 14
Fold:Split barrel-like
Superfamily:PilZ domain-like
Family:PilZ domain-associated domain
49d1eaqa_
not modelled 7.9 18
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:RUNT domain
50d1wosa1
not modelled 7.7 11
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
51d1bcoa1
not modelled 7.7 14
Fold:mu transposase, C-terminal domain
Superfamily:mu transposase, C-terminal domain
Family:mu transposase, C-terminal domain
52c3c12A_
not modelled 7.6 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar protein;
PDBTitle: crystal structure of flgd from xanthomonas campestris:2 insights into the hook capping essential for flagellar3 assembly
53c2ecrA_
not modelled 7.6 10
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase component (hpac) of 4-hydroxyphenylacetate
PDBTitle: crystal structure of the ligand-free form of the flavin reductase2 component (hpac) of 4-hydroxyphenylacetate 3-monooxygenase
54c5zc2B_
not modelled 7.5 25
PDB header:flavoprotein
Chain: B: PDB Molecule:p-hydroxyphenylacetate 3-hydroxylase, reductase component;
PDBTitle: acinetobacter baumannii p-hydroxyphenylacetate 3-hydroxylase (hpah),2 reductase component (c1)
55d1l6za2
not modelled 7.4 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
56d1v5va1
not modelled 7.4 13
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
57c4f07A_
not modelled 7.3 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:styrene monooxygenase component 2;
PDBTitle: structure of the styrene monooxygenase flavin reductase (smob) from2 pseudomonas putida s12
58d1cb8a2
not modelled 7.3 11
Fold:Hyaluronate lyase-like, C-terminal domain
Superfamily:Hyaluronate lyase-like, C-terminal domain
Family:Hyaluronate lyase-like, C-terminal domain
59d1igtb1
not modelled 7.2 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
60c2pcjB_
not modelled 7.2 19
PDB header:hydrolase
Chain: B: PDB Molecule:lipoprotein-releasing system atp-binding protein lold;
PDBTitle: crystal structure of abc transporter (aq_297) from aquifex aeolicus2 vf5
61c3osvC_
not modelled 7.1 14
PDB header:structural protein
Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd;
PDBTitle: the crytsal structure of flgd from p. aeruginosa
62c4madA_
not modelled 7.1 8
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of beta-galactosidase c (bgac) from bacillus2 circulans atcc 31382
63c3pe9C_
not modelled 7.1 14
PDB header:unknown function
Chain: C: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
64c3pe9A_
not modelled 7.1 14
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
65c2jacA_
not modelled 7.0 30
PDB header:electron transport
Chain: A: PDB Molecule:glutaredoxin-1;
PDBTitle: glutaredoxin grx1p c30s mutant from yeast
66d1inva_
not modelled 7.0 19
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
67d1w7ab4
not modelled 6.9 7
Fold:MutS N-terminal domain-like
Superfamily:DNA repair protein MutS, domain I
Family:DNA repair protein MutS, domain I
68d2c9wb1
not modelled 6.9 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
69c2mrpA_
not modelled 6.8 14
PDB header:ubiquitin-binding protein
Chain: A: PDB Molecule:dna damage-inducible protein 1;
PDBTitle: nmr solution structure of the ubiquitin like domain (ubl) of dna-2 damage-inducible 1 protein (ddi1)
70d1r0wa_
not modelled 6.8 9
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ABC transporter ATPase domain-like
71c6ff43_
not modelled 6.7 50
PDB header:splicing
Chain: 3: PDB Molecule:bud13 homolog;
PDBTitle: human bact spliceosome core structure
72d1ljma_
not modelled 6.5 18
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:RUNT domain
73c5oltA_
not modelled 6.4 27
PDB header:transferase
Chain: A: PDB Molecule:cellulose biosynthesis protein bcsg;
PDBTitle: crystal structure of the extramembrane domain of the cellulose2 biosynthetic protein bcsg from salmonella typhimurium
74c4qn3B_
not modelled 6.4 21
PDB header:hydrolase
