Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1254_(-)_1401664_1402815
DateWed Jul 31 22:05:34 BST 2019
Unique Job ID60eeb9ac125ca5b5
SequenceMTLPKERAAQ ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.301 Y:20.492 Z:14.958
Model (left) based on template c3bbo2_
Top template information
PDB header:ribosome
Chain: 2: PDB Molecule:ribosomal protein l32;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
Confidence and coverage
Confidence: 16.9% Coverage: 3%
11 residues ( 3% of your sequence) have been modelled with 16.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bbo2_



16.9 36
PDB header:ribosome
Chain: 2: PDB Molecule:ribosomal protein l32;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
2c2wwbB_



12.6 28
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
3c4gn0D_



12.0 7
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
4c1ujlA_



9.1 25
PDB header:membrane protein
Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h
PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker
5c5jefA_



9.1 3
PDB header:transferase
Chain: A: PDB Molecule:nitrate/nitrite sensor protein narq;
PDBTitle: fragment of nitrate/nitrite sensor histidine kinase narq (wt) in2 asymmetric holo state
6d1rhzb_



8.7 28
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
7c2m6iC_



7.5 15
PDB header:membrane protein
Chain: C: PDB Molecule:full-length transmembrane domains of human glycine receptor
PDBTitle: putative pentameric open-channel structure of full-length2 transmembrane domains of human glycine receptor alpha1 subunit
8d1yc611



6.7 35
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Bromoviridae-like VP
9d1ijdb_



6.5 17
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
10d3bz6a2



6.4 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PSPTO2686-like
11d1m5wa_



6.3 23
Fold:TIM beta/alpha-barrel
Superfamily:Pyridoxine 5'-phosphate synthase
Family:Pyridoxine 5'-phosphate synthase
12c3j1rH_



6.2 24
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
13c3j1rR_



6.2 24
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
14c3j1rP_



6.2 24
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
15c3j1rS_



6.2 24
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
16c3j1rG_



6.2 24
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
17c3j1rE_



6.2 24
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
18c3j1rN_



6.2 24
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
19c3j1rF_



6.2 24
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
20c3j1rD_



6.2 24
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
21c3j1rQ_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
22c3j1rL_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
23c3j1rU_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
24c3j1rM_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
25c3j1rT_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
26c3j1rI_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
27c3j1rB_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
28c3j1rK_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
29c3j1rC_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
30c3j1rJ_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
31c3j1rA_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
32c3j1rO_



not modelled 6.2 24
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
33c5muuC_



not modelled 6.1 28
PDB header:virus
Chain: C: PDB Molecule:packaging enzyme p4;
PDBTitle: dsrna bacteriophage phi6 nucleocapsid
34d1nkzb_



not modelled 6.0 23
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
35c3p4hA_



not modelled 6.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna ligase, n-terminal domain protein;
PDBTitle: structures of archaeal members of the ligd 3'-phosphoesterase dna2 repair enzyme superfamily
36c5dlcC_



not modelled 5.9 23
PDB header:transferase
Chain: C: PDB Molecule:pyridoxine 5'-phosphate synthase;
PDBTitle: x-ray crystal structure of a pyridoxine 5-prime-phosphate synthase2 from pseudomonas aeruginosa
37c6dmxH_



not modelled 5.8 20
PDB header:transcription
Chain: H: PDB Molecule:transcriptional activator myb;
PDBTitle: hbz56 in complex with kix and c-myb
38c6dnqA_



not modelled 5.7 20
PDB header:transcription
Chain: A: PDB Molecule:transcriptional activator myb;
PDBTitle: hbz77 in complex with kix and c-myb
39c1vryA_



not modelled 5.7 23
PDB header:membrane protein
Chain: A: PDB Molecule:glycine receptor alpha-1 chain;
PDBTitle: second and third transmembrane domains of the alpha-12 subunit of human glycine receptor
40c2d1kC_



not modelled 5.7 33
PDB header:structural protein
Chain: C: PDB Molecule:metastasis suppressor protein 1;
PDBTitle: ternary complex of the wh2 domain of mim with actin-dnase i
41c6hk5A_



not modelled 5.6 31
PDB header:metal binding protein
Chain: A: PDB Molecule:cooj;
PDBTitle: x-ray structure of a truncated mutant of the metallochaperone cooj2 with a high-affinity nickel-binding site
42d1iq8a4



not modelled 5.5 14
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Archaeosine tRNA-guanine transglycosylase, C2 domain
43c6b2zf_



not modelled 5.5 19
PDB header:membrane protein
Chain: F: PDB Molecule:atp synthase subunit c, mitochondrial;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
44c6ijoG_



not modelled 5.4 16
PDB header:photosynthesis
Chain: G: PDB Molecule:psag;
PDBTitle: photosystem i of chlamydomonas reinhardtii
45c4l67B_



not modelled 5.3 22
PDB header:transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase pak 4;
PDBTitle: crystal structure of catalytic domain of pak4
46c3oruA_



not modelled 5.2 21
PDB header:metal binding protein
Chain: A: PDB Molecule:duf1989 family protein;
PDBTitle: crystal structure of a duf1989 family protein (tm1040_0329) from2 silicibacter sp. tm1040 at 1.11 a resolution
47c3p43A_



not modelled 5.2 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure and activities of archaeal members of the ligd 3'2 phosphoesterase dna repair enzyme superfamily
48c3m3nW_



not modelled 5.2 38
PDB header:structural protein
Chain: W: PDB Molecule:neural wiskott-aldrich syndrome protein;
PDBTitle: structure of a longitudinal actin dimer assembled by tandem w domains
49d1cmxa_



not modelled 5.2 16
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Ubiquitin carboxyl-terminal hydrolase UCH-L
50c3n9dA_



not modelled 5.1 19
PDB header:ligase
Chain: A: PDB Molecule:probable atp-dependent dna ligase;
PDBTitle: monoclinic structure of p. aeruginosa ligd phosphoesterase domain
51c3utmC_



not modelled 5.0 19
PDB header:transferase/signaling protein
Chain: C: PDB Molecule:axin-1;
PDBTitle: crystal structure of a mouse tankyrase-axin complex
52d2bbvc_



not modelled 5.0 8
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Nodaviridae-like VP

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below