Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1289_(-)_1442773_1443405
DateWed Jul 31 22:05:38 BST 2019
Unique Job ID6a66dc5cd22b8753
SequenceMCVSVGESVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.273 Y:48.064 Z:35.269
Model (left) based on template c3oa8B_
Top template information
PDB header:heme-binding protein/heme-binding protei
Chain: B: PDB Molecule:soxx;
PDBTitle: diheme soxax
Confidence and coverage
Confidence: 29.3% Coverage: 37%
77 residues ( 37% of your sequence) have been modelled with 29.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3oa8B_
29.3 18
PDB header:heme-binding protein/heme-binding protei
Chain: B: PDB Molecule:soxx;
PDBTitle: diheme soxax
2c2du3A_
24.3 13
PDB header:ligase/rna
Chain: A: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys and o-phosphoserine
3c4tvxT_
20.2 38
PDB header:
PDB COMPND:
4c4n77A_
19.3 54
PDB header:rna binding protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of cas protein
5c2du7C_
17.5 13
PDB header:ligase
Chain: C: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of methanococcus jannacshii o-phosphoseryl-trna2 synthetase
6c2mn2A_
17.4 9
PDB header:antitoxin
Chain: A: PDB Molecule:ymob;
PDBTitle: 3d structure of ymob, a modulator of biofilm formation
7c4iykA_
16.2 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative carbohydrate binding protein2 (bacuni_04699) from bacteroides uniformis atcc 8492 at 2.00 a3 resolution
8d2vo1a1
16.0 28
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
9c2du4B_
15.3 13
PDB header:ligase/rna
Chain: B: PDB Molecule:o-phosphoseryl-trna synthetase;
PDBTitle: crystal structure of archaeoglobus fulgidus o-phosphoseryl-2 trna synthetase complexed with trnacys
10c5u07N_
15.1 13
PDB header:immune system
Chain: N: PDB Molecule:crispr-associated protein, cas5e family;
PDBTitle: crispr rna-guided surveillance complex
11c3hn5B_
14.7 24
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative exported protein bf0290;
PDBTitle: crystal structure of bf0290 (yp_210027.1) from bacteroides fragilis2 nctc 9343 at 1.70 a resolution
12c2y3nB_
12.0 35
PDB header:structrual protein/hydrolase
Chain: B: PDB Molecule:cellulosomal family-48 processive glycoside hydrolase;
PDBTitle: type ii cohesin-dockerin domain from bacteroides cellolosolvens
13d2gnra1
11.9 16
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:SSO2064-like
14c6dk9I_
11.8 16
PDB header:lyase
Chain: I: PDB Molecule:dna damage-inducible protein;
PDBTitle: yeast ddi2 cyanamide hydratase
15c4yokA_
11.3 21
PDB header:unknown function
Chain: A: PDB Molecule:putative flagellar protein flis;
PDBTitle: crystal structure of a duf3823 family protein (parmer_04126) from2 parabacteroides merdae atcc 43184 at 1.80 a resolution
16c6qbyA_
11.2 15
PDB header:cytosolic protein
Chain: A: PDB Molecule:tubulinyl-tyr carboxypeptidase 2;
PDBTitle: crystal structure of vash 2 in complex with svbp
17c2llhA_
11.2 38
PDB header:dna binding protein, chaperone
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: nmr structure of npm1_c70
18c2v1sD_
10.7 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:mitochondrial import receptor subunit tom20 homolog;
PDBTitle: crystal structure of rat tom20-aldh presequence complex
19c2vxdA_
10.3 38
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: the structure of the c-terminal domain of nucleophosmin
20c4dh2B_
9.5 22
PDB header:cell adhesion/protein binding
Chain: B: PDB Molecule:dockerin type 1;
PDBTitle: crystal structure of coh-olpc(cthe_0452)-doc435(cthe_0435) complex: a2 novel type i cohesin-dockerin complex from clostridium thermocellum3 attc 27405
21d1om2a_
not modelled 8.9 14
Fold:Open three-helical up-and-down bundle
Superfamily:Mitochondrial import receptor subunit Tom20
Family:Mitochondrial import receptor subunit Tom20
22c6j4uA_
not modelled 7.9 14
PDB header:hydrolase
Chain: A: PDB Molecule:tubulinyl-tyr carboxypeptidase 1;
PDBTitle: structural basis of tubulin detyrosination by vasohibins-svbp enzyme2 complex and functional implications
23c4fxtB_
not modelled 7.8 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf3823 family protein (bacova_02663) from2 bacteroides ovatus atcc 8483 at 2.77 a resolution
24c2x3mA_
not modelled 7.5 80
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein orf239;
PDBTitle: crystal structure of hypothetical protein orf239 from pyrobaculum2 spherical virus
25c2dnqA_
not modelled 7.5 5
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-binding protein 4b;
PDBTitle: solution structure of rna binding domain 1 in rna-binding2 protein 30
26c2ab9A_
not modelled 7.3 57
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:pro-sfti-1;
PDBTitle: discovery, structural determination and processing of the2 precursor protein that produces the cyclic trypsin3 inhibitor sfti-1
27d1cf7a_
not modelled 7.2 55
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Cell cycle transcription factor e2f-dp
28d3bbda1
not modelled 7.2 21
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:EMG1/NEP1-like
29c5faiA_
not modelled 6.8 19
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase nep1;
PDBTitle: emg1 n1-specific pseudouridine methyltransferase
30d1xrxa1
not modelled 6.5 30
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:SeqA N-terminal domain-like
31c1xrxD_
not modelled 6.5 30
PDB header:replication inhibitor
Chain: D: PDB Molecule:seqa protein;
PDBTitle: crystal structure of a dna-binding protein
32d2dkya1
not modelled 6.2 26
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
33c4eiuA_
not modelled 6.1 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized hypothetical protein;
PDBTitle: crystal structure of a duf3823 family protein (bacuni_03093) from2 bacteroides uniformis atcc 8492 at 1.90 a resolution
34c2jmbA_
not modelled 6.0 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein atu4866;
PDBTitle: solution structure of the protein atu4866 from agrobacterium2 tumefaciens
35d2h80a1
not modelled 6.0 30
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Variant SAM domain
36d2cpta1
not modelled 5.9 15
Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
37c4g6vE_
not modelled 5.9 19
PDB header:toxin
Chain: E: PDB Molecule:adhesin/hemolysin;
PDBTitle: cdia-ct/cdii toxin and immunity complex from burkholderia pseudomallei
38c3j0xI_
not modelled 5.8 22
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s6;
PDBTitle: structural characterization of mrna-trna translocation intermediates2 (30s ribosome of class 4b of the six classes)
39c4n7zB_
not modelled 5.5 31
PDB header:cell cycle
Chain: B: PDB Molecule:centrosomal protein of 192 kda;
PDBTitle: crystal structure of human plk4 cryptic polo box (cpb) in complex with2 a cep192 n-terminal fragment
40c5m2sB_
not modelled 5.5 30
PDB header:protein binding
Chain: B: PDB Molecule:doc8: type i dockerin repeat domain from family 9 glycoside
PDBTitle: r. flavefaciens' third scab cohesin in complex with a group 1 dockerin
41d1jb0e_
not modelled 5.5 45
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Photosystem I accessory protein E (PsaE)
42d2j5aa1
not modelled 5.5 22
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
43d1qjha_
not modelled 5.3 9
Fold:Ferredoxin-like
Superfamily:Ribosomal protein S6
Family:Ribosomal protein S6
44c5lxvB_
not modelled 5.3 34
PDB header:protein binding
Chain: B: PDB Molecule:carbohydrate-binding protein wp_009985128;
PDBTitle: crystal structure of ruminococcus flavefaciens scaffoldin c cohesin in2 complex with a dockerin from an uncharacterized cbm-containing3 protein
45c2cbjA_
not modelled 5.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase;
PDBTitle: structure of the clostridium perfringens nagj family 84 glycoside2 hydrolase, a homologue of human o-glcnacase in complex with pugnac
46d2jq9a1
not modelled 5.2 19
Fold:Spectrin repeat-like
Superfamily:MIT domain
Family:MIT domain
47c4uyqB_
not modelled 5.2 16
PDB header:cell adhesion/protein binding
Chain: B: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: high resolution structure of the third cohesin scac in complex with2 the scab dockerin with a mutation in the c-terminal helix (in to si)3 from acetivibrio cellulolyticus displaying a type i interaction.
48c2k58B_
not modelled 5.1 26
PDB header:transport protein
Chain: B: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: nmr structures of the first transmembrane domain of the2 neuronal acetylcholine receptor beta 2 subunit

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