Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1259_(-)_1407345_1408244
DateWed Jul 31 22:05:35 BST 2019
Unique Job ID00a12dd5dd262d6c
SequenceMNIAAESSAK ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:54.037 Y:41.112 Z:40.224
Model (left) based on template c2d3yA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8
Confidence and coverage
Confidence:100.0% Coverage: 73%
217 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2d3yA_



100.0 48
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from thermus thermophilus2 hb8
2c6ajrA_



100.0 26
PDB header:dna binding protein
Chain: A: PDB Molecule:uracil dna glycosylase superfamily protein;
PDBTitle: complex form of uracil dna glycosylase x and uracil
3c4zbzA_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: family 4 uracil-dna glycosylase from sulfolobus tokodaii (free form,2 x-ray wavelength=1.5418)
4d1ui0a_



100.0 31
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
5d1vk2a_



100.0 29
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
6c3ikbB_



100.0 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the structure of a conserved protein from streptococcus2 mutans ua159.
7c2rbaB_



100.0 16
PDB header:hydrolase/dna
Chain: B: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: structure of human thymine dna glycosylase bound to abasic and2 undamaged dna
8c2c2pA_



100.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:g/u mismatch-specific dna glycosylase;
PDBTitle: the crystal structure of mismatch specific uracil-dna2 glycosylase (mug) from deinococcus radiodurans
9d1muga_



100.0 16
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Mug-like
10c2d07A_



99.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:g/t mismatch-specific thymine dna glycosylase;
PDBTitle: crystal structure of sumo-3-modified thymine-dna glycosylase
11c5h93C_



99.6 24
PDB header:hydrolase
Chain: C: PDB Molecule:geobacter metallireducens smug1;
PDBTitle: crystal structure of geobacter metallireducens smug1
12d1oe4a_



99.4 21
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
13c5h0jA_



98.7 21
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of wt pedobacter heparinus smug2
14c2l3fA_



97.4 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a putative uracil dna glycosylase from2 methanosarcina acetivorans, northeast structural genomics consortium3 target mvr76
15c5grkA_



97.2 23
PDB header:hydrolase
Chain: A: PDB Molecule:blr0248 protein;
PDBTitle: crystal structure of uracil dna glycosylase -xanthine complex from2 bradyrhizobium diazoefficiens
16d1laue_



92.8 13
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
17d3euga_



92.0 17
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
18d2j8xa1



91.3 19
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
19c5nn7A_



90.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: kshv uracil-dna glycosylase, apo form
20c3cxmA_



90.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: leishmania naiffi uracil-dna glycosylase in complex with 5-bromouracil
21d1okba_



not modelled 89.9 14
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
22c2booA_



not modelled 88.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: the crystal structure of uracil-dna n-glycosylase (ung) from2 deinococcus radiodurans.
23c3zoqA_



not modelled 85.8 13
PDB header:hydrolase/viral protein
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: structure of bsudg-p56 complex
24d2hxma1



not modelled 85.3 15
Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Uracil-DNA glycosylase
25c3tr7A_



not modelled 69.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: structure of a uracil-dna glycosylase (ung) from coxiella burnetii
26c2owrD_



not modelled 67.7 12
PDB header:hydrolase
Chain: D: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of vaccinia virus uracil-dna glycosylase
27c5x3hA_



not modelled 67.2 14
PDB header:dna binding protein
Chain: A: PDB Molecule:uracil-dna glycosylase;
PDBTitle: the y81g mutant of the ung crystal structure from nitratifractor2 salsuginis
28c2zhxG_



not modelled 54.5 17
PDB header:hydrolase/hydrolase inhibitor
Chain: G: PDB Molecule:uracil-dna glycosylase;
PDBTitle: crystal structure of uracil-dna glycosylase from mycobacterium2 tuberculosis in complex with a proteinaceous inhibitor
29d1t6ca2



not modelled 50.0 29
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
30c5x55A_



