Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1304_(atpB)_1460250_1461002
DateWed Jul 31 22:05:40 BST 2019
Unique Job ID4fbcaa65146ea89b
SequenceMTETILAAQI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:63.366 Y:48.041 Z:55.829
Model (left) based on template c6fkia_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:atp synthase subunit alpha, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
Confidence and coverage
Confidence:100.0% Coverage: 89%
223 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6fkia_
100.0 31
PDB header:membrane protein
Chain: A: PDB Molecule:atp synthase subunit alpha, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
2c6b2za_
100.0 25
PDB header:membrane protein
Chain: A: PDB Molecule:atp synthase protein 8;
PDBTitle: cryo-em structure of the dimeric fo region of yeast mitochondrial atp2 synthase
3c5t4pK_
100.0 32
PDB header:hydrolase
Chain: K: PDB Molecule:atp synthase subunit a;
PDBTitle: autoinhibited e. coli atp synthase state 2
4c5fikW_
100.0 22
PDB header:hydrolase
Chain: W: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: bovine mitochondrial atp synthase state 3a
5c5filW_
100.0 22
PDB header:atp synthase
Chain: W: PDB Molecule:atp synthase subunit beta, mitochondrial;
PDBTitle: bovine mitochondrial atp synthase state 3b
6c6f36M_
100.0 17
PDB header:proton transport
Chain: M: PDB Molecule:mitochondrial atp synthase subunit 6;
PDBTitle: polytomella fo model
7d1c17m_
100.0 34
Fold:F1F0 ATP synthase subunit A
Superfamily:F1F0 ATP synthase subunit A
Family:F1F0 ATP synthase subunit A
8c5lqxY_
100.0 25
PDB header:hydrolase
Chain: Y: PDB Molecule:atp synthase subunit a;
PDBTitle: structure of f-atpase from pichia angusta, state3
9c5dn6X_
99.8 36
PDB header:hydrolase
Chain: X: PDB Molecule:atp synthase subunit a,atp synthase subunit a;
PDBTitle: atp synthase from paracoccus denitrificans
10c3qbrA_
30.8 8
PDB header:apoptosis
Chain: A: PDB Molecule:sjchgc06286 protein;
PDBTitle: bakbh3 in complex with sja
11c6eioA_
25.0 38
PDB header:antifreeze protein
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: crystal structure of an ice binding protein from an antarctic2 biological consortium
12c2n2uA_
22.1 27
PDB header:unknown function, structural genomics
Chain: A: PDB Molecule:or358;
PDBTitle: solution nmr structure of de novo designed ferredoxin fold protein2 sfr3, northeast structural genomics consortium (nesg) target or358
13c2k3iA_
21.3 45
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yiis;
PDBTitle: solution nmr structure of protein yiis from shigella flexneri.2 northeast structural genomics consortium target sfr90
14c2dw3A_
20.7 33
PDB header:photosynthesis
Chain: A: PDB Molecule:intrinsic membrane protein pufx;
PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein
15c2k2eA_
20.0 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bp2786;
PDBTitle: solution nmr structure of bordetella pertussis protein2 bp2786, a mth938-like domain. northeast structural3 genomics consortium target ber31
16c2kpoA_
19.6 27
PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x2 fold protein;
PDBTitle: solution nmr structure of de novo designed rossmann 2x2 fold protein,2 northeast structural genomics consortium target or16
17c5vfkA_
19.5 33
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of an archaeal duf61 family protein sso0941
18c2kjgA_
18.9 18
PDB header:metal binding protein
Chain: A: PDB Molecule:archaeal protein sso6904;
PDBTitle: solution structure of an archaeal protein sso6904 from2 hyperthermophilic sulfolobus solfataricus
19c6eyyB_
18.8 25
PDB header:viral protein
Chain: B: PDB Molecule:acriia6;
PDBTitle: anti-crispr acriia6 cubic form
20d1o0la_
18.6 10
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
21c2mr6A_
not modelled 17.9 36
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or462;
PDBTitle: solution nmr structure of de novo designed protein, northeast2 structural genomics consortium (nesg) target or462
22c5kpeA_
not modelled 16.6 27
PDB header:de novo protein
Chain: A: PDB Molecule:de novo beta sheet design protein or664;
PDBTitle: solution nmr structure of denovo beta sheet design protein, northeast2 structural genomics consortium (nesg) target or664
23c2o2fA_
not modelled 16.4 6
