Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1298_(rpmE)_1455169_1455411
DateWed Jul 31 22:05:39 BST 2019
Unique Job ID597ef6f3fa5b45a8
SequenceMKSDIHPAYE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:59.968 Y:58.661 Z:38.509
Model (left) based on template c5zet2_
Top template information
PDB header:ribosome
Chain: 2: PDB Molecule:50s ribosomal protein l31;
PDBTitle: m. smegmatis p/p state 50s ribosomal subunit
Confidence and coverage
Confidence:100.0% Coverage: 82%
66 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5zet2_
100.0 82
PDB header:ribosome
Chain: 2: PDB Molecule:50s ribosomal protein l31;
PDBTitle: m. smegmatis p/p state 50s ribosomal subunit
2c2hgj3_
100.0 54
PDB header:ribosome
Chain: 3: PDB Molecule:50s ribosomal protein l31;
PDBTitle: crystal structure of the 70s thermus thermophilus ribosome showing how2 the 16s 3'-end mimicks mrna e and p codons. this entry 2hgj contains3 50s ribosomal subunit. the 30s ribosomal subunit can be found in pdb4 entry 2hgi.
3c2b664_
100.0 37
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf1,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400
4d1vs6z1
100.0 55
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
5c3bbo1_
100.0 33
PDB header:ribosome
Chain: 1: PDB Molecule:ribosomal protein l31;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
6c5o60g_
99.9 75
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
7d2j0141
99.9 59
Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L31p
8c2j034_
99.9 59
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: structure of the thermus thermophilus 70s ribosome2 complexed with mrna, trna and paromomycin (part 4 of 4).3 this file contains the 50s subunit from molecule ii.
9c6dzpg_
99.8 48
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l6;
PDBTitle: cryo-em structure of mycobacterium smegmatis c(minus) 50s ribosomal2 subunit
10c1vw4V_
97.8 18
PDB header:ribosome
Chain: V: PDB Molecule:54s ribosomal protein l36, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
11c3f1f4_
97.5 59
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: crystal structure of a translation termination complex formed with2 release factor rf2. this file contains the 50s subunit of one 70s3 ribosome. the entire crystal structure contains two 70s ribosomes as4 described in remark 400.
12c2wh44_
97.5 59
PDB header:ribosome
Chain: 4: PDB Molecule:50s ribosomal protein l31;
PDBTitle: insights into translational termination from the structure2 of rf2 bound to the ribosome
13c4qjty_
32.1 27
PDB header:ribosome
Chain: Y: PDB Molecule:
PDBTitle: crystal structure of elongation factor 4 (ef4/lepa) bound to the2 thermus thermophilus 70s ribosome, 30s subunit of the 70s ribosome
14c5ikkA_
28.8 12
PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase clr3;
PDBTitle: structure of the histone deacetylase clr3
15c2ketA_
26.1 46
PDB header:antibiotic
Chain: A: PDB Molecule:cathelicidin-6;
PDBTitle: solution structure of bmap-27
16c5xknF_
24.6 39
PDB header:transferase/signaling protein
Chain: F: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
17c5xknE_
24.6 39
PDB header:transferase/signaling protein
Chain: E: PDB Molecule:epidermal patterning factor-like protein 4;
PDBTitle: crystal structure of plant receptor erl2 in complexe with epfl4
18d1tqza1
24.5 16
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Necap1 N-terminal domain-like
19c4x2eA_
23.7 62
PDB header:transferase
Chain: A: PDB Molecule:fic family protein putative filamentation induced by camp
PDBTitle: clostridium difficile wild type fic protein
20c1v0eB_
23.0 27
PDB header:hydrolase
Chain: B: PDB Molecule:endo-alpha-sialidase;
PDBTitle: endosialidase of bacteriophage k1f
21c5ol5B_
not modelled 21.6 25
PDB header:splicing
Chain: B: PDB Molecule:dna polymerase iii subunit alpha,dna polymerase iii subunit
PDBTitle: crystal structure of an inactivated ssp siclopps intein with cfahpq2 extein
22d1iufa2
not modelled 21.4 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Centromere-binding
23d1x6ha1
