Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1274_(lprB)_1424203_1424760
DateWed Jul 31 22:05:36 BST 2019
Unique Job ID14ebf3300f73e5e5
SequenceVRRKVRRLTL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.217 Y:23.655 Z:48.395
Model (left) based on template c2re3A_
Top template information
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution
Confidence and coverage
Confidence: 47.6% Coverage: 8%
15 residues ( 8% of your sequence) have been modelled with 47.6% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2re3A_
47.6 33
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution
2d2b5ic2
43.4 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
3c2ra9A_
34.6 20
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein duf1285;
PDBTitle: crystal structure of a duf1285 family protein (sbal_2486) from2 shewanella baltica os155 at 1.40 a resolution
4c2h0pA_
34.4 37
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein;
PDBTitle: nmr structure of the dengue-4 virus envelope protein domain2 iii
5c2jqmA_
31.1 32
PDB header:transferase
Chain: A: PDB Molecule:envelope protein e;
PDBTitle: yellow fever envelope protein domain iii nmr structure2 (s288-k398)
6d1cc5a_
21.8 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
7d1e2rb1
21.2 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
8c2lqvA_
20.0 21
PDB header:protein transport
Chain: A: PDB Molecule:protein yebf;
PDBTitle: yebf
9c3d8mA_
18.6 18
PDB header:virus/viral protein
Chain: A: PDB Molecule:baseplate protein, receptor binding protein;
PDBTitle: crystal structure of a chimeric receptor binding protein from2 lactococcal phages subspecies tp901-1 and p2
10d1qksa1
17.7 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
11c4dixA_
16.9 21
PDB header:protein binding
Chain: A: PDB Molecule:plectin-related protein;
PDBTitle: crystal structure of the ig-ph domain of actin-binding protein scab1
12c6iczX_
16.2 4
PDB header:splicing
Chain: X: PDB Molecule:prkr-interacting protein 1;
PDBTitle: cryo-em structure of a human post-catalytic spliceosome (p complex) at2 3.0 angstrom
13c4j20B_
16.1 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c-555;
PDBTitle: x-ray structure of the cytochrome c-554 from chlorobaculum tepidum
14d1kx7a_
14.4 17
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
15d1s6na_
13.5 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Class II viral fusion proteins C-terminal domain
16c4e6kG_
11.2 24
PDB header:metal binding protein/electron transport
Chain: G: PDB Molecule:bacterioferritin-associated ferredoxin;
PDBTitle: 2.0 a resolution structure of pseudomonas aeruginosa bacterioferritin2 (bfrb) in complex with bacterioferritin associated ferredoxin (bfd)
17c2ch8A_
11.1 33
PDB header:viral protein
Chain: A: PDB Molecule:33 kda early protein;
PDBTitle: structure of the epstein-barr virus oncogene barf1
18d2htja1
11.0 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FaeA-like
19c1q1hA_
10.8 7
PDB header:transcription
Chain: A: PDB Molecule:transcription factor e;
PDBTitle: an extended winged helix domain in general transcription2 factor e/iie alpha
20d1q1ha_
10.8 7
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcription factor E/IIe-alpha, N-terminal domain
21c3l12A_
not modelled 10.7 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative glycerophosphoryl diester phosphodiesterase;
PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (yp_165505.1) from silicibacter pomeroyi dss-3 at3 1.60 a resolution
22d2jell2
not modelled 10.7 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
23c3b5hB_
not modelled 10.3 16
PDB header:cell invasion
Chain: B: PDB Molecule:cervical emmprin;
PDBTitle: crystal structure of the extracellular portion of hab18g/cd147
24c4e6kI_
not modelled 10.2 31
PDB header:metal binding protein/electron transport
Chain: I: PDB Molecule:bacterioferritin-associated ferredoxin;
PDBTitle: 2.0 a resolution structure of pseudomonas aeruginosa bacterioferritin2 (bfrb) in complex with bacterioferritin associated ferredoxin (bfd)
25c2x3hA_
not modelled 10.0 21
PDB header:lyase
Chain: A: PDB Molecule:k5 lyase;
PDBTitle: coliphage k5a lyase
26d2i06a1
not modelled 10.0 21
Fold:Replication terminator protein (Tus)
Superfamily:Replication terminator protein (Tus)
Family:Replication terminator protein (Tus)
27d1h9xa1
not modelled 9.9 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
28d1eapb2
not modelled 9.6 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
29c1x9qA_
not modelled 9.6 17
PDB header:immune system
Chain: A: PDB Molecule:4m5.3 anti-fluorescein single chain antibody fragment;
PDBTitle: 4m5.3 anti-fluorescein single chain antibody fragment (scfv)
30d1sm3h2
not modelled 9.5 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
31d2ck0l2
not modelled 9.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