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: solution structure of the anti-apoptotic protein bcl-2 in2 complex with an acyl-sulfonamide-based ligand
24c2xa0A_
not modelled 16.3 6
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bcl-2;
PDBTitle: crystal structure of bcl-2 in complex with a bax bh32 peptide
25c5wddA_
not modelled 16.2 14
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-related ovarian killer protein;
PDBTitle: crystal structure of chicken bok
26c2lciA_
not modelled 15.6 27
PDB header:de novo protein
Chain: A: PDB Molecule:protein or36;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or36 (casd3 target)
27d1f16a_
not modelled 15.4 16
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
28c5twaA_
not modelled 15.3 16
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-x homologous protein, bhp2;
PDBTitle: crystal structure of geodia cydonium bhp2 in complex with lubomirskia2 baicalensis bak-2
29c2lndA_
not modelled 15.1 27
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein, pfk fold;
PDBTitle: solution nmr structure of de novo designed protein, pfk fold,2 northeast structural genomics consortium target or134
30d1bxla_
not modelled 15.1 8
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
31d1pq1a_
not modelled 14.8 8
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
32c2krxA_
not modelled 14.6 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
33c2n3zA_
not modelled 14.5 27
PDB header:structural genomics, de novo protein
Chain: A: PDB Molecule:or446;
PDBTitle: solution nmr structure of de novo designed protein, rossmann2x2 fold,2 northeast structural genomics consortium (nesg) target or446
34d1zy3a1
not modelled 14.3 10
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
35c2mdtA_
not modelled 14.2 25
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: a pilt n-terminus domain protein sso1118 from hyperthemophilic2 archaeon sulfolobus solfataricus p2
36c3pk1A_
not modelled 13.8 8
PDB header:apoptosis/apoptosis regulator
Chain: A: PDB Molecule:induced myeloid leukemia cell differentiation protein mcl-
PDBTitle: crystal structure of mcl-1 in complex with the baxbh3 domain
37d1g5ma_
not modelled 13.8 6
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
38c3rq9B_
not modelled 13.8 30
PDB header:tse2-binding protein
Chain: B: PDB Molecule:type vi secretion immunity protein;
PDBTitle: structure of tsi2, a tse2-immunity protein from pseudomonas aeruginosa
39c3gaeA_
not modelled 13.7 36
PDB header:nuclear protein
Chain: A: PDB Molecule:protein doa1;
PDBTitle: crystal structure of pul
40c2l5qA_
not modelled 13.7 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of bvu_3817 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr159
41c2kvsA_
not modelled 13.5 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mw0776;
PDBTitle: nmr solution structure of q7a1e8 protein from staphylococcus2 aureus: northeast structural genomics consortium target:3 zr215
42c2l82A_
not modelled 13.5 30
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or32;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or32
43c2ln3A_
not modelled 13.0 25
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or135;
PDBTitle: solution nmr structure of de novo designed protein, if3-like fold,2 northeast structural genomics consortium target or135 (casd target)
44d1ysga1
not modelled 12.9 8
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
45c2l69A_
not modelled 12.8 30
PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x3 fold protein;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28
46c2kl0A_
not modelled 12.7 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative thiamin biosynthesis this;
PDBTitle: solution nmr structure of rhodopseudomonas palustris rpa3574,2 northeast structural genomics consortium (nesg) target rpr325
47c2mblA_
not modelled 12.6 27
PDB header:de novo protein
Chain: A: PDB Molecule:top7 fold protein top7m13;
PDBTitle: solution nmr structure of de novo designed top7 fold protein top7m13,2 northeast structural genomics consortium (nesg) target or33
48c4hhuA_
not modelled 12.6 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:or280;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or280.
49c2k5iA_
not modelled 12.4 40
PDB header:metal transport
Chain: A: PDB Molecule:iron transport protein;
PDBTitle: solution structure of iron(ii) transport protein a from2 clostridium thermocellum , northeast structural genomics3 consortium (nesg) target vr131
50c2l9uA_
not modelled 12.3 24
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
51c6hyhA_
not modelled 12.2 33
PDB header:sugar binding protein
Chain: A: PDB Molecule:periplasmic binding protein/laci transcriptional regulator;
PDBTitle: crystal structure of msmeg_1712 from mycobacterium smegmatis in2 complex with beta-d-fucofuranose
52c2kt9A_
not modelled 12.2 20
PDB header:ribosomal protein
Chain: A: PDB Molecule:probable 30s ribosomal protein psrp-3;
PDBTitle: solution nmr structure of probable 30s ribosomal protein2 psrp-3 (ycf65-like protein) from synechocystis sp. (strain3 pcc 6803), northeast structural genomics consortium target4 target sgr46
53c3ebbD_
not modelled 12.0 55
PDB header:chaperone
Chain: D: PDB Molecule:phospholipase a2-activating protein;
PDBTitle: plap/p97 complex
54c2n2tA_
not modelled 11.9 30
PDB header:unknown function, structural genomics
Chain: A: PDB Molecule:or303;
PDBTitle: solution nmr structure of de novo designed protein (fda_60), northeast2 structural genomics consortium (nesg) target or303
55c2kptA_
not modelled 11.9 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative secreted protein;
PDBTitle: solution nmr structure of the n-terminal domain of cg24962 protein from corynebacterium glutamicum. northeast3 structural genomics consortium target cgr26a
56d2ponb1
not modelled 11.9 8
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
57c2w50B_
not modelled 11.7 29
PDB header:hormone
Chain: B: PDB Molecule:armet-like protein 1;
PDBTitle: n-terminal domain of human conserved dopamine neurotrophic factor2 (cdnf)
58d2jm6b1
not modelled 11.7 10
Fold:Toxins' membrane translocation domains
Superfamily:Bcl-2 inhibitors of programmed cell death
Family:Bcl-2 inhibitors of programmed cell death
59c2k9qB_
not modelled 11.6 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of hth_xre family transcriptional2 regulator bt_p548217 from bacteroides thetaiotaomicron.3 northeast structural genomics consortium target btr244.
60c2ltaA_
not modelled 11.5 28
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein;
PDBTitle: solution nmr structure of de novo designed protein, rossmann 3x1 fold,2 northeast structural genomics consortium target or157
61c2k3dA_
not modelled 11.5 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0334 protein;
PDBTitle: solution nmr structure of the folded 79 residue fragment of2 lin0334 from listeria innocua. northeast structural3 genomics consortium target lkr15
62c2kcuA_
not modelled 11.2 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ctr107;
PDBTitle: nmr solution structure of an uncharacterized protein from chlorobium2 tepidum. northeast structural genomics target ctr107
63c6c2uA_
not modelled 11.1 36
PDB header:de novo protein
Chain: A: PDB Molecule:phosphate-loop protein;
PDBTitle: solution structure of a phosphate-loop protein
64c2kvoA_
not modelled 11.1 23
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii reaction center psb28 protein;
PDBTitle: solution nmr structure of photosystem ii reaction center psb28 protein2 from synechocystis sp.(strain pcc 6803), northeast structural3 genomics consortium target sgr171
65c2mq8A_
not modelled 11.1 33
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein lfr1;
PDBTitle: solution nmr structure of de novo designed protein lfr1 1 with2 ferredoxin fold, northeast structural genomics consortium (nesg)3 target or414
66c2k5rA_
not modelled 11.0 30
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein xf2673;
PDBTitle: solution nmr structure of xf2673 from xylella fastidiosa.2 northeast structural genomics consortium target xfr39
67c2jrpA_
not modelled 11.0 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
68c4rmbB_
not modelled 11.0 30
PDB header:cell adhesion
Chain: B: PDB Molecule:serine rich repeat protein-1 (srr-1);
PDBTitle: crystal structure of keratin 4 binding domain of surface adhesin srr-12 of s.agalactiae
69d1gwma_
not modelled 10.8 38
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 29 carbohydrate binding module, CBM29
70c2kt7A_
not modelled 10.7 38
PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:putative peptidoglycan bound protein (lpxtg
PDBTitle: solution nmr structure of mucin-binding domain of protein2 lmo0835 from listeria monocytogenes, northeast structural3 genomics consortium target lmr64a
71c2k4nA_
not modelled 10.7 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein pf0246;
PDBTitle: nmr structure of protein pf0246 from pyrococcus furiosus:2 target pfr75 from the northeast structural genomics3 consortium
72c5xbcB_
not modelled 10.6 30