not modelled 20.8 44
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
24c3cucB_
not modelled 19.4 62
PDB header:signaling protein
Chain: B: PDB Molecule:protein of unknown function with a fic domain;
PDBTitle: crystal structure of a fic domain containing signaling protein2 (bt_2513) from bacteroides thetaiotaomicron vpi-5482 at 2.71 a3 resolution
25c6eu1Q_
not modelled 19.0 83
PDB header:transcription
Chain: Q: PDB Molecule:dna-directed rna polymerase iii subunit rpc7;
PDBTitle: rna polymerase iii - open dna complex (oc-pol3)
26c3cngC_
not modelled 18.7 26
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
27c3pr6A_
not modelled 18.6 11
PDB header:transport protein
Chain: A: PDB Molecule:trapp-associated protein tca17;
PDBTitle: crystal structure analysis of yeast trapp associate protein tca17
28c2keqA_
not modelled 18.1 25
PDB header:splicing
Chain: A: PDB Molecule:dna polymerase iii alpha subunit, nucleic acid
PDBTitle: solution structure of dnae intein from nostoc punctiforme
29c3ltiA_
not modelled 17.1 24
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta;
PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
30c1iufA_
not modelled 16.1 29
PDB header:dna binding protein
Chain: A: PDB Molecule:centromere abp1 protein;
PDBTitle: low resolution solution structure of the two dna-binding2 domains in schizosaccharomyces pombe abp1 protein
31c1q69B_
not modelled 15.9 50
PDB header:membrane protein/transferase
Chain: B: PDB Molecule:proto-oncogene tyrosine-protein kinase lck;
PDBTitle: solution structure of t-cell surface glycoprotein cd8 alpha2 chain and proto-oncogene tyrosine-protein kinase lck3 fragments
32c4u0zH_
not modelled 14.2 54
PDB header:transferase
Chain: H: PDB Molecule:adenosine monophosphate-protein transferase ficd;
PDBTitle: eukaryotic fic domain containing protein with bound apcpp
33c1zd7B_
not modelled 14.2 25
PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii alpha subunit;
PDBTitle: 1.7 angstrom crystal structure of post-splicing form of a dnae intein2 from synechocystis sp. pcc 6803
34c4d7wA_
not modelled 14.2 32
PDB header:hydrolase
Chain: A: PDB Molecule:sortase family protein;
PDBTitle: crystal structure of sortase c1 (srtc1) from streptococcus agalactiae
35d1mi8a_
not modelled 12.0 25
Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
36d1eb7a2
not modelled 11.9 42
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
37c2lwyA_
not modelled 11.8 26
PDB header:unknown function
Chain: A: PDB Molecule:bacterial intein-like domain;
PDBTitle: solution structure of bacterial intein-like domain from clostridium2 thermocellum
38c1q68B_
not modelled 11.8 50
PDB header:membrane protein/transferase
Chain: B: PDB Molecule:proto-oncogene tyrosine-protein kinase lck;
PDBTitle: solution structure of t-cell surface glycoprotein cd4 and2 proto-oncogene tyrosine-protein kinase lck fragments
39c4o1rA_
not modelled 11.6 25
PDB header:splicing
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of npudnab intein
40c5k9aA_
not modelled 10.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:putative fimbrial associated sortase-like protein;
PDBTitle: sortase a from corynebacterium diphtheriae
41c4hizA_
not modelled 10.7 33
PDB header:hydrolase,viral protein
Chain: A: PDB Molecule:endosialidase;
PDBTitle: phage phi92 endosialidase
42c3n3vA_
not modelled 10.6 54
PDB header:transferase
Chain: A: PDB Molecule:adenosine monophosphate-protein transferase ibpa;
PDBTitle: crystal structure of ibpafic2-h3717a in complex with adenylylated2 cdc42
43c2nb9A_
not modelled 10.5 24
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of zitp zinc finger
44c3g66A_
not modelled 10.4 26
PDB header:transferase
Chain: A: PDB Molecule:sortase c;
PDBTitle: the crystal structure of streptococcus pneumoniae sortase c2 provides novel insights into catalysis as well as pilin3 substrate specificity
45d1nmla2
not modelled 10.3 33
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:Di-heme cytochrome c peroxidase
46c2imzA_
not modelled 10.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease pi-mtui;
PDBTitle: crystal structure of mtu reca intein splicing domain
47c4rglA_
not modelled 10.1 54
PDB header:dna binding protein
Chain: A: PDB Molecule:filamentation induced by camp protein fic;
PDBTitle: crystal structure of a fic family protein (dde_2494) from2 desulfovibrio desulfuricans g20 at 2.70 a resolution
48c1mpxB_
not modelled 9.9 44
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amino acid ester hydrolase;
PDBTitle: alpha-amino acid ester hydrolase labeled with selenomethionine
49c5jj6A_
not modelled 9.9 62
PDB header:transferase
Chain: A: PDB Molecule:adenosine monophosphate-protein transferase ficd homolog;
PDBTitle: fic-1 (aa134 - 508) from c. elegans
50c3o0pA_
not modelled 9.8 26
PDB header:transferase , hydrolase
Chain: A: PDB Molecule:sortase family protein;
PDBTitle: pilus-related sortase c of group b streptococcus
51c3dd7A_
not modelled 9.7 10
PDB header:ribosome inhibitor
Chain: A: PDB Molecule:death on curing protein;
PDBTitle: structure of doch66y in complex with the c-terminal domain of phd
52d1e7la1
not modelled 9.7 60
Fold:LEM/SAP HeH motif
Superfamily:Recombination endonuclease VII, C-terminal and dimerization domains
Family:Recombination endonuclease VII, C-terminal and dimerization domains
53c2lcjA_
not modelled 9.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:pab polc intein;
PDBTitle: solution nmr structure of pab polii intein
54c2kw8A_
not modelled 8.9 16
PDB header:protein binding
Chain: A: PDB Molecule:lpxtg-site transpeptidase family protein;
PDBTitle: solution structure of bacillus anthracis sortase a (srta)2 transpeptidase
55c1nmlA_
not modelled 8.8 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:di-haem cytochrome c peroxidase;
PDBTitle: di-haemic cytochrome c peroxidase from pseudomonas nautica 617, form2 in (ph 4.0)
56d1am2a_
not modelled 8.7 20
Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Intein (protein splicing domain)
57c2v7sA_
not modelled 8.7 19
PDB header:unknown function
Chain: A: PDB Molecule:probable conserved lipoprotein lppa;
PDBTitle: crystal structure of the putative lipoprotein lppa from2 mycobacterium tuberculosis
58c4g1hA_
not modelled 8.2 28
PDB header:transferase
Chain: A: PDB Molecule:sortase family protein;
PDBTitle: group b streptococcus pilus island 1 sortase c2
59c4ultN_
not modelled 8.0 19
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of verrucarin bound to the yeast 80s ribosome
60c1vxvX_
not modelled 8.0 19
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l24;
PDBTitle: structures of yeast 80s ribosome-trna complexes in the rotated and2 non-rotated conformations (class ii - rotated ribosome with 1 trna,3 this entry contains the large ribosomal subunit proteins)
61c5ldwe_
not modelled 8.0 44
PDB header:oxidoreductase
Chain: E: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: structure of mammalian respiratory complex i, class1
62d1g47a1
not modelled 7.9 30
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
63c4b6aW_
not modelled 7.9 19
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: cryo-em structure of the 60s ribosomal subunit in complex2 with arx1 and rei1
64c4ukeO_
not modelled 7.9 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of cycloheximide bound to the yeast 80s ribosome
65c4ukyO_
not modelled 7.9 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of edeine bound to the yeast 80s ribosome
66c4byuW_
not modelled 7.9 19
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet2 eukaryotic translation initiation complex
67c4bynW_
not modelled 7.9 19
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: cryo-em reconstruction of the 80s-eif5b-met-itrnamet eukaryotic2 translation initiation complex
68c3u5iW_
not modelled 7.9 19
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome b
69c4ukjN_
not modelled 7.9 19
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of blasticidin s bound to the yeast 80s ribosome
70c4uldO_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of nagilactone c bound to the yeast 80s ribosome