not modelled 44.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:probable uracil-dna glycosylase;
PDBTitle: crystal structure of mimivirus uracil-dna glycosylase
31c3anyB_



not modelled 24.6 14
PDB header:lyase
Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol
32c3absD_



not modelled 24.6 14
PDB header:lyase
Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine
33c5v2gB_



not modelled 12.5 27
PDB header:de novo protein
Chain: B: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
34c5v2gA_



not modelled 12.5 27
PDB header:de novo protein
Chain: A: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
35c5v2gC_



not modelled 12.5 27
PDB header:de novo protein
Chain: C: PDB Molecule:20-mer peptide;
PDBTitle: de novo design of novel covalent constrained meso-size peptide2 scaffolds with unique tertiary structures
36d1vjla_



not modelled 10.3 24
Fold:Hypothetical protein TM0160
Superfamily:Hypothetical protein TM0160
Family:Hypothetical protein TM0160
37c5injA_



not modelled 10.2 35
PDB header:transferase
Chain: A: PDB Molecule:prenyltransferase;
PDBTitle: crystal structure of prenyltransferase prib ternary complex with l-2 tryptophan and dimethylallyl thiolodiphosphate (dmspp)
38c4v1af_



not modelled 9.7 67
PDB header:ribosome
Chain: F: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
39d1nkua_



not modelled 8.6 38
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase I (Tag)
40c1t6dB_



not modelled 8.3 28
PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
41c4ce5A_



not modelled 8.1 15
PDB header:transferase
Chain: A: PDB Molecule:at-omegata;
PDBTitle: first crystal structure of an (r)-selective omega-transaminase2 from aspergillus terreus
42d1y5ea1



not modelled 8.1 25
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
43c5ooma_



not modelled 7.5 60
PDB header:ribosome
Chain: A: PDB Molecule:16s ribosomal rna;
PDBTitle: structure of a native assembly intermediate of the human mitochondrial2 ribosome with unfolded interfacial rrna
44c6nstD_



not modelled 6.5 8
PDB header:transferase
Chain: D: PDB Molecule:branched-chain-amino-acid aminotransferase;
PDBTitle: crystal structure of branched chain amino acid aminotransferase from2 pseudomonas aeruginosa
45c3ty8A_



not modelled 6.2 29
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide 2',3'-cyclic phosphate phosphodiesterase /
PDBTitle: crystal structure of c. thermocellum pnkp ligase domain apo form
46c3nicA_



not modelled 6.2 31
PDB header:hydrolase/dna
Chain: A: PDB Molecule:eco29kir;
PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f
47d2o3bb1



not modelled 6.0 26
Fold:Nuclease A inhibitor (NuiA)
Superfamily:Nuclease A inhibitor (NuiA)
Family:Nuclease A inhibitor (NuiA)
48c4e6nC_



not modelled 5.9 29
PDB header:protein binding
Chain: C: PDB Molecule:metallophosphoesterase;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
49d1yc5a1



not modelled 5.7 13
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
50c5jqyA_



not modelled 5.3 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:aspartyl/asparaginyl beta-hydroxylase;
PDBTitle: aspartyl/asparaginyl beta-hydroxylase (asph)oxygenase and tpr domains2 in complex with manganese, n-oxalylglycine and factor x substrate3 peptide fragment(39mer-4ser)
51c5ce8B_



not modelled 5.3 8
PDB header:transferase
Chain: B: PDB Molecule:branched-chain amino acid aminotransferase;
PDBTitle: crystal structure of branched-chain aminotransferase from thermophilic2 archaea thermoproteus uzoniensis
52c3hdcA_



not modelled 5.2 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin family protein;
PDBTitle: the crystal structure of thioredoxin protein from geobacter2 metallireducens
53c2ys2A_



not modelled 5.2 40
PDB header:transferase
Chain: A: PDB Molecule:cytoplasmic tyrosine-protein kinase bmx;
PDBTitle: solution structure of the btk motif of human cytoplasmic2 tyrosine-protein kinase bmx

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite