Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1265_(-)_1413266_1413946
DateWed Jul 31 22:05:35 BST 2019
Unique Job ID2ba239c69c7007eb
SequenceMVLARPDAVF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.065 Y:28.964 Z:22.453
Model (left) based on template d2bj7a1
Top template information
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
Confidence and coverage
Confidence: 78.2% Coverage: 13%
29 residues ( 13% of your sequence) have been modelled with 78.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2bj7a1
78.2 14
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
2d1h3fa2
64.0 29
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
3d1jh3a_
60.8 35
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain
4c5cegC_
59.4 18
PDB header:toxin
Chain: C: PDB Molecule:addiction module antidote protein, copg/arc/metj family;
PDBTitle: x-ray structure of toxin/anti-toxin complex from mesorhizobium2 opportunistum
5d2hzaa1
52.6 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
6d2hzab1
48.8 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
7c1q5vB_
48.4 22
PDB header:transcription
Chain: B: PDB Molecule:nickel responsive regulator;
PDBTitle: apo-nikr
8c2bj3D_
48.0 19
PDB header:transcription
Chain: D: PDB Molecule:nickel responsive regulator;
PDBTitle: nikr-apo
9c2janD_
46.6 35
PDB header:ligase
Chain: D: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state
10c2v6zM_
45.4 21
PDB header:transferase
Chain: M: PDB Molecule:dna polymerase epsilon subunit 2;
PDBTitle: solution structure of amino-terminal domain of human dna polymerase2 epsilon subunit b
11c2ca9B_
45.3 17
PDB header:transcription
Chain: B: PDB Molecule:putative nickel-responsive regulator;
PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation
12c6otjA_
40.3 35
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of tyrosyl-trna synthetase from neisseria2 gonorrhoeae with bound l-tyr
13c1h3eA_
34.8 29
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed with wild-2 type trnatyr(gua) and with atp and tyrosinol
14c4oudA_
33.8 35
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: engineered tyrosyl-trna synthetase with the nonstandard amino acid l-2 4,4-biphenylalanine
15c3hp7A_
26.6 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hemolysin, putative;
PDBTitle: putative hemolysin from streptococcus thermophilus.
16d1dm9a_
25.9 30
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Heat shock protein 15 kD
17c1dm9A_
25.9 30
PDB header:structural genomics
Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka intergenic
PDBTitle: heat shock protein 15 kd
18d1uhwa_
25.4 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
19c2v43A_
24.8 42
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
20c2i6hA_
21.6 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu0120;
PDBTitle: structure of protein of unknown function atu0120 from agrobacterium2 tumefaciens
21d2i6ha1
not modelled 21.6 38
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Atu0120-like
22d1w4ma_
not modelled 20.5 30
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
23d2axtz1
not modelled 18.3 30
Fold:Transmembrane helix hairpin
Superfamily:PsbZ-like
Family:PsbZ-like
24c5z81A_
not modelled 17.9 35
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 15;
PDBTitle: trimeric structure of vibrio cholerae heat shock protein 15 at 2.32 angstrom resolution
25c3nmeA_
not modelled 17.0 32
PDB header:hydrolase
Chain: A: PDB Molecule:sex4 glucan phosphatase;
PDBTitle: structure of a plant phosphatase
26c6bywB_
not modelled 16.7 26
PDB header:unknown function
Chain: B: PDB Molecule:goxa;
PDBTitle: structure of goxa from pseudoalteromonas luteoviolacea
27c6fhsH_
not modelled 16.5 22
PDB header:dna binding protein
Chain: H: PDB Molecule:les2;
PDBTitle: cryoem structure of ino80core
28c5t9yA_
not modelled 16.4 38
PDB header:viral protein
Chain: A: PDB Molecule:he protein;
PDBTitle: crystal structure of the infectious salmon anemia virus (isav)2 hemagglutinin-esterase protein
29d1mdah_
not modelled 15.9 20
Fold:7-bladed beta-propeller
Superfamily:YVTN repeat-like/Quinoprotein amine dehydrogenase
Family:Methylamine dehydrogenase, H-chain
30c1oeiA_
not modelled 13.8 62
PDB header:prion protein
Chain: A: PDB Molecule:major prion protein;
PDBTitle: human prion protein 61-84
31c3kb8A_
not modelled 13.7 44
PDB header:transferase
Chain: A: PDB Molecule:hypoxanthine phosphoribosyltransferase;
PDBTitle: 2.09 angstrom resolution structure of a hypoxanthine-guanine2 phosphoribosyltransferase (hpt-1) from bacillus anthracis str. 'ames3 ancestor' in complex with gmp
32c6fmlH_
not modelled 13.7 22
PDB header:dna binding protein
Chain: H: PDB Molecule:les2;
PDBTitle: cryoem structure ino80core nucleosome complex
33d2ccaa1
not modelled 13.0 23
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
34c2nsvA_
not modelled 12.9 75
PDB header:signaling protein
Chain: A: PDB Molecule:mating pheromone en-1;
PDBTitle: nmr solution structure of the pheromone en-1
35c3kxeD_
not modelled 12.8 29
PDB header:protein binding
Chain: D: PDB Molecule:antitoxin protein pard-1;
PDBTitle: a conserved mode of protein recognition and binding in a2 pard-pare toxin-antitoxin complex
36c2cqjA_
not modelled 12.4 22
PDB header:rna binding protein
Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein
PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog
37d1c06a_
not modelled 11.3 33
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Ribosomal protein S4
38c5yhhA_
not modelled 10.4 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized conserved protein yiim;
PDBTitle: crystal structure of yiim from geobacillus stearothermophilus
39c2ys9A_
not modelled 10.1 37
PDB header:transcription
Chain: A: PDB Molecule:homeobox and leucine zipper protein homez;
PDBTitle: structure of the third homeodomain from the human homeobox2 and leucine zipper protein, homez
40d1q0oa2
not modelled 9.9 15
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
41d1v3fa_
not modelled 9.8 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
42c3mmlE_
not modelled 9.4 42
PDB header:hydrolase
Chain: E: PDB Molecule:allophanate hydrolase subunit 2;
PDBTitle: allophanate hydrolase complex from mycobacterium smegmatis, msmeg0435-2 msmeg0436
43c4u65A_
not modelled 9.3 25
PDB header:transferase/hydrolase
Chain: A: PDB Molecule:two component histidine kinase, ggdef domain protein/eal
PDBTitle: structure of the periplasmic output domain of the legionella2 pneumophila lapd ortholog cdgs9 in complex with pseudomonas3 fluorescens lapg
44c5bs1C_
not modelled 9.1 27
PDB header:chaperone
Chain: C: PDB Molecule:crrbcx-iia;
PDBTitle: crystal structure of rbcx-iia from chlamydomonas reinhardtii
45c3clqC_
not modelled 9.1 33
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a conserved protein of unknown function from2 enterococcus faecalis v583
46c3j20D_
not modelled 8.8 38
PDB header:ribosome
Chain: D: PDB Molecule:30s ribosomal protein s4p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
47d2csoa1
not modelled 8.4 31
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
48c6a68A_
not modelled 8.3 31
PDB header:exocytosis
Chain: A: PDB Molecule:calcium-dependent secretion activator 1;
PDBTitle: the crystal structure of rat calcium-dependent activator protein for2 secretion (caps) damh domain
49d2p6ra1
not modelled 8.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RecQ helicase DNA-binding domain-like
50d1vdca2
not modelled 8.0 17
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
51c5yysC_
not modelled 7.9 17
PDB header:transferase
Chain: C: PDB Molecule:l-fucokinase, l-fucose-1-p guanylyltransferase;
PDBTitle: cryo-em structure of l-fucokinase, gdp-fucose pyrophosphorylase (fkp)2 in bacteroides fragilis
52c1fryA_
not modelled 7.9 42
PDB header:antimicrobial protein
Chain: A: PDB Molecule:myeloid antimicrobial peptide;
PDBTitle: the solution structure of sheep myeloid antimicrobial2 peptide, residues 1-29 (smap29)
53c3tsyA_
not modelled 7.8 29
PDB header:ligase, transferase
Chain: A: PDB Molecule:fusion protein 4-coumarate--coa ligase 1, resveratrol
PDBTitle: 4-coumaroyl-coa ligase::stilbene synthase fusion protein
54c1lnsA_
not modelled 7.8 24
PDB header:hydrolase
Chain: A: PDB Molecule:x-prolyl dipeptidyl aminopeptidase;
PDBTitle: crystal structure analysis of the x-prolyl dipeptidyl aminopeptidase2 from lactococcus lactis
55c2jyaA_
not modelled 7.7 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein atu1810;
PDBTitle: nmr solution structure of protein atu1810 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr23,3 ontario centre for structural proteomics target atc1776
56c6in8A_
not modelled 7.7 44
PDB header:membrane protein
Chain: A: PDB Molecule:sigma factor algu regulatory protein mucb;
PDBTitle: crystal structure of mucb
57c5n81B_
not modelled 7.4 22
PDB header:ligase
Chain: B: PDB Molecule:tyrocidine synthase 1;
PDBTitle: crystal structure of an engineered tyca variant in complex with an o-2 propargyl-beta-tyr-amp analog
58d1y88a1
not modelled 7.3 27
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:Hypothetical protein AF1548, C-terminal domain
59c2k48A_
not modelled 7.2 50
PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: nmr structure of the n-terminal coiled coil domain of the2 andes hantavirus nucleocapsid protein
60d2j01p1
not modelled 7.2 27
Fold:Ribosomal proteins L15p and L18e
Superfamily:Ribosomal proteins L15p and L18e
Family:Ribosomal proteins L15p and L18e
61d1p9ka_
not modelled 6.9 26
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:YbcJ-like
62c2l3oA_
not modelled 6.9 43
PDB header:cytokine
Chain: A: PDB Molecule:interleukin 3;
PDBTitle: solution structure of murine interleukin 3
63c1v0dA_
not modelled 6.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:dna fragmentation factor 40 kda subunit;
PDBTitle: crystal structure of caspase-activated dnase (cad)
64d1v0da_
not modelled 6.8 15
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Caspase-activated DNase, CAD (DffB, DFF40)
65c3jcuz_
not modelled 6.6 26
PDB header:membrane protein
Chain: Z: PDB Molecule:photosystem ii reaction center protein z;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
66d1fsha_
not modelled 6.6 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:DEP domain
67c2k8vA_
not modelled 6.5 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin domain-containing protein 12;
PDBTitle: solution structure of oxidised erp18
68c5wlqA_
not modelled 6.5 22
PDB header:motor protein
Chain: A: PDB Molecule:capsid assembly scaffolding protein,myosin-7,microtubule-
PDBTitle: crystal structure of amino acids 1677-1755 of human beta cardiac2 myosin fused to gp7 and eb1
69c3pjvD_
not modelled 6.5 15
PDB header:lyase
Chain: D: PDB Molecule:cyclic dimeric gmp binding protein;
PDBTitle: structure of pseudomonas fluorescence lapd periplasmic domain
70d1o89a2
not modelled 6.3 27
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
71c2dakA_
not modelled 6.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin carboxyl-terminal hydrolase 5;
PDBTitle: solution structure of the second uba domain in the human2 ubiquitin specific protease 5 (isopeptidase 5)
72c5z08C_
not modelled 6.2 38
PDB header:cell cycle
Chain: C: PDB Molecule:cenp-k;
PDBTitle: the crystal structure of kinetochore subunits cenp-h/i/k triple2 complex
73c4aukB_
not modelled 6.2 86
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna large subunit methyltransferase m;
PDBTitle: crystal structure of c2498 2'-o-ribose methyltransferase rlmm from2 escherichia coli
74d1zc3b1
not modelled 6.0 32
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Pleckstrin-homology domain (PH domain)
75c2xvcA_
not modelled 6.0 50
PDB header:cell cycle
Chain: A: PDB Molecule:escrt-iii;
PDBTitle: molecular and structural basis of escrt-iii recruitment to membranes2 during archaeal cell division
76c2kkgA_
not modelled 5.9 62
PDB header:membrane protein
Chain: A: PDB Molecule:major prion protein;
PDBTitle: nmr structure of the octarepeat region of prion protein2 bound to pentosan polysulfate
77c2wttN_
not modelled 5.8 31
PDB header:transcription
Chain: N: PDB Molecule:tumor protein p73;
PDBTitle: structure of the human p73 tetramerization domain (crystal form ii)
78d1jmxa5
not modelled 5.6 25
Fold:Streptavidin-like
Superfamily:Quinohemoprotein amine dehydrogenase A chain, domain 3
Family:Quinohemoprotein amine dehydrogenase A chain, domain 3
79c5mstA_
not modelled 5.5 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioester reductase domain-containing protein;
PDBTitle: structure of the a domain of carboxylic acid reductase (car) from2 segniliparus rugosus in complex with amp and a co-purified carboxylic3 acid
80c5dudB_
not modelled 5.4 100
PDB header:unknown function
Chain: B: PDB Molecule:ybgj;
PDBTitle: crystal structure of e. coli ybgjk
81d1jmla_
not modelled 5.4 75
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Immunoglobulin-binding domains
Family:Immunoglobulin-binding domains
82c2wttH_
not modelled 5.3 31
PDB header:transcription
Chain: H: PDB Molecule:tumor protein p73;
PDBTitle: structure of the human p73 tetramerization domain (crystal form ii)
83c3u1dA_
not modelled 5.2 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the structure of a protein with a gntr superfamily winged-helix-turn-2 helix domain from halomicrobium mukohataei.
84d1mwva1
not modelled 5.1 20
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Catalase-peroxidase KatG
85d1v9va1
not modelled 5.1 31
Fold:Bromodomain-like
Superfamily:MAST3 pre-PK domain-like
Family:MAST3 pre-PK domain-like
86d2uubd1
not modelled 5.1 40
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Ribosomal protein S4

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