32c4oi6A_
not modelled 9.4 9
PDB header:metal binding protein
Chain: A: PDB Molecule:nickel responsive protein;
PDBTitle: crystal structure analysis of nickel-bound form sco4226 from2 streptomyces coelicolor a3(2)
33d1igtb4
not modelled 9.3 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
34c4jvwD_
not modelled 9.2 17
PDB header:protein binding
Chain: D: PDB Molecule:ig mu chain c region secreted form;
PDBTitle: igm c4-domain from mouse
35c2xksA_
not modelled 9.1 0
PDB header:immune system
Chain: A: PDB Molecule:beta-2-microglobulin;
PDBTitle: prion-like conversion during amyloid formation at atomic resolution
36c5npiB_
not modelled 9.1 25
PDB header:viral protein
Chain: B: PDB Molecule:single chain variable fragment of the non-neutralizing
PDBTitle: structure of the hepatitis c virus strain j4 glycoprotein e2 antigenic2 region 532-540 bound to the single chain variable fragment of the3 non-neutralizing antibody dao5
37c2vifA_
not modelled 9.1 22
PDB header:signaling protein
Chain: A: PDB Molecule:suppressor of cytokine signalling 6;
PDBTitle: crystal structure of socs6 sh2 domain in complex with a c-kit2 phosphopeptide
38c2druA_
not modelled 9.0 23
PDB header:immune system
Chain: A: PDB Molecule:chimera of cd48 antigen and t-cell surface antigen cd2;
PDBTitle: crystal structure and binding properties of the cd2 and cd244 (2b4)2 binding protein, cd48
39c1cczA_
not modelled 9.0 23
PDB header:glycoprotein
Chain: A: PDB Molecule:protein (cd58);
PDBTitle: crystal structure of the cd2-binding domain of cd58 (lymphocyte2 function-associated antigen 3) at 1.8-a resolution
40c2xglB_
not modelled 8.8 25
PDB header:antibiotic
Chain: B: PDB Molecule:colicin-m immunity protein;
PDBTitle: the x-ray structure of the escherichia coli colicin m immunity protein2 demonstrates the presence of a disulphide bridge, which is3 functionally essential
41d1deeb2
not modelled 8.6 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
42c4o2hB_
not modelled 8.6 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein bcam1869;
PDBTitle: crystal structure of bcam1869 protein (rsam homolog) from burkholderia2 cenocepacia
43d1uwel2
not modelled 8.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
44c2jpwA_
not modelled 8.3 32
PDB header:contractile protein
Chain: A: PDB Molecule:troponin i, cardiac muscle;
PDBTitle: solution structure of the bisphosphorylated cardiac2 specific n-extension of cardiac troponin i
45c2x89F_
not modelled 7.9 0
PDB header:immune system
Chain: F: PDB Molecule:beta-2-microglobulin;
PDBTitle: structure of the beta2_microglobulin involved in amyloidogenesis
46d1bfoa2
not modelled 7.9 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
47d1igyb4
not modelled 7.8 7
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
48c5aonB_
not modelled 7.6 27
PDB header:signaling protein
Chain: B: PDB Molecule:peroxin 14;
PDBTitle: crystal structure of the conserved n-terminal domain of2 pex14 from trypanosoma brucei
49d1mjul2
not modelled 7.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
50d1bfob2
not modelled 7.4 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
51c2pxgA_
not modelled 7.4 21
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein;
PDBTitle: nmr solution structure of omla
52c4qycA_
not modelled 7.4 32
PDB header:cell adhesion
Chain: A: PDB Molecule:carcinoembryonic antigen-related cell adhesion molecule 1,
PDBTitle: crystal structure of the chimeric protein human ceacam1: human tim32 membrane distal amino terminal (n)-domain
53d2ouwa1
not modelled 7.2 20
Fold:AhpD-like
Superfamily:AhpD-like
Family:TTHA0727-like
54c3alxB_
not modelled 7.2 22
PDB header:viral protein/membrane protein
Chain: B: PDB Molecule:hemagglutinin,linker,cdw150;
PDBTitle: crystal structure of the measles virus hemagglutinin bound to its2 cellular receptor slam (mv-h(l482r)-slam(n102h/r108y) fusion)
55c2li5B_
not modelled 7.1 38
PDB header:protein transport
Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme atg7;
PDBTitle: nmr structure of atg8-atg7c30 complex
56d1mhca1
not modelled 7.0 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
57c3fomB_
not modelled 7.0 17
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide iqqsierl
58c3fonD_
not modelled 7.0 17
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of the class i mhc molecule h-2kwm7 with a single2 self peptide vndifeai
59d1c5cl2
not modelled 7.0 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
60d2i8ga1
not modelled 6.9 19
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:DIP2269-like
61c3rwgB_
not modelled 6.9 0
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: rhesus macaque mhc class i molecule mamu-b*17-mw9
62d1q72l2
not modelled 6.8 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
63c2jtdA_
not modelled 6.8 14
PDB header:cell adhesion
Chain: A: PDB Molecule:myomesin-1;
PDBTitle: skelemin immunoglobulin c2 like domain 4
64d1lk3l2
not modelled 6.7 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
65d1s9va1
not modelled 6.7 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
66d1pg7w2
not modelled 6.7 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
67d1nira1
not modelled 6.6 22
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:N-terminal (heme c) domain of cytochrome cd1-nitrite reductase
68d2fb4l2
not modelled 6.6 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
69d1hdmb1
not modelled 6.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
70d1mjuh2
not modelled 6.5 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
71d1pskh2
not modelled 6.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
72d1rzfl2
not modelled 6.4 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
73c2mbhB_
not modelled 6.4 40
PDB header:transcription
Chain: B: PDB Molecule:krueppel-like factor 1;
PDBTitle: nmr structure of eklf(22-40)/ubiquitin complex
74c3shsA_
not modelled 6.4 18
PDB header:viral protein
Chain: A: PDB Molecule:hoc head outer capsid protein;
PDBTitle: three n-terminal domains of the bacteriophage rb49 highly immunogenic2 outer capsid protein (hoc)
75c4jgjB_
not modelled 6.3 43
PDB header:immune system
Chain: B: PDB Molecule:carcinoembryonic antigen-related cell adhesion molecule 15;
PDBTitle: crystal structure of the ig-like d1 domain from mouse2 carcinoembryogenic antigen-related cell adhesion molecule 153 (ceacam15) [psi-nysgrc-005691]
76d1zs8a1
not modelled 6.3 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
77d1l6xa2
not modelled 6.2 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
78d1mo9a3
not modelled 6.2 15
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
79d1osph2
not modelled 6.2 25
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
80d1lk2a1
not modelled 6.1 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
81c5l87A_
not modelled 6.1 27
PDB header:membrane protein
Chain: A: PDB Molecule:peroxin 14;
PDBTitle: targeting the pex14-pex5 interaction by small molecules provides novel2 therapeutic routes to treat trypanosomiases.
82c1cqkB_
not modelled 6.1 8
PDB header:immune system
Chain: B: PDB Molecule:ch3 domain of mak33 antibody;
PDBTitle: crystal structure of the ch3 domain from the mak33 antibody
83c1cqkA_
not modelled 6.1 8
PDB header:immune system
Chain: A: PDB Molecule:ch3 domain of mak33 antibody;
PDBTitle: crystal structure of the ch3 domain from the mak33 antibody
84d1cqka_
not modelled 6.1 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
85c4iiqC_
not modelled 6.1 25
PDB header:immune system
Chain: C: PDB Molecule:beta-2-microglobulin, mhc class i-related protein;
PDBTitle: crystal structure of a human mait tcr in complex with bovine mr1
86c2mqsD_
not modelled 6.0 31
PDB header:hydrolase
Chain: D: PDB Molecule:thp_t_chain;
PDBTitle: transient collagen triple helix binding to a key metalloproteinase in2 invasion and development: spin labels to structure
87d1zxqa1
not modelled 5.9 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C2 set domains
88d1nfde2
not modelled 5.9 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
89d2gysa1
not modelled 5.9 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
90c2z0lA_
not modelled 5.9 15
PDB header:replication
Chain: A: PDB Molecule:early antigen protein d;
PDBTitle: crystal structure of ebv-dna polymerase accessory protein2 bmrf1
91c2zswD_
not modelled 5.8 17
PDB header:immune system
Chain: D: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598
92c2zolB_
not modelled 5.8 17
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of h-2db in complex with the w513s variant of jhmv2 epitope s510
93c2zswB_
not modelled 5.8 17
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598
94c1zt1B_
not modelled 5.8 17
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of class i mhc h-2kk in complex with an2 octapeptide
95c3pqyQ_
not modelled 5.8 17
PDB header:immune system
Chain: Q: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224
96c3pqyL_
not modelled 5.8 17
PDB header:immune system
Chain: L: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of 6218 tcr in complex with the h2db-pa224
97c2zswH_
not modelled 5.8 17
PDB header:immune system
Chain: H: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598
98c1kpvB_
not modelled 5.8 17
PDB header:immune system
Chain: B: PDB Molecule:beta-2-microglobulin;
PDBTitle: high resolution crystal structure of the mhc class i complex h-2 2kb/sev9
99c2zswF_
not modelled 5.8 17
PDB header:immune system
Chain: F: PDB Molecule:beta-2-microglobulin;
PDBTitle: crystal structure of h-2kb in complex with the q600y variant of jhmv2 epitope s598

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