Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1270c_(lprA)_1419020_1419754
DateWed Jul 31 22:05:36 BST 2019
Unique Job ID91324ac340e87512
SequenceMKHPPCSVVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.007 Y:45.781 Z:45.139
Model (left) based on template c3mhaB_
Top template information
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
Confidence and coverage
Confidence:100.0% Coverage: 79%
193 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3mhaB_
100.0 38
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein lprg;
PDBTitle: crystal structure of lprg from mycobacterium tuberculosis bound to pim
2d2byoa1
100.0 30
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:LppX-like
3c4qa8A_
100.0 24
PDB header:lipid transport
Chain: A: PDB Molecule:putative lipoprotein lprf;
PDBTitle: crystal structure of lprf from mycobacterium bovis
4c3buuB_
98.4 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized lola superfamily protein ne2245;
PDBTitle: crystal structure of lola superfamily protein ne2245 from2 nitrosomonas europaea
5c4mxtA_
97.4 13
PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an outer-membrane lipoprotein carrier protein2 (bacuni_04723) from bacteroides uniformis atcc 8492 at 1.40 a3 resolution
6c6in8A_
96.6 15
PDB header:membrane protein
Chain: A: PDB Molecule:sigma factor algu regulatory protein mucb;
PDBTitle: crystal structure of mucb
7c3bk5A_
95.6 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative outer membrane lipoprotein-sorting protein;
PDBTitle: crystal structure of putative outer membrane lipoprotein-sorting2 protein domain from vibrio parahaemolyticus
8c2v43A_
94.6 12
PDB header:regulator
Chain: A: PDB Molecule:sigma-e factor regulatory protein rseb;
PDBTitle: crystal structure of rseb: a sensor for periplasmic stress2 response in e. coli
9c4z48B_
91.9 10
PDB header:structural biology, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1329 family protein (despig_00262) from2 desulfovibrio piger atcc 29098 at 1.75 a resolution
10c3woaA_
67.1 12
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
11c2w7qB_
65.0 8
PDB header:protein transport
Chain: B: PDB Molecule:outer-membrane lipoprotein carrier protein;
PDBTitle: structure of pseudomonas aeruginosa lola
12d1mhna_
24.4 14
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
13d1iwla_
24.1 13
Fold:LolA-like prokaryotic lipoproteins and lipoprotein localization factors
Superfamily:Prokaryotic lipoproteins and lipoprotein localization factors
Family:Outer-membrane lipoproteins carrier protein LolA
14c4a4fA_
22.6 15
PDB header:rna binding protein
Chain: A: PDB Molecule:survival of motor neuron-related-splicing factor 30;
PDBTitle: solution structure of spf30 tudor domain in complex with symmetrically2 dimethylated arginine
15c1g5vA_
21.1 14
PDB header:translation
Chain: A: PDB Molecule:survival motor neuron protein 1;
PDBTitle: solution structure of the tudor domain of the human smn2 protein
16c2d9tA_
18.8 9
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: solution structure of the tudor domain of tudor domain2 containing protein 3 from mouse
17c3pnwX_
18.7 9
PDB header:protein binding/immune system
Chain: X: PDB Molecule:tudor domain-containing protein 3;
PDBTitle: crystal structure of the tudor domain of human tdrd3 in complex with2 an anti-tdrd3 fab
18d2d9ta1
16.4 9
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
19d1ueba2
12.2 19
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
20c3uc0B_
11.1 28
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope protein;
PDBTitle: crystal structure of domain i of the envelope glycoprotein ectodomain2 from dengue virus serotype 4 in complex with the fab fragment of the3 chimpanzee monoclonal antibody 5h2
21c6gwjD_
not modelled 9.0 10
PDB header:rna binding protein
Chain: D: PDB Molecule:ekc/keops complex subunit gon7;
PDBTitle: protein complex
22c6h3iA_
not modelled 8.9 21
PDB header:protein transport
Chain: A: PDB Molecule:protein involved in gliding motility spra;
PDBTitle: structural snapshots of the type 9 protein translocon
23c4onyB_
not modelled 6.9 22
PDB header:transport protein
Chain: B: PDB Molecule:extracellular solute-binding protein family 5;
PDBTitle: crystal structure of a abc transporter, periplasmic substrate-binding2 protein from brucella melitensis
24c2m1hA_
not modelled 6.7 6
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor s-ii;
PDBTitle: solution structure of a pwwp domain from trypanosoma brucei
25c5e7tI_
not modelled 6.5 23
PDB header:viral protein
Chain: I: PDB Molecule:major structural protein 1;
PDBTitle: structure of the tripod (bppuct-a-l) from the baseplate of2 bacteriophage tuc2009
26d1x9la_
not modelled 6.0 15
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
27d1j0ha2
not modelled 6.0 15
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
28c6epzA_
not modelled 6.0 26
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic alpha-galactoside-binding protein;
PDBTitle: structure of the periplasmic binding protein melb (atu4661) in complex2 with melibiose from agrobacterium fabrum c58
29d1igqa_
not modelled 5.8 19
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Transcriptional repressor protein KorB
30c4mjsQ_
not modelled 5.8 11
PDB header:transferase/protein binding
Chain: Q: PDB Molecule:protein kinase c zeta type;
PDBTitle: crystal structure of a pb1 complex
31d1erna2
not modelled 5.5 15
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
32d2hqxa1
not modelled 5.4 12
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:Tudor domain
33c2hqxB_
not modelled 5.4 12
PDB header:transcription
Chain: B: PDB Molecule:p100 co-activator tudor domain;
PDBTitle: crystal structure of human p100 tudor domain conserved2 region
34d1zlqa1
not modelled 5.4 22
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
35c4hzuS_
not modelled 5.4 17
PDB header:hydrolase, transport protein
Chain: S: PDB Molecule:predicted membrane protein;
PDBTitle: structure of a bacterial energy-coupling factor transporter
36d2z15a1
not modelled 5.2 35
Fold:BTG domain-like
Superfamily:BTG domain-like
Family:BTG domain-like
37c3m8uA_
not modelled 5.2 17
PDB header:transport protein
Chain: A: PDB Molecule:heme-binding protein a;
PDBTitle: crystal structure of glutathione-binding protein a (gbpa) from2 haemophilus parasuis sh0165 in complex with glutathione disulfide3 (gssg)
38c3zk0A_
not modelled 5.1 18
PDB header:chaperone
Chain: A: PDB Molecule:sco3965;
PDBTitle: the crystal structure of a cu(i) metallochaperone from2 streptomyces lividans in its apo form
39c5o60Y_
not modelled 5.0 11
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l28;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis

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