Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1263_(amiB2)_1410437_1411825
DateWed Jul 31 22:05:35 BST 2019
Unique Job ID3372cfdd55bdebc3
SequenceVDPTDLAFAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.976 Y:60.071 Z:67.139
Model (left) based on template c6diiH_
Top template information
PDB header:hydrolase
Chain: H: PDB Molecule:fatty acid amide hydrolase;
PDBTitle: structure of arabidopsis fatty acid amide hydrolase in complex with2 methyl linolenyl fluorophosphonate
Confidence and coverage
Confidence:100.0% Coverage: 99%
456 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6diiH_



100.0 28
PDB header:hydrolase
Chain: H: PDB Molecule:fatty acid amide hydrolase;
PDBTitle: structure of arabidopsis fatty acid amide hydrolase in complex with2 methyl linolenyl fluorophosphonate
2d2f2aa1



100.0 27
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
3c4wj3A_



100.0 33
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the asparagine transamidosome from pseudomonas2 aeruginosa
4c4gysA_



100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: granulibacter bethesdensis allophanate hydrolase co-crystallized with2 malonate
5c3h0rP_



100.0 30
PDB header:ligase
Chain: P: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus
6c3a2qA_



100.0 35
PDB header:hydrolase
Chain: A: PDB Molecule:6-aminohexanoate-cyclic-dimer hydrolase;
PDBTitle: structure of 6-aminohexanoate cyclic dimer hydrolase complexed with2 substrate
7c4cp8C_



100.0 27
PDB header:hydrolase
Chain: C: PDB Molecule:allophanate hydrolase;
PDBTitle: structure of the amidase domain of allophanate hydrolase2 from pseudomonas sp strain adp
8c3kfuE_



100.0 33
PDB header:ligase/rna
Chain: E: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a;
PDBTitle: crystal structure of the transamidosome
9c5h6sB_



100.0 25
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase s179a mutant complexed with a2 substrate
10c2dc0A_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:probable amidase;
PDBTitle: crystal structure of amidase
11d1m22a_



100.0 30
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
12d1mt5a_



100.0 28
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
13c6c6gA_



100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:biuret hydrolase;
PDBTitle: an unexpected vestigial protein complex reveals the evolutionary2 origins of an s-triazine catabolic enzyme. inhibitor bound complex.
14c5h6tB_



100.0 24
PDB header:hydrolase
Chain: B: PDB Molecule:amidase;
PDBTitle: crystal structure of hydrazidase from microbacterium sp. strain hm58-2
15c4yj6A_



100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:aryl acylamidase;
PDBTitle: the crystal structure of a bacterial aryl acylamidase belonging to the2 amidase signature (as) enzymes family
16c2vyaB_



100.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:fatty-acid amide hydrolase 1;
PDBTitle: crystal structure of fatty acid amide hydrolase conjugated2 with the drug-like inhibitor pf-750
17d2gi3a1



100.0 28
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
18c4issA_



100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:allophanate hydrolase;
PDBTitle: semet-substituted kluyveromyces lactis allophanate hydrolase
19c5i8iD_



100.0 25
PDB header:hydrolase
Chain: D: PDB Molecule:urea amidolyase;
PDBTitle: crystal structure of the k. lactis urea amidolyase
20c3a1iA_



100.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:amidase;
PDBTitle: crystal structure of rhodococcus sp. n-771 amidase complexed2 with benzamide
21d1ocka_



not modelled 100.0 28
Fold:Amidase signature (AS) enzymes
Superfamily:Amidase signature (AS) enzymes
Family:Amidase signature (AS) enzymes
22c5ewqC_



not modelled 100.0 22
PDB header:hydrolase
Chain: C: PDB Molecule:amidase;
PDBTitle: the crystal structure of an amidase family protein from bacillus2 anthracis str. ames
23c4n0hA_



not modelled 100.0 22
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit a,
PDBTitle: crystal structure of s. cerevisiae mitochondrial gatfab
24d1w53a_



not modelled 44.6 11
Fold:KaiA/RbsU domain
Superfamily:KaiA/RbsU domain
Family:Phosphoserine phosphatase RsbU, N-terminal domain
25c5y6iB_



not modelled 37.4 27
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of pseudomonas aeruginosa hmgr
26c3izbF_



not modelled 25.2 16
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein rps5 (s7p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
27d1k75a_



not modelled 25.0 21
Fold:ALDH-like
Superfamily:ALDH-like
Family:L-histidinol dehydrogenase HisD
28d1h1js_



not modelled 23.8 19
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
29c2c4kD_



not modelled 23.7 28
PDB header:regulatory protein
Chain: D: PDB Molecule:phosphoribosyl pyrophosphate synthetase-associated protein
PDBTitle: crystal structure of human phosphoribosylpyrophosphate synthetase-2 associated protein 39 (pap39)
30c3r4kD_



not modelled 23.6 15
PDB header:dna binding protein
Chain: D: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution
31c5tjjA_



