Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1269c_(-)_1418585_1418959
DateWed Jul 31 22:05:36 BST 2019
Unique Job IDfec2a179a2216ed8
SequenceMTTMITLRRR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.590 Y:24.684 Z:21.305
Model (left) based on template d1o0wa2
Top template information
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
Confidence and coverage
Confidence: 43.1% Coverage: 21%
26 residues ( 21% of your sequence) have been modelled with 43.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1o0wa2



43.1 31
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
2d1qu6a2



41.8 26
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
3d1x49a1



40.9 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
4c2khxA_



38.3 26
PDB header:gene regulation,nuclear protein
Chain: A: PDB Molecule:ribonuclease 3;
PDBTitle: drosha double-stranded rna binding motif
5c2n3hA_



35.8 22
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd2 (viz. drb4(81-151))
6d1x47a1



34.5 22
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
7d1x48a1



32.4 26
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
8d1qu6a1



31.3 26
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
9d1t4na_



29.9 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
10c2n3gA_



28.0 26
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of drb4 dsrbd1 (viz. drb4(1-72))
11c3adjA_



27.5 23
PDB header:gene regulation
Chain: A: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
12d1t4lb_



26.7 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
13c4kt3B_



24.6 24
PDB header:hydrolase
Chain: B: PDB Molecule:putative lipoprotein;
PDBTitle: structure of a type vi secretion system effector-immunity complex from2 pseudomonas protegens
14d1ixta_



21.7 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Conotoxin
15c1ixtA_



21.7 50
PDB header:toxin
Chain: A: PDB Molecule:spasmodic protein tx9a-like protein;
PDBTitle: structure of a novel p-superfamily spasmodic conotoxin2 reveals an inhibitory cystine knot motif
16c1h2iG_



21.3 27
PDB header:dna binding protein
Chain: G: PDB Molecule:dna repair protein rad52 homolog;
PDBTitle: human rad52 protein, n-terminal domain
17c1vw45_



21.0 26
PDB header:ribosome
Chain: 5: PDB Molecule:54s ribosomal protein l3, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
18c2mdrA_



20.8 9
PDB header:hydrolase
Chain: A: PDB Molecule:double-stranded rna-specific adenosine deaminase;
PDBTitle: solution structure of the third double-stranded rna-binding domain2 (dsrbd3) of human adenosine-deaminase adar1
19d1t4oa_



20.5 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
20c1t4oA_



20.5 19
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease iii;
PDBTitle: crystal structure of rnt1p dsrbd
21c3adlA_



not modelled 19.7 19
PDB header:gene regulation/rna
Chain: A: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: structure of trbp2 and its molecule implications for mirna processing
22c5kwpA_



not modelled 18.8 29
PDB header:de novo protein
Chain: A: PDB Molecule:designed peptide nc_eeh_d2;
PDBTitle: nmr solution structure of designed peptide nc_eeh_d2
23d2nuga2



not modelled 17.2 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
24c2aivA_



not modelled 17.0 11
PDB header:transport protein
Chain: A: PDB Molecule:fragment of nucleoporin nup116/nsp116;
PDBTitle: multiple conformations in the ligand-binding site of the yeast nuclear2 pore targeting domain of nup116p
25c2zalD_



not modelled 17.0 18
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
26c4ce4h_



not modelled 15.3 19
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
27c2vdaB_



not modelled 14.9 36
PDB header:protein transport
Chain: B: PDB Molecule:maltoporin;
PDBTitle: solution structure of the seca-signal peptide complex
28c4pv3D_



not modelled 14.3 20
PDB header:hydrolase
Chain: D: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-dependent plant-type l-asparaginase2 from phaseolus vulgaris in complex with na+ cations
29c4v1ah_



not modelled 13.8 19
PDB header:ribosome
Chain: H: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
30c2gezF_



not modelled 12.8 22
PDB header:hydrolase
Chain: F: PDB Molecule:l-asparaginase beta subunit;
PDBTitle: crystal structure of potassium-independent plant asparaginase
31c2msoA_



not modelled 12.6 50
PDB header:toxin
Chain: A: PDB Molecule:conotoxin gm9.1;
PDBTitle: solution study of cgm9a
32c3adiC_



not modelled 12.4 14
PDB header:gene regulation/rna
Chain: C: PDB Molecule:f21m12.9 protein;
PDBTitle: structure of arabidopsis hyl1 and its molecular implications for mirna2 processing
33d2cpna1



not modelled 11.9 19
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
34d1zata2



not modelled 11.1 13
Fold:L,D-transpeptidase pre-catalytic domain-like
Superfamily:L,D-transpeptidase pre-catalytic domain-like
Family:L,D-transpeptidase pre-catalytic domain-like
35c1jn9B_



not modelled 11.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
36c1t3mD_



not modelled 11.0 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
37c1t3mB_



not modelled 11.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of the isoaspartyl peptidase with l-asparaginase2 activity from e. coli
38c2n3fA_



not modelled 10.6 21
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein 4;
PDBTitle: solution structure of both dsrbds of drb4 along with linker (viz.2 drb4(1-153))
39c2zalB_



not modelled 10.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of e. coli isoaspartyl aminopeptidase/l-asparaginase2 in complex with l-aspartate
40c2ltsA_



not modelled 10.3 23
PDB header:rna binding protein
Chain: A: PDB Molecule:protein rde-4;
PDBTitle: solution structure of rde-4(150-235)
41d1uila_



not modelled 10.3 13
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
42c3llhB_



not modelled 10.0 32
PDB header:rna binding protein
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the first dsrbd of tar rna-binding protein 2
43c2lrsA_



not modelled 9.9 29
PDB header:hydrolase
Chain: A: PDB Molecule:endoribonuclease dicer homolog 1;
PDBTitle: the second dsrbd domain from a. thaliana dicer-like 1
44d1z1ba1



not modelled 9.8 18
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:lambda integrase N-terminal domain
45c1kjkA_



not modelled 9.8 18
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: solution structure of the lambda integrase amino-terminal2 domain
46c2q5xA_



not modelled 9.8 22
PDB header:protein transport
Chain: A: PDB Molecule:nuclear pore complex protein nup98;
PDBTitle: crystal structure of the c-terminal domain of hnup98
47d1di2a_



not modelled 9.6 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
48c1jn9D_



not modelled 9.5 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: structure of putative asparaginase encoded by escherichia coli ybik2 gene
49c1k2xB_



not modelled 9.5 21
PDB header:hydrolase
Chain: B: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
50c1k2xD_



not modelled 9.5 21
PDB header:hydrolase
Chain: D: PDB Molecule:putative l-asparaginase;
PDBTitle: crystal structure of putative asparaginase encoded by escherichia coli2 ybik gene
51c6htuA_



not modelled 9.4 21
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: structure of hstau1 dsrbd3-4 in complex with arf1 rna
52d1stua_



not modelled 9.0 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
53d2b7ta1



not modelled 9.0 36
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
54c6rdu9_



not modelled 8.7 36
PDB header:proton transport
Chain: 9: PDB Molecule:asa-9: polytomella f-atp synthase associated subunit 9;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 monomer-masked refinement
55c5npgA_



not modelled 8.6 27
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious, isoform f;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd1
56d2bj7a1



not modelled 8.6 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
57c4uutA_



not modelled 7.6 19
PDB header:transcription
Chain: A: PDB Molecule:homeotic protein ultrabithorax;
PDBTitle: crystal structure of the ultrabithorax protein
58c3kepA_



not modelled 7.5 24
PDB header:protein transport, rna binding protein
Chain: A: PDB Molecule:nucleoporin nup145;
PDBTitle: crystal structure of the autoproteolytic domain from the nuclear pore2 complex component nup145 from saccharomyces cerevisiae
59c2zakB_



not modelled 7.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase precursor;
PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation
60c4gduB_



not modelled 7.3 27
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of sulfate-bound human l-asparaginase protein
61d2hzaa1



not modelled 7.2 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
62c1p4vA_



not modelled 7.0 26
PDB header:hydrolase
Chain: A: PDB Molecule:n(4)-(beta-n-acetylglucosaminyl)-l-asparaginase
PDBTitle: crystal structure of the glycosylasparaginase precursor2 d151n mutant with glycine
63d2hzab1



not modelled 6.9 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
64c3rv0B_



not modelled 6.5 22
PDB header:rna binding protein
Chain: B: PDB Molecule:k. polysporus dcr1;
PDBTitle: crystal structure of k. polysporus dcr1 without the c-terminal dsrbd
65c4oogC_



not modelled 6.4 17
PDB header:hydrolase/rna
Chain: C: PDB Molecule:ribonuclease 3;
PDBTitle: crystal structure of yeast rnase iii (rnt1p) complexed with the2 product of dsrna processing
66d1ekza_



not modelled 6.2 17
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
67c2gacD_



not modelled 6.2 26
PDB header:hydrolase
Chain: D: PDB Molecule:glycosylasparaginase;
PDBTitle: t152c mutant glycosylasparaginase from flavobacterium2 meningosepticum
68d1kn0a_



not modelled 6.2 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:The homologous-pairing domain of Rad52 recombinase
69d1whna_



not modelled 5.9 17
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
70c2vi6F_



not modelled 5.9 19
PDB header:transcription
Chain: F: PDB Molecule:homeobox protein nanog;
PDBTitle: crystal structure of the nanog homeodomain
71c1qu6A_



not modelled 5.6 25
PDB header:transferase
Chain: A: PDB Molecule:protein kinase pkr;
PDBTitle: structure of the double-stranded rna-binding domain of the2 protein kinase pkr reveals the molecular basis of its3 dsrna-mediated activation
72d2b7va1



not modelled 5.5 23
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
73d2rh2a1



not modelled 5.4 44
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:R67 dihydrofolate reductase
74d1cvra1



not modelled 5.1 39
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Gingipain R (RgpB), C-terminal domain
75c5npaA_



not modelled 5.1 17
PDB header:rna binding protein
Chain: A: PDB Molecule:loquacious;
PDBTitle: solution structure of drosophila melanogaster loquacious dsrbd2
76c5hoxE_



not modelled 5.0 23
PDB header:de novo protein
Chain: E: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin.2 synchrotron data set. (lvffaedcgsnkcaii(sar)lmv).
77c5hoxC_



not modelled 5.0 23
PDB header:de novo protein
Chain: C: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin.2 synchrotron data set. (lvffaedcgsnkcaii(sar)lmv).
78c5hoxB_



not modelled 5.0 23
PDB header:de novo protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin.2 synchrotron data set. (lvffaedcgsnkcaii(sar)lmv).
79c5hoyA_



not modelled 5.0 23
PDB header:de novo protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
80c5hoyB_



not modelled 5.0 23
PDB header:de novo protein
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
81c5hoyE_



not modelled 5.0 23
PDB header:de novo protein
Chain: E: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
82c5hoxF_



not modelled 5.0 23
PDB header:de novo protein
Chain: F: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin.2 synchrotron data set. (lvffaedcgsnkcaii(sar)lmv).
83c5hoyD_



not modelled 5.0 23
PDB header:de novo protein
Chain: D: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
84c5hoyC_



not modelled 5.0 23
PDB header:de novo protein
Chain: C: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
85c5hoyF_



not modelled 5.0 23
PDB header:de novo protein
Chain: F: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin. x-2 ray diffractometer data set. (lvffaedcgsnkcaii(sar)lmv).
86c5hoxA_



not modelled 5.0 23
PDB header:de novo protein
Chain: A: PDB Molecule:amyloid beta a4 protein;
PDBTitle: x-ray crystallographic structure of an a-beta 17_36 beta-hairpin.2 synchrotron data set. (lvffaedcgsnkcaii(sar)lmv).

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