71c4uk3O_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of anisomycin bound to the yeast 80s ribosome
72c4ujjO_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of narciclasine bound to the yeast 80s ribosome
73c4ukoN_
not modelled 7.8 19
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of cryptopleurine bound to the yeast 80s ribosome
74c4ul3O_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of geneticin bound to the yeast 80s ribosome
75c4uloO_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of phyllanthoside bound to the yeast 80s ribosome
76c4ul8O_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of homoharringtonine bound to the yeast 80s ribosome
77c4ujoO_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of lycorine bound to the yeast 80s ribosome
78c4ujyN_
not modelled 7.8 19
PDB header:ribosome
Chain: N: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of t-2 toxin bound to the yeast 80s ribosome
79c4uliO_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of pactamycin bound to the yeast 80s ribosome
80c4ujtO_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of lactimidomycin bound to the yeast 80s ribosome
81c4uk8O_
not modelled 7.8 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of cca trinucleotide bound to the yeast 80s ribosome
82d1at0a_
not modelled 7.7 10
Fold:Hedgehog/intein (Hint) domain
Superfamily:Hedgehog/intein (Hint) domain
Family:Hedgehog C-terminal (Hog) autoprocessing domain
83d3bzka2
not modelled 7.6 50
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Tex HhH-containing domain-like
84c4uktO_
not modelled 7.6 19
PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: crystal structure of deoxynivalenol bound to the yeast 80s ribosome
85c4v194_
not modelled 7.6 17
PDB header:ribosome
Chain: 4: PDB Molecule:mitoribosomal protein bl31m, mrpl55;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
86d1oa8a_
not modelled 7.5 14
Fold:AXH domain
Superfamily:AXH domain
Family:AXH domain
87c3hq7A_
not modelled 7.4 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c551 peroxidase;
PDBTitle: ccpa from g. sulfurreducens, g94k/k97q/r100i variant
88c3izcZ_
not modelled 7.4 19
PDB header:ribosome
Chain: Z: PDB Molecule:60s ribosomal protein rpl24 (l24e);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
89c4a1eT_
not modelled 7.3 31
PDB header:ribosome
Chain: T: PDB Molecule:rpl24;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
90c5j8jA_
not modelled 7.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:histone deacetylase hda1;
PDBTitle: a histone deacetylase from saccharomyces cerevisiae
91c1x0gA_
not modelled 7.0 50
PDB header:metal binding protein
Chain: A: PDB Molecule:isca;
PDBTitle: crystal structure of isca with the [2fe-2s] cluster
92c2in0A_
not modelled 7.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease pi-mtui;
PDBTitle: crystal structure of mtu reca intein splicing domain
93c3j39W_
not modelled 6.9 15
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l24;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
94c2yiuE_
not modelled 6.9 63
PDB header:oxidoreductase
Chain: E: PDB Molecule:cytochrome c1, heme protein;
PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution
95c2jmzA_
not modelled 6.8 30
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein mj0781;
PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii
96d2j3wa1
not modelled 6.8 28
Fold:Profilin-like
Superfamily:SNARE-like
Family:Sedlin (SEDL)
97c2w1jB_
not modelled 6.7 26
PDB header:transferase
Chain: B: PDB Molecule:putative sortase;
PDBTitle: crystal structure of sortase c-1 (srtc-1) from streptococcus2 pneumoniae
98c2g9pA_
not modelled 6.7 20
PDB header:antimicrobial protein
Chain: A: PDB Molecule:antimicrobial peptide latarcin 2a;
PDBTitle: nmr structure of a novel antimicrobial peptide, latarcin 2a,2 from spider (lachesana tarabaevi) venom
99c5ionA_
not modelled 6.6 36
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 13

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