not modelled 23.6 18
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, iclr family;
PDBTitle: crystal structure of icir transcriptional regulator from2 alicyclobacillus acidocaldarius
32c4g4sP_



not modelled 22.8 27
PDB header:hydrolase/chaperone
Chain: P: PDB Molecule:proteasome assembly chaperone 2;
PDBTitle: structure of proteasome-pba1-pba2 complex
33d2dloa2



not modelled 22.7 27
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
34c3ilvA_



not modelled 19.8 20
PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad(+) synthetase;
PDBTitle: crystal structure of a glutamine-dependent nad(+) synthetase2 from cytophaga hutchinsonii
35c4my4A_



not modelled 19.8 15
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: crystal structure of phosphoglycerate mutase from staphylococcus2 aureus.
36c5xoeA_



not modelled 19.2 17
PDB header:transferase
Chain: A: PDB Molecule:atp-dependent 6-phosphofructokinase;
PDBTitle: crystal structure of the apo staphylococcus aureus phosphofructokinase
37c2kvuA_



not modelled 17.4 14
PDB header:transcription regulator
Chain: A: PDB Molecule:mkl/myocardin-like protein 1;
PDBTitle: solution nmr structure of sap domain of mkl/myocardin-like2 protein 1 from h.sapiens, northeast structural genomics3 consortium target target hr4547e
38d1ggaa2



not modelled 17.1 27
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
39c1ysqA_



not modelled 17.1 25
PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj;
PDBTitle: the crystal structure of transcriptional regulator yaij
40c3mjdA_



not modelled 16.3 18
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: 1.9 angstrom crystal structure of orotate phosphoribosyltransferase2 (pyre) francisella tularensis.
41c6an0A_



not modelled 16.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of histidinol dehydrogenase from elizabethkingia2 anophelis
42d1o98a1



not modelled 15.5 5
Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
43c3hgkE_



not modelled 15.1 21
PDB header:transferase
Chain: E: PDB Molecule:effector protein hopab2;
PDBTitle: crystal structure of effect protein avrptob complexed with2 kinase pto
44c2kssA_



not modelled 15.0 15
PDB header:transcription regulator
Chain: A: PDB Molecule:carotenogenesis protein cars;
PDBTitle: nmr structure of myxococcus xanthus antirepressor cars1
45c5xyiF_



not modelled 13.7 22
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein s5-b, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
46c2na9A_



not modelled 13.5 38
PDB header:signaling protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the p441a mutant of the cytokine receptor2 common subunit beta
47c3dahB_



not modelled 13.3 25
PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase;
PDBTitle: 2.3 a crystal structure of ribose-phosphate pyrophosphokinase from2 burkholderia pseudomallei
48c3mq0A_



not modelled 13.2 14
PDB header:transcription repressor
Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon;
PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr
49c2jmkA_



not modelled 13.2 10
PDB header:protein binding
Chain: A: PDB Molecule:hypothetical protein ta0956;
PDBTitle: solution structure of ta0956
50c2na8A_



not modelled 13.1 38
PDB header:membrane protein
Chain: A: PDB Molecule:cytokine receptor common subunit beta;
PDBTitle: transmembrane structure of the cytokine receptor common subunit beta
51d1y88a1



not modelled 13.0 8
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:Hypothetical protein AF1548, C-terminal domain
52c2g7uB_



not modelled 12.7 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1
53c4uc0A_



not modelled 12.2 33
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of a purine nucleoside phosphorylase (psi-nysgrc-2 029736) from agrobacterium vitis
54c2do1A_



not modelled 12.2 11
PDB header:gene regulation
Chain: A: PDB Molecule:nuclear protein hcc-1;
PDBTitle: solution structure of the sap domain of human nuclear2 protein hcc-1
55d1zrja1



not modelled 11.6 14
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
56c1zrjA_



not modelled 11.5 14
PDB header:dna binding protein
Chain: A: PDB Molecule:e1b-55kda-associated protein 5 isoform c;
PDBTitle: solution structure of the sap domain of human e1b-55kda-2 associated protein 5 isoform c
57d2do1a1



not modelled 11.5 11
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
58d1tf1a_



not modelled 11.0 16
Fold:Profilin-like
Superfamily:GAF domain-like
Family:IclR ligand-binding domain-like
59c4lnaA_



not modelled 11.0 38
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from spirosoma2 linguale dsm 74, nysgrc target 029362
60c4nsnC_



not modelled 10.8 25
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase from2 porphyromonas gingivalis atcc 33277, nysgrc target 030972,3 orthorhombic symmetry
61c2mfqB_



not modelled 10.3 61
PDB header:transferase
Chain: B: PDB Molecule:bdnf/nt-3 growth factors receptor;
PDBTitle: nmr solution structures of frs2a ptb domain with neurotrophin receptor2 trkb
62c4m1eC_



not modelled 10.3 33
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase i from2 planctomyces limnophilus dsm 3776, nysgrc target 029364.
63d1saza2



not modelled 10.1 17
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
64d1u9ya2



not modelled 9.9 36
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosylpyrophosphate synthetase-like
65c1o98A_



