Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1283c_(oppB)_1436146_1437123
DateWed Jul 31 22:05:37 BST 2019
Unique Job IDfc4e564503ad43bc
SequenceMTRYLARRLL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.253 Y:53.466 Z:79.260
Model (left) based on template c4ymuC_
Top template information
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
Confidence and coverage
Confidence: 99.9% Coverage: 66%
214 residues ( 66% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
320 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ymuC_



99.9 14
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
2d3dhwa1



99.9 21
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
3c3d31D_



99.8 13
PDB header:transport protein
Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease protein;
PDBTitle: modbc from methanosarcina acetivorans
4d3d31c1



99.8 13
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
5c2onkC_



99.8 9
PDB header:membrane protein
Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease
PDBTitle: abc transporter modbc in complex with its binding protein2 moda
6d2onkc1



99.8 9
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
7c4tqvI_



99.8 14
PDB header:transport protein
Chain: I: PDB Molecule:algm1;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
8d2r6gf2



99.6 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
9c2r6gF_



99.5 12
PDB header:hydrolase/transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: the crystal structure of the e. coli maltose transporter
10c3fh6F_



99.5 13
PDB header:transport protein
Chain: F: PDB Molecule:maltose transport system permease protein malf;
PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli
11c4tqvJ_



99.2 17
PDB header:transport protein
Chain: J: PDB Molecule:algm2;
PDBTitle: crystal structure of a bacterial abc transporter involved in the2 import of the acidic polysaccharide alginate
12d2r6gg1



99.0 15
Fold:MetI-like
Superfamily:MetI-like
Family:MetI-like
13c5kbuA_



94.3 16
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor 2,voltage-dependent calcium channel
PDBTitle: cryo-em structure of glua2-2xstz complex at 7.8 angstrom resolution
14c2nd4A_



59.8 43
PDB header:hydrolase receptor
Chain: A: PDB Molecule:amylase-binding protein abpa;
PDBTitle: a distinct sortase srtb anchors and processes a streptococcal adhesin2 abpa with a novel structural property
15c5xu1M_



45.1 14
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
16c5nikK_



32.4 16
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
17c5lj7B_



31.6 16
PDB header:transport protein
Chain: B: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of aggregatibacter actinomycetemcomitans macb bound to atp2 (p21)
18c1wz4A_



22.6 78
PDB header:gene regulation
Chain: A: PDB Molecule:major surface antigen;
PDBTitle: solution conformation of adr subtype hbv pre-s2 epitope
19c2yevC_



19.6 33
PDB header:electron transport
Chain: C: PDB Molecule:caa3-type cytochrome oxidase subunit iv;
PDBTitle: structure of caa3-type cytochrome oxidase
20c5l75F_



16.9 20
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
21c2m8gX_



not modelled 14.8 26
PDB header:transcription
Chain: X: PDB Molecule:transcriptional regulator;
PDBTitle: structure, function, and tethering of dna-binding domains in 542 transcriptional activators
22d1g2ha_



not modelled 14.8 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
23c1g2hA_



not modelled 14.8 19
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
24c2ka2B_



not modelled 13.8 12
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
25c2ka1A_



not modelled 13.8 12
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
26c2ka1B_



not modelled 13.8 12
PDB header:membrane protein
Chain: B: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles
27c2ka2A_



not modelled 13.8 12
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting
PDBTitle: solution nmr structure of bnip3 transmembrane peptide dimer2 in detergent micelles with his173-ser172 intermonomer3 hydrogen bond restraints
28c6f2dI_



not modelled 12.9 18
PDB header:protein transport
Chain: I: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
29c6f2dJ_



not modelled 12.9 18
PDB header:protein transport
Chain: J: PDB Molecule:flagellar biosynthetic protein fliq;
PDBTitle: a flipqr complex forms the core of the salmonella type iii secretion2 system export apparatus.
30c6r6bI_



not modelled 12.5 18
PDB header:protein transport
Chain: I: PDB Molecule:surface presentation of antigens protein spaq;
PDBTitle: structure of the core shigella flexneri type iii secretion system2 export gate complex sctrst (spa24/spa9/spa29).
31c5x3tA_



not modelled 12.2 23
PDB header:antitoxin/toxin
Chain: A: PDB Molecule:antitoxin vapb26;
PDBTitle: vapbc from mycobacterium tuberculosis
32c4g1uB_



not modelled 12.0 18
PDB header:transport protein/hydrolase
Chain: B: PDB Molecule:hemin transport system permease protein hmuu;
PDBTitle: x-ray structure of the bacterial heme transporter hmuuv from yersinia2 pestis
33d1umqa_



not modelled 11.9 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
34c1umqA_



not modelled 11.9 19
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
35c2j5dA_



not modelled 10.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:bcl2/adenovirus e1b 19 kda protein-interacting protein 3;
PDBTitle: nmr structure of bnip3 transmembrane domain in lipid bicelles
36d2auwa1



not modelled 9.4 29
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
37d1ntca_



not modelled 9.3 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
38c5b57B_



not modelled 8.6 15
PDB header:metal transport
Chain: B: PDB Molecule:putative hemin abc transport system, membrane protein;
PDBTitle: inward-facing conformation of abc heme importer bhuuv from2 burkholderia cenocepacia
39c2b9sB_



not modelled 8.1 36
PDB header:isomerase/dna
Chain: B: PDB Molecule:dna topoisomerase i-like protein;
PDBTitle: crystal structure of heterodimeric l. donovani topoisomerase i-2 vanadate-dna complex
40d1a9xa1



not modelled 7.8 16
Fold:Carbamoyl phosphate synthetase, large subunit connection domain
Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain
Family:Carbamoyl phosphate synthetase, large subunit connection domain
41c4l5eA_



not modelled 7.7 9
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
42c1y66D_



not modelled 7.4 21
PDB header:de novo protein
Chain: D: PDB Molecule:engrailed homeodomain;
PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant
43c5ws4A_



not modelled 6.6 17
PDB header:membrane protein
Chain: A: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: crystal structure of tripartite-type abc transporter macb from2 acinetobacter baumannii
44c1ciiA_



not modelled 6.4 20
PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
45c2nq2A_



not modelled 6.3 11
PDB header:metal transport
Chain: A: PDB Molecule:hypothetical abc transporter permease protein
PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
46d1etob_



not modelled 6.2 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
47d1zq1c1



not modelled 6.2 23
Fold:GatB/YqeY motif
Superfamily:GatB/YqeY motif
Family:GatB/GatE C-terminal domain-like
48c6ac5A_



not modelled 6.1 24
PDB header:signaling protein
Chain: A: PDB Molecule:receptor-interacting serine/threonine-protein kinase 1;
PDBTitle: crystal structure of ripk1 death domain glcnacylated by epec effector2 nleb
49d1fipa_



not modelled 6.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
50c4ndlC_



not modelled 6.0 18
PDB header:de novo protein
Chain: C: PDB Molecule:enh-c2b, computational designed homodimer;
PDBTitle: computational design and experimental verification of a symmetric2 homodimer
51c5m7nA_



not modelled 5.8 25
PDB header:signaling protein
Chain: A: PDB Molecule:nitrogen assimilation regulatory protein;
PDBTitle: crystal structure of ntrx from brucella abortus in complex with atp2 processed with the crystaldirect automated mounting and cryo-cooling3 technology
52c2cw1A_



not modelled 5.8 30
PDB header:de novo protein
Chain: A: PDB Molecule:sn4m;
PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein
53d3orca_



not modelled 5.5 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
54c5l75G_



not modelled 5.4 11
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
55c3td7A_



not modelled 5.4 31
PDB header:oxidoreductase
Chain: A: PDB Molecule:fad-linked sulfhydryl oxidase r596;
PDBTitle: crysal structure of the mimivirus sulfhydryl oxidase r596
56c2d7dB_



not modelled 5.3 19
PDB header:hydrolase/dna
Chain: B: PDB Molecule:40-mer from uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
57d1gt1a_



not modelled 5.2 18
Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
58c2knaA_



not modelled 5.1 11
PDB header:apoptosis
Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 4;
PDBTitle: solution structure of uba domain of xiap
59c3oq9C_



not modelled 5.1 13
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: structure of the fas/fadd death domain assembly

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below