Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1290A_(-)_1445064_1445378
DateWed Jul 31 22:05:38 BST 2019
Unique Job IDcf923f5b2a19c72a
SequenceVLALHGLSEG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.267 Y:39.207 Z:26.960
Model (left) based on template c6amgA_
Top template information
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cyt p460 of nitrosomonas sp. al212
Confidence and coverage
Confidence: 23.5% Coverage: 33%
34 residues ( 33% of your sequence) have been modelled with 23.5% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6amgA_



23.5 26
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cyt p460 of nitrosomonas sp. al212
2c3sc0A_



18.9 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein;
PDBTitle: crystal structure of mmachc (1-238), a human b12 processing enzyme,2 complexed with methylcobalamin
3c1kn7A_



11.8 78
PDB header:membrane protein
Chain: A: PDB Molecule:voltage-gated potassium channel protein kv1.4;
PDBTitle: solution structure of the tandem inactivation domain2 (residues 1-75) of potassium channel rck4 (kv1.4)
4c4blgB_



11.6 45
PDB header:viral protein
Chain: B: PDB Molecule:latency-associated nuclear antigen;
PDBTitle: crystal structure of mhv-68 latency-associated nuclear antigen (lana)2 c-terminal dna binding domain
5c4k2jB_



11.1 64
PDB header:dna binding protein, viral protein
Chain: B: PDB Molecule:kshv (hhv-8) latency-associated nuclear antigen (lana);
PDBTitle: decameric ring structure of kshv (hhv-8) latency-associated nuclear2 antigen (lana) dna binding domain
6c3cvoA_



10.7 31
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase-like protein of unknown function;
PDBTitle: crystal structure of a methyltransferase-like protein (spo2022) from2 silicibacter pomeroyi dss-3 at 1.80 a resolution
7c6db1A_



10.3 33
PDB header:transferase
Chain: A: PDB Molecule:putative methyl-accepting chemotaxis protein;
PDBTitle: 2.0 angstrom resolution crystal structure of n-terminal ligand-binding2 domain of putative methyl-accepting chemotaxis protein from3 salmonella enterica
8c4wl2F_



10.1 33
PDB header:hydrolase
Chain: F: PDB Molecule:putative exported choloylglycine hydrolase;
PDBTitle: structure of penicillin v acylase from pectobacterium atrosepticum
9c2rkqA_



10.0 19
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein-sd;
PDBTitle: crystal structure of drosophila peptidoglycan recognition2 protein sd (pgrp-sd)
10c2yuyA_



9.4 21
PDB header:signaling protein
Chain: A: PDB Molecule:rho gtpase activating protein 21;
PDBTitle: solution structure of pdz domain of rho gtpase activating2 protein 21
11c6hiuA_



9.1 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cytochrome p460 from methylococcus capsulatus (bath)
12c3oc3B_



7.7 54
PDB header:hydrolase/transcription
Chain: B: PDB Molecule:helicase mot1;
PDBTitle: crystal structure of the mot1 n-terminal domain in complex with tbp
13d16vpa_



7.6 55
Fold:Conserved core of transcriptional regulatory protein vp16
Superfamily:Conserved core of transcriptional regulatory protein vp16
Family:Conserved core of transcriptional regulatory protein vp16
14c4h7wA_



7.4 19
PDB header:unknown function
Chain: A: PDB Molecule:upf0406 protein c16orf57;
PDBTitle: crystal structure of human c16orf57
15c6gw6A_



7.3 60
PDB header:toxin
Chain: A: PDB Molecule:res toxin;
PDBTitle: structure of the pseudomonas putida res-xre toxin-antitoxin complex
16d2bopa_



7.1 33
Fold:Ferredoxin-like
Superfamily:Viral DNA-binding domain
Family:Viral DNA-binding domain
17d2ia9a1



6.9 20
Fold:SpoVG-like
Superfamily:SpoVG-like
Family:SpoVG-like
18c3somO_



6.7 35
PDB header:oxidoreductase
Chain: O: PDB Molecule:methylmalonic aciduria and homocystinuria type c protein;
PDBTitle: crystal structure of human mmachc
19c1i26A_



6.5 44
PDB header:toxin
Chain: A: PDB Molecule:ptu-1;
PDBTitle: solution structure of ptu-1, a toxin from the assassin bugs2 peirates turpis that blocks the voltage sensitive calcium3 channel n-type
20d1gpqa_



6.4 50
Fold:Inhibitor of vertebrate lysozyme, Ivy
Superfamily:Inhibitor of vertebrate lysozyme, Ivy
Family:Inhibitor of vertebrate lysozyme, Ivy
21d1nixa_



not modelled 6.3 55
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
22c6gftA_



not modelled 6.0 55
PDB header:toxin
Chain: A: PDB Molecule:cyriotoxin-1a;
PDBTitle: antinociceptive evaluation of cyriotoxin-1a, the first toxin purified2 from cyriopagopus schioedtei spider venom
23c4je3B_



not modelled 5.9 50
PDB header:cell cycle
Chain: B: PDB Molecule:central kinetochore subunit chl4;
PDBTitle: an iml3-chl4 heterodimer links the core centromere to factors required2 for accurate chromosome segregation
24c4xa6C_



not modelled 5.7 70
PDB header:motor protein
Chain: C: PDB Molecule:gp7-myh7(1777-1855)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 4 of myh7
25c4xa6B_



not modelled 5.6 70
PDB header:motor protein
Chain: B: PDB Molecule:gp7-myh7(1777-1855)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 4 of myh7
26c5j9hA_



not modelled 5.4 36
PDB header:viral protein
Chain: A: PDB Molecule:envelopment polyprotein;
PDBTitle: crystal structure of glycoprotein c from puumala virus in the post-2 fusion conformation (ph 8.0)
27c6fcxA_



not modelled 5.4 20
PDB header:oxidoreductase
Chain: A: PDB Molecule:methylenetetrahydrofolate reductase;
PDBTitle: structure of human 5,10-methylenetetrahydrofolate reductase (mthfr)
28c3nctC_



not modelled 5.4 25
PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
29c5zk4D_



not modelled 5.1 24
PDB header:transferase
Chain: D: PDB Molecule:disa protein;
PDBTitle: the structure of dszs acyltransferase with carrier protein
30c5m9eA_



not modelled 5.1 55
PDB header:cell cycle
Chain: A: PDB Molecule:microtubule integrity protein mal3;
PDBTitle: interactions between the mal3 eb1-like domain and dis1
31c2n3pA_



not modelled 5.1 63
PDB header:toxin
Chain: A: PDB Molecule:asteropsin_g;
PDBTitle: solution nmr structure of asteropsin g from marine sponge asteropus

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite