Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1312_(-)_1467694_1468137
DateWed Jul 31 22:05:41 BST 2019
Unique Job IDa0cdb02abf4401f0
SequenceMSAPMIGMVV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.484 Y:26.516 Z:19.494
Model (left) based on template c2lxfA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a potential acylphosphatase from giardia2 lamblia, seattle structural genomics center for infectious disease3 target gilaa.01396.a
Confidence and coverage
Confidence: 66.9% Coverage: 22%
33 residues ( 22% of your sequence) have been modelled with 66.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2lxfA_
66.9 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of a potential acylphosphatase from giardia2 lamblia, seattle structural genomics center for infectious disease3 target gilaa.01396.a
2c2bjeA_
65.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:acylphosphatase;
PDBTitle: acylphosphatase from sulfolobus solfataricus. monclinic p212 space group
3d1w2ia_
64.6 19
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
4c3br8A_
62.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: crystal structure of acylphosphatase from bacillus subtilis
5c4hi2B_
58.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:acylphosphatase;
PDBTitle: crystal structure of an acylphosphatase protein cage
6d1apsa_
57.1 13
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
7c1uv7A_
43.8 9
PDB header:transport
Chain: A: PDB Molecule:general secretion pathway protein m;
PDBTitle: periplasmic domain of epsm from vibrio cholerae
8d1uv7a_
43.8 9
Fold:RRF/tRNA synthetase additional domain-like
Superfamily:General secretion pathway protein M, EpsM
Family:General secretion pathway protein M, EpsM
9d1ulra_
43.4 29
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
10c2gv1A_
42.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:probable acylphosphatase;
PDBTitle: nmr solution structure of the acylphosphatase from2 eschaerichia coli
11c2kncB_
36.7 15
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
12d2acya_
34.8 19
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
13d1urra_
34.5 23
Fold:Ferredoxin-like
Superfamily:Acylphosphatase/BLUF domain-like
Family:Acylphosphatase-like
14c6ithA_
29.6 28
PDB header:membrane protein
Chain: A: PDB Molecule:syndecan-2;
PDBTitle: structure of the transmembrane domain of syndecan 2 in micelles
15c2pebB_
28.4 22
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative dioxygenase;
PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution
16c5zazA_
21.8 23
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: solution structure of integrin b2 monomer tranmembrane domain in2 bicelle
17d2p8ia1
20.2 22
Fold:Ferredoxin-like
Superfamily:DOPA-like
Family:DOPA dioxygenase-like
18c2m20B_
17.9 19
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
19c6nhwC_
16.2 41
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
20c6nhwA_
16.2 41
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
21c6nhwB_
not modelled 16.2 41
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
22c6nhwD_
not modelled 16.2 41
PDB header:immune system
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
23c6nhwF_
not modelled 16.2 41
PDB header:immune system
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
24c6nhwE_
not modelled 16.2 41
PDB header:immune system
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
25c2rmzA_
not modelled 13.2 15
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-3;
PDBTitle: bicelle-embedded integrin beta3 transmembrane segment
26c2jh3C_
not modelled 12.2 10
PDB header:ribosomal protein
Chain: C: PDB Molecule:ribosomal protein s2-related protein;
PDBTitle: the crystal structure of dr2241 from deinococcus2 radiodurans at 1.9 a resolution reveals a multi-domain3 protein with structural similarity to chelatases but also4 with two additional novel domains
27c6nf8n_
not modelled 12.2 18
PDB header:ribosomal protein
Chain: N: PDB Molecule:28s ribosomal protein s14, mitochondrial;
PDBTitle: structure of human mitochondrial translation initiation factor 3 bound2 to the small ribosomal subunit -class i
28d2j49a1
not modelled 12.0 22
Fold:Taf5 N-terminal domain-like
Superfamily:Taf5 N-terminal domain-like
Family:Taf5 N-terminal domain-like
29d1h3za_
not modelled 10.1 19
Fold:SH3-like barrel
Superfamily:Tudor/PWWP/MBT
Family:PWWP domain
30d1tdha3
not modelled 9.1 33
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins
31c1t5qA_
not modelled 9.0 33
PDB header:hormone/growth factor
Chain: A: PDB Molecule:gastric inhibitory polypeptide;
PDBTitle: solution structure of gip(1-30)amide in tfe/water
32c5camC_
not modelled 8.4 29
PDB header:transcription
Chain: C: PDB Molecule:pupr protein;
PDBTitle: crystal structure of the cytoplasmic domain of the pseudomonas putida2 anti-sigma factor pupr (semet)
33c2yopB_
not modelled 8.3 15
PDB header:apoptosis
Chain: B: PDB Molecule:protein fam3b;
PDBTitle: long wavelength s-sad structure of fam3b pander
34c2ks1B_
not modelled 8.3 25
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
35c2kakA_
not modelled 8.1 58
PDB header:metal binding protein
Chain: A: PDB Molecule:ec protein i/ii;
PDBTitle: solution structure of the beta-e-domain of wheat ec-12 metallothionein
36d1t95a2
not modelled 7.9 19
Fold:FYSH domain
Superfamily:FYSH domain
Family:Hypothetical protein AF0491, N-terminal domain
37c6gtsC_
not modelled 7.5 20
PDB header:transcription
Chain: C: PDB Molecule:duf1778 domain-containing protein;
PDBTitle: structure of the atat-atar complex bound dna
38d2nxpa1
not modelled 7.3 13
Fold:Taf5 N-terminal domain-like
Superfamily:Taf5 N-terminal domain-like
Family:Taf5 N-terminal domain-like
39c2obuA_
not modelled 7.3 33
PDB header:hormone/growth factor
Chain: A: PDB Molecule:gastric inhibitory polypeptide;
PDBTitle: solution structure of gip in tfe/water
40d2j4ba1
not modelled 7.0 22
Fold:Taf5 N-terminal domain-like
Superfamily:Taf5 N-terminal domain-like
Family:Taf5 N-terminal domain-like
41c6ge2A_
not modelled 6.5 26
PDB header:hormone
Chain: A: PDB Molecule:exendin-4;
PDBTitle: exendin-4 based dual glