Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1302_(rfe)_1458301_1459515
DateWed Jul 31 22:05:40 BST 2019
Unique Job IDec88abc637f2d86f
SequenceVQYGLEVSSD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:61.548 Y:56.983 Z:41.779
Model (left) based on template c4j72A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
Confidence and coverage
Confidence:100.0% Coverage: 75%
303 residues ( 75% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4j72A_



100.0 26
PDB header:transferase
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
2c5jnqA_



100.0 23
PDB header:transferase/antibiotic
Chain: A: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: mray tunicamycin complex
3c4j72B_



100.0 26
PDB header:transferase
Chain: B: PDB Molecule:phospho-n-acetylmuramoyl-pentapeptide-transferase;
PDBTitle: crystal structure of polyprenyl-phosphate n-acetyl hexosamine 1-2 phosphate transferase
4c5levA_



100.0 18
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine--dolichyl-phosphate n-
PDBTitle: crystal structure of human udp-n-acetylglucosamine-dolichyl-phosphate2 n-acetylglucosaminephosphotransferase (dpagt1) (v264g mutant)
5c6m97A_



45.5 21
PDB header:transport protein
Chain: A: PDB Molecule:chimera protein of high affinity copper uptake protein 1
PDBTitle: crystal structure of the high-affinity copper transporter ctr1
6c4q0pA_



24.7 44
PDB header:isomerase
Chain: A: PDB Molecule:l-ribose isomerase;
PDBTitle: crystal structure of acinetobacter sp. dl28 l-ribose isomerase in2 complex with l-ribose
7c5gasN_



21.0 17
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
8d2q7ra1



20.0 16
Fold:MAPEG domain-like
Superfamily:MAPEG domain-like
Family:MAPEG domain
9c5un8B_



17.7 27
PDB header:hydrolase
Chain: B: PDB Molecule:protein o-glcnacase;
PDBTitle: crystal structure of human o-glcnacase in complex with glycopeptide2 p53
10d2cbia2



17.5 20
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
11d2choa2



16.1 27
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
12c2cbjA_



14.9 20
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase;
PDBTitle: structure of the clostridium perfringens nagj family 84 glycoside2 hydrolase, a homologue of human o-glcnacase in complex with pugnac
13c2choA_



14.3 27
PDB header:hydrolase
Chain: A: PDB Molecule:glucosaminidase;
PDBTitle: bacteroides thetaiotaomicron hexosaminidase with o-2 glcnacase activity
14c2uuiA_



14.2 13
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
15d2cpwa1



13.2 24
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
16c2xsbA_



12.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: ogoga pugnac complex
17c2pnoI_



12.2 14
PDB header:lyase
Chain: I: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
18c2pnoJ_



12.2 14
PDB header:lyase
Chain: J: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
19c2pnoE_



12.2 14
PDB header:lyase
Chain: E: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
20c2pnoL_



12.2 14
PDB header:lyase
Chain: L: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
21c2pnoH_



not modelled 12.2 14
PDB header:lyase
Chain: H: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
22c2pnoB_



not modelled 12.2 14
PDB header:lyase
Chain: B: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
23c2pnoF_



not modelled 12.2 14
PDB header:lyase
Chain: F: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
24c2pnoG_



not modelled 12.2 14
PDB header:lyase
Chain: G: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
25c2pnoC_



not modelled 12.2 14
PDB header:lyase
Chain: C: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
26c2pnoD_



not modelled 12.2 14
PDB header:lyase
Chain: D: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
27c2pnoK_



not modelled 12.2 14
PDB header:lyase
Chain: K: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
28c2pnoA_



not modelled 12.2 14
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
29d2uuia1



not modelled 12.2 14
Fold:MAPEG domain-like
Superfamily:MAPEG domain-like
Family:MAPEG domain
30c2eq7C_



not modelled 12.2 20
PDB header:oxidoreductase
Chain: C: PDB Molecule:2-oxoglutarate dehydrogenase e2 component;
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
31c3b29A_



not modelled 10.9 14
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: human leukotriene c4 synthase in complex with dodecyl-beta-d-2 selenomaltoside
32d1uoua1



not modelled 9.3 10
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
33c5diyB_



not modelled 8.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:hyaluronidase;
PDBTitle: thermobaculum terrenum o-glcnac hydrolase mutant - d120n
34c2k74A_



not modelled 7.5 19
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
35c6aztA_



not modelled 7.5 23
PDB header:plant protein
Chain: A: PDB Molecule:asparaginyl endopeptidase 1;
PDBTitle: asparaginyl endopeptidase 1 bound to aan peptide, a tetrahedral2 intermediate
36c3bg2A_



not modelled 6.9 23
PDB header:hydrolase
Chain: A: PDB Molecule:dgtp triphosphohydrolase;
PDBTitle: crystal structure of deoxyguanosinetriphosphate triphosphohydrolase2 from flavobacterium sp. med217
37d2tpta1



not modelled 6.6 12
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
38d1brwa1



not modelled 6.5 5
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
39c2eq8C_



not modelled 6.0 38
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
40d2idaa1



not modelled 5.9 25
Fold:RING/U-box
Superfamily:RING/U-box
Family:Zf-UBP
41c4r7qA_



not modelled 5.8 9
PDB header:signaling protein
Chain: A: PDB Molecule:sensor histidine kinase;
PDBTitle: the structure of a sensor domain of a histidine kinase from vibrio2 cholerae o1 biovar eltor str. n16961
42c1ic9A_



not modelled 5.8 50
PDB header:de novo protein
Chain: A: PDB Molecule:th10aox;
PDBTitle: nmr solution structure of the designed beta-sheet mini-2 protein th10aox
43c2v1nA_



not modelled 5.8 29
PDB header:nuclear protein
Chain: A: PDB Molecule:protein kin homolog;
PDBTitle: solution structure of the region 51-160 of human kin172 reveals a winged helix fold
44c1iclA_



not modelled 5.7 50
PDB header:de novo protein
Chain: A: PDB Molecule:th1ox;
PDBTitle: solution structure of designed beta-sheet mini-protein th1ox
45c2kdcC_



not modelled 5.7 10
PDB header:transferase
Chain: C: PDB Molecule:diacylglycerol kinase;
PDBTitle: nmr solution structure of e. coli diacylglycerol kinase2 (dagk) in dpc micelles
46d2pila_



not modelled 5.7 25
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
47d1ijwc_



not modelled 5.6 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Recombinase DNA-binding domain
48c2eq9C_



not modelled 5.6 38
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyruvate dehydrogenase complex, dihydrolipoamide
PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb
49d1o17a1



not modelled 5.6 9
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
50c2cooA_



not modelled 5.6 38
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase component of branched-
PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase
51d1y0za_



not modelled 5.5 24
Fold:Double-stranded beta-helix
Superfamily:Clavaminate synthase-like
Family:gamma-Butyrobetaine hydroxylase
52c1w3dA_



not modelled 5.4 31
PDB header:transferase
Chain: A: PDB Molecule:dihydrolipoyllysine-residue acetyltransferase component of
PDBTitle: nmr structure of the peripheral-subunit binding domain of bacillus2 stearothermophilus e2p
53d2cyua1



not modelled 5.4 15
Fold:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Superfamily:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
Family:Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
54c3sokB_



not modelled 5.3 29
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
55c4awaA_



not modelled 5.3 19
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:legumain;
PDBTitle: crystal structure of active legumain in complex with yvad-cmk2 at ph 5.0
56d1v8ga1



not modelled 5.3 12
Fold:Methionine synthase domain-like
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
57d2c42a2



not modelled 5.2 46
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:PFOR PP module
58c4qoyE_



not modelled 5.1 38
PDB header:oxidoreductase
Chain: E: PDB Molecule:pyruvate dehydrogenase (dihydrolipoyltransacetylase
PDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
59c4rymA_



not modelled 5.1 12
PDB header:membrane protein
Chain: A: PDB Molecule:integral membrane protein;
PDBTitle: crystal structure of bctspo iodo type1 monomer
60c5mlc7_



not modelled 5.1 14
PDB header:ribosome
Chain: 7: PDB Molecule:psrp5alpha, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below