PDB header:hydrolase
Chain: B: PDB Molecule:nsp1 protein;
PDBTitle: crystal structure basis for pedv nsp1
73d1kn0a_
not modelled 10.5 50
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:The homologous-pairing domain of Rad52 recombinase
74d1m3va2
not modelled 10.4 83
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
75d1pc2a_
not modelled 10.4 33
Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
76c2yv6A_
not modelled 10.2 10
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2 homologous antagonist/killer;
PDBTitle: crystal structure of human bcl-2 family protein bak
77c2muyA_
not modelled 10.1 27
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: the solution structure of the ftsh periplasmic n-domain
78c2l01A_
not modelled 10.1 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of protein bvu3908 from bacteroides vulgatus,2 northeast structural genomics consortium target bvr153
79c2kcyA_
not modelled 10.1 23
PDB header:ribosomal protein
Chain: A: PDB Molecule:30s ribosomal protein s8e;
PDBTitle: solution structure of ribosomal protein s8e from2 methanothermobacter thermautotrophicus,3 northeaststructural genomics consortium (nesg) target tr71d
80c2jwyA_
not modelled 10.0 38
PDB header:lipoprotein
Chain: A: PDB Molecule:uncharacterized lipoprotein yaji;
PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540
81c5wosA_
not modelled 10.0 16
PDB header:viral protein
Chain: A: PDB Molecule:cnpv058 bcl-2 like protein;
PDBTitle: structural and functional insights into canarypox virus cnp0582 regulation of apoptosis
82c5gasN_
not modelled 9.7 17
PDB header:hydrolase
Chain: N: PDB Molecule:archaeal/vacuolar-type h+-atpase subunit i;
PDBTitle: thermus thermophilus v/a-atpase, conformation 2
83c4s1hA_
not modelled 9.7 25
PDB header:transferase
Chain: A: PDB Molecule:pyridoxal kinase;
PDBTitle: pyridoxal kinase of entamoeba histolytica with adp
84c6gboG_
not modelled 9.7 38
PDB header:viral protein
Chain: G: PDB Molecule:polymerase cofactor vp35;
PDBTitle: crystal structure of the oligomerization domain of vp35 from ebola2 virus
85c5w63A_
not modelled 9.6 14
PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis regulator bax;
PDBTitle: crystal structure of channel catfish bax
86c2kpsA_
not modelled 9.4 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of domain iv from the ybbr family protein of2 desulfitobacterium hafniense
87c2khdA_
not modelled 9.4 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vc_a0919;
PDBTitle: solution nmr structure of vc_a0919 from vibrio cholerae.2 northeast structural genomics consortium target vcr52
88c3pddA_
not modelled 9.3 27
PDB header:unknown function
Chain: A: PDB Molecule:glycoside hydrolase, family 9;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
89c3pstA_
not modelled 9.3 36
PDB header:nuclear protein
Chain: A: PDB Molecule:protein doa1;
PDBTitle: crystal structure of pul and pfu(mutate) domain
90c2jwxA_
not modelled 9.2 38
PDB header:apoptosis, isomerase
Chain: A: PDB Molecule:fk506-binding protein 8 variant;
PDBTitle: solution structure of the n-terminal domain of human fkbp382 (fkbp38ntd)
91c2gm2A_
not modelled 9.1 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: nmr structure of xanthomonas campestris xcc1710: northeast2 structural genomics consortium target xcr35
92c4ediC_
not modelled 9.1 38
PDB header:transport protein
Chain: C: PDB Molecule:ethanolamine utilization protein;
PDBTitle: disulfide bonded eutl from clostridium perfringens
93c2jmrA_
not modelled 9.0 29
PDB header:cell adhesion
Chain: A: PDB Molecule:fimf;
PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf
94d1mzga_
not modelled 8.8 33
Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
95c4ix5B_
not modelled 8.8 36
PDB header:transferase
Chain: B: PDB Molecule:msstt7d protein;
PDBTitle: crystal structure of a stt7 homolog from micromonas algae in complex2 with amp-pnp
96c2mraA_
not modelled 8.8 38
PDB header:de novo protein
Chain: A: PDB Molecule:de novo designed protein or459;
PDBTitle: solution nmr structure of de novo designed protein, northeast2 structural genomics consortium (nesg) target or459
97c2kl8A_
not modelled 8.7 38
PDB header:de novo protein
Chain: A: PDB Molecule:or15;
PDBTitle: solution nmr structure of de novo designed ferredoxin-like fold2 protein, northeast structural genomics consortium target or15
98c4ux3B_
not modelled 8.4 31
PDB header:protein binding
Chain: B: PDB Molecule:mitotic chromosome determinant-related protein;
PDBTitle: cohesin smc3-hd:scc1-n complex from yeast
99c2jz2A_
not modelled 8.3 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ssl0352 protein;
PDBTitle: solution nmr structure of ssl0352 protein from synechocystis sp. pcc2 6803. northeast structural genomics consortium target sgr42

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below