Chain: B: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of neuraminidase n7
75c3m6wA_
not modelled 6.3 19
PDB header:transferase
Chain: A: PDB Molecule:rrna methylase;
PDBTitle: multi-site-specific 16s rrna methyltransferase rsmf from thermus2 thermophilus in space group p21212 in complex with s-adenosyl-l-3 methionine
76c1z47B_
not modelled 6.2 28
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative sulfate atp-2 binding cassette (abc) transporter from alicyclobacillus3 acidocaldarius
77c2l76A_
not modelled 6.1 21
PDB header:transcription
Chain: A: PDB Molecule:nfatc2-interacting protein;
PDBTitle: solution nmr structure of human nfatc2ip ubiquitin-like domain,2 nfatc2ip_244_338, nesg target ht65a/ocsp target hs00387_244_338/sgc-3 toronto
78d2f09a1
not modelled 6.1 17
Fold:Streptavidin-like
Superfamily:YdhA-like
Family:YdhA-like
79d1y71a1
not modelled 6.0 31
Fold:SH3-like barrel
Superfamily:Kinase-associated protein B-like
Family:Kinase-associated protein B-like
80c4l0zA_
not modelled 5.9 18
PDB header:transcription/dna
Chain: A: PDB Molecule:runt-related transcription factor 1;
PDBTitle: crystal structure of runx1 and ets1 bound to tcr alpha promoter2 (crystal form 2)
81d1wika_
not modelled 5.9 10
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
82c3k87B_
not modelled 5.8 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:chlorophenol-4-monooxygenase component 1;
PDBTitle: crystal structure of nadh:fad oxidoreductase (tftc) - fad2 complex
83c4r03A_
not modelled 5.7 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3836 family protein (bdi_3222) from2 parabacteroides distasonis atcc 8503 at 1.50 a resolution
84d1nldh2
not modelled 5.7 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
85c3c1sA_
not modelled 5.7 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin-1;
PDBTitle: crystal structure of grx1 in glutathionylated form
86d1vlya2
not modelled 5.7 44
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:Aminomethyltransferase folate-binding domain
87c2qckA_
not modelled 5.7 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase domain protein;
PDBTitle: crystal structure of flavin reductase domain protein (yp_831077.1)2 from arthrobacter sp. fb24 at 1.90 a resolution
88d1wiaa_
not modelled 5.7 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
89d1qgva_
not modelled 5.6 14
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:spliceosomal protein U5-15Kd
90d1i8lc_
not modelled 5.6 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
91d1c5cl2
not modelled 5.6 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
92c3ahpA_
not modelled 5.5 20
PDB header:electron transport
Chain: A: PDB Molecule:cuta1;
PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1
93c1xbsA_
not modelled 5.5 18
PDB header:transcription, cell cycle
Chain: A: PDB Molecule:dim1-like protein;
PDBTitle: crystal structure of human dim2: a dim1-like protein
94c4c87A_
not modelled 5.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:esterase;
PDBTitle: esterase lpest1 from lactobacillus plantarum wcfs1
95c3qmxA_
not modelled 5.3 20
PDB header:electron transport
Chain: A: PDB Molecule:glutaredoxin a;
PDBTitle: x-ray crystal structure of synechocystis sp. pcc 6803 glutaredoxin a
96c4l82D_
not modelled 5.1 8
PDB header:oxidoreductase
Chain: D: PDB Molecule:rifea.00250.a;
PDBTitle: structure of a putative oxidoreductase from rickettsia felis
97c2mixA_
not modelled 5.1 30
PDB header:toxin
Chain: A: PDB Molecule:venom peptide toxin;
PDBTitle: structure of a novel venom peptide toxin from sample limited terebrid2 marine snail
98d1uy4a_
not modelled 5.1 15
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
99c5d3mA_
not modelled 5.1 16
PDB header:transport protein
Chain: A: PDB Molecule:energy-coupling factor transporter atp-binding protein
PDBTitle: folate ecf transporter: amppnp bound state

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