not modelled 9.8 5
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent
PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate
66c2yzkC_



not modelled 9.7 27
PDB header:transferase
Chain: C: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: crystal structure of orotate phosphoribosyltransferase from2 aeropyrum pernix
67d1g99a2



not modelled 9.6 13
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
68d2f48a1



not modelled 9.5 18
Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
69c5ifkC_



not modelled 9.5 38
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: purine nucleoside phosphorylase
70c1yspA_



not modelled 9.5 30
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator kdgr;
PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr.
71c5kgmA_



not modelled 9.3 7
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: 2.95a resolution structure of apo independent phosphoglycerate mutase2 from c. elegans (monoclinic form)
72c4l5cE_



not modelled 9.1 33
PDB header:transferase
Chain: E: PDB Molecule:s-methyl-5'-thioadenosine phosphorylase;
PDBTitle: methylthioadenosine phosphorylase from schistosoma mansoni in complex2 with adenine in space group p212121
73c4g07A_



not modelled 8.8 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:histidinol dehydrogenase;
PDBTitle: the crystal structure of the c366s mutant of hdh from brucella suis
74c3u88M_



not modelled 8.7 42
PDB header:transcription
Chain: M: PDB Molecule:histone-lysine n-methyltransferase 2a;
PDBTitle: crystal structure of human menin in complex with mll1 and ledgf
75c2higA_



not modelled 8.5 24
PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
76d2h5na1



not modelled 8.4 27
Fold:TerB-like
Superfamily:TerB-like
Family:PG1108-like
77d1h5wa_



not modelled 8.3 14
Fold:Upper collar protein gp10 (connector protein)
Superfamily:Upper collar protein gp10 (connector protein)
Family:Upper collar protein gp10 (connector protein)
78d1i32a2



not modelled 8.1 27
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
79c3ndqA_



not modelled 8.1 5
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor a protein 1;
PDBTitle: structure of human tfiis domain ii
80d2g82a2



not modelled 8.0 20
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
81c1ijgE_



not modelled 8.0 14
PDB header:viral protein
Chain: E: PDB Molecule:upper collar protein;
PDBTitle: structure of the bacteriophage phi29 head-tail connector2 protein
82c2wnsB_



not modelled 7.5 17
PDB header:transferase
Chain: B: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: human orotate phosphoribosyltransferase (oprtase) domain of2 uridine 5'-monophosphate synthase (umps) in complex with3 its substrate orotidine 5'-monophosphate (omp)
83d1mzva_



not modelled 7.5 16
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
84c1vbiA_



not modelled 7.5 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase;
PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8
85c3o8oC_



not modelled 7.4 11
PDB header:transferase
Chain: C: PDB Molecule:6-phosphofructokinase subunit alpha;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
86c1uasA_



not modelled 7.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase
87c2hkeB_



not modelled 7.3 22
PDB header:lyase
Chain: B: PDB Molecule:diphosphomevalonate decarboxylase, putative;
PDBTitle: mevalonate diphosphate decarboxylase from trypanosoma brucei
88c4gicB_



not modelled 7.0 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:histidinol dehydrogenase;
PDBTitle: crystal structure of a putative histidinol dehydrogenase (target psi-2 014034) from methylococcus capsulatus
89c3efhB_



not modelled 7.0 25
PDB header:transferase
Chain: B: PDB Molecule:ribose-phosphate pyrophosphokinase 1;
PDBTitle: crystal structure of human phosphoribosyl pyrophosphate2 synthetase 1
90c3igzB_



not modelled 7.0 15
PDB header:isomerase
Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase;
PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration
91c1wtjB_



not modelled 6.9 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:ureidoglycolate dehydrogenase;
PDBTitle: crystal structure of delta1-piperideine-2-carboxylate2 reductase from pseudomonas syringae pvar.tomato
92c3k2qA_



not modelled 6.8 16
PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
93c5ikjB_



not modelled 6.8 12
PDB header:transcription
Chain: B: PDB Molecule:cryptic loci regulator protein 1;
PDBTitle: structure of clr2 bound to the clr1 c-terminus
94c2xzmG_



not modelled 6.8 14
PDB header:ribosome
Chain: G: PDB Molecule:ribosomal protein s7 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
95c3p4iA_



not modelled 6.7 13
PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
96d2acfa1



not modelled 6.6 38
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
97c2w0cL_



not modelled 6.5 55
PDB header:virus
Chain: L: PDB Molecule:protein 2;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
98c2j6yB_



not modelled 6.5 12
PDB header:hydrolase
Chain: B: PDB Molecule:phosphoserine phosphatase rsbu;
PDBTitle: structural and functional characterisation of partner switching2 regulating the environmental stress response in bacillus subtilis
99c5khaA_



not modelled 6.4 17
PDB header:ligase
Chain: A: PDB Molecule:glutamine-dependent nad+ synthetase;
PDBTitle: structure of glutamine-dependent nad+ synthetase from acinetobacter2 baumannii in complex with adenosine diphosphate (adp)

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