Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1282c_(oppC)_1435274_1436149
DateWed Jul 31 22:05:37 BST 2019
Unique Job ID77e3b86447d25203
SequenceMTEFASRRTL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.219 Y:48.313 Z:76.723
Model (left) based on template c4ymuC_
Top template information
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
Confidence and coverage
Confidence: 99.9% Coverage: 69%
202 residues ( 69% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
283 residues ( 97%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ymuC_



99.9 7
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
2c4tqvI_



99.9 10
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
3c3fh6F_



99.9 10
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
4c2onkC_



99.9 15
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
5d2onkc1



99.9 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
6d3dhwa1



99.9 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7d3d31c1



99.9 17
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
8c3d31D_



99.9 17
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
9d2r6gf2



99.9 13
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
10c4tqvJ_



99.9 11
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
11c2r6gF_



99.9 13
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
12d2r6gg1



99.9 12
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



96.3 18
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14c2jwaA_



24.6 9
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
15c2ks1A_



24.6 9
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
16c2nd4A_



21.6 25
PDB header:hydrolase receptor
Chain: A: PDB Molecule:amylase-binding protein abpa;
PDBTitle: a distinct sortase srtb anchors and processes a streptococcal adhesin2 abpa with a novel structural property
17c6o7xa_



16.3 10
PDB header:membrane protein
Chain: A: PDB Molecule:vacuolar atp synthase catalytic subunit a;
PDBTitle: saccharomyces cerevisiae v-atpase stv1-v1vo state 3
18c5gasN_



13.5 16
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
19c3k07A_



10.9 15
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
20c6b8hb_



10.7 10
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit alpha, mitochondrial;
PDBTitle: mosaic model of yeast mitochondrial atp synthase monomer
21c2b9sB_



not modelled 10.4 23
PDB header:isomerase/dna
Chain: B: PDB Molecule:dna topoisomerase i-like protein;
PDBTitle: crystal structure of heterodimeric l. donovani topoisomerase i-2 vanadate-dna complex
22c1umqA_



not modelled 10.1 13
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
23d1umqa_



not modelled 10.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
24c2lonA_



not modelled 9.8 9
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1b;
PDBTitle: backbone structure of human membrane protein higd1b
25c2m8gX_



not modelled 9.3 15
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
26c4l5eA_



not modelled 8.7 9
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
27c2lomA_



not modelled 7.5 6
PDB header:membrane protein
Chain: A: PDB Molecule:hig1 domain family member 1a;
PDBTitle: backbone structure of human membrane protein higd1a
28d1ntca_



not modelled 7.2 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
29c1g2hA_



not modelled 7.2 29
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
30d1g2ha_



not modelled 7.2 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
31c6g3bA_



not modelled 6.6 22
PDB header:hydrolase
Chain: A: PDB Molecule:type ii site-specific deoxyribonuclease;
PDBTitle: avaii restriction endonuclease in complex with an rna/dna hybrid
32d1fipa_



not modelled 6.4 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
33c5xu1M_



not modelled 6.3 14
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
34c1wz4A_



not modelled 5.5 63
PDB header:gene regulation
Chain: A: PDB Molecule:major surface antigen;
PDBTitle: solution conformation of adr subtype hbv pre-s2 epitope

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below