Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1303_(-)_1459772_1460257
DateWed Jul 31 22:05:40 BST 2019
Unique Job ID09a044be383c4c93
SequenceVTTPAQDAPL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.936 Y:49.358 Z:33.002
Model (left) based on template c3ug9A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:archaeal-type opsin 1, archaeal-type opsin 2;
PDBTitle: crystal structure of the closed state of channelrhodopsin
Confidence and coverage
Confidence: 62.7% Coverage: 63%
101 residues ( 63% of your sequence) have been modelled with 62.7% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ug9A_



62.7 17
PDB header:membrane protein
Chain: A: PDB Molecule:archaeal-type opsin 1, archaeal-type opsin 2;
PDBTitle: crystal structure of the closed state of channelrhodopsin
2c4ezdB_



61.9 21
PDB header:transport protein
Chain: B: PDB Molecule:urea transporter 1;
PDBTitle: crystal structure of the ut-b urea transporter from bos taurus bound2 to selenourea
3c5zihA_



57.7 11
PDB header:membrane protein
Chain: A: PDB Molecule:sensory opsin a,chrimson;
PDBTitle: crystal structure of the red light-activated channelrhodopsin2 chrimson.
4c3k3gA_



57.3 19
PDB header:transport protein
Chain: A: PDB Molecule:urea transporter;
PDBTitle: crystal structure of the urea transporter from desulfovibrio vulgaris2 bound to 1,3-dimethylurea
5c6eyuA_



20.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: crystal structure of the inward h(+) pump xenorhodopsin
6d1fp1d1



17.6 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
7c6csmC_



16.9 10
PDB header:membrane protein
Chain: C: PDB Molecule:gtacr1;
PDBTitle: crystal structure of the natural light-gated anion channel gtacr1
8c5tr1A_



16.2 19
PDB header:transport protein
Chain: A: PDB Molecule:chloride channel protein;
PDBTitle: cryo-electron microscopy structure of a bovine clc-k chloride channel,2 alternate (class 2) conformation
9c4mt1A_



15.0 22
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
10c2l35A_



11.5 28
PDB header:protein binding
Chain: A: PDB Molecule:dap12-nkg2c_tm;
PDBTitle: structure of the dap12-nkg2c transmembrane heterotrimer
11c5iwsA_



11.3 13
PDB header:transferase
Chain: A: PDB Molecule:protein-n(pi)-phosphohistidine-sugar phosphotransferase
PDBTitle: crystal structure of the transporter malt, the eiic domain from the2 maltose-specific phosphotransferase system
12c5vaqC_



10.8 78
PDB header:signaling protein
Chain: C: PDB Molecule:fibroblast growth factor 21;
PDBTitle: crystal structure of beta-klotho in complex with fgf21ct
13c1o7dD_



10.3 75
PDB header:hydrolase
Chain: D: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
14c6qvcB_



9.0 19
PDB header:membrane protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: cryoem structure of the human clc-1 chloride channel, cbs state 1
15c3orgB_



8.9 22
PDB header:transport protein
Chain: B: PDB Molecule:cmclc;
PDBTitle: crystal structure of a eukaryotic clc transporter
16c6o7ua_



8.7 26
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
17d1kyza1



8.1 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Plant O-methyltransferase, N-terminal domain
18c4jspA_



8.1 14
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase mtor;
PDBTitle: structure of mtordeltan-mlst8-atpgammas-mg complex
19c2n90B_



6.5 26
PDB header:transferase
Chain: B: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
20c2n90A_



6.5 26
PDB header:transferase
Chain: A: PDB Molecule:high affinity nerve growth factor receptor;
PDBTitle: trka transmembrane domain nmr structure in dpc micelles
21c6coyB_



not modelled 6.3 19
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: human clc-1 chloride ion channel, transmembrane domain
22c2jwaA_



not modelled 6.2 67
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure
23c2ks1A_



not modelled 6.2 67
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
24c5o60b_



not modelled 5.8 21
PDB header:ribosome
Chain: B: PDB Molecule:5s rrna;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
25c5ldwc_



not modelled 5.5 43
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class1
26c5lc5c_



not modelled 5.5 43
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class2
27c2mltB_



not modelled 5.4 53
PDB header:toxin (hemolytic polypeptide)
Chain: B: PDB Molecule:melittin;
PDBTitle: melittin
28c2mltA_



not modelled 5.4 53
PDB header:toxin (hemolytic polypeptide)
Chain: A: PDB Molecule:melittin;
PDBTitle: melittin
29c6o4mB_



not modelled 5.4 53
PDB header:toxin
Chain: B: PDB Molecule:melittin;
PDBTitle: racemic melittin
30c6dstA_



not modelled 5.4 53
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: recombinant melittin
31c6o4mA_



not modelled 5.4 53
PDB header:toxin
Chain: A: PDB Molecule:melittin;
PDBTitle: racemic melittin
32c6d0nA_



not modelled 5.2 23
PDB header:transport protein
Chain: A: PDB Molecule:clc-type fluoride/proton antiporter;
PDBTitle: crystal structure of a clc-type fluoride/proton antiporter, v319g2 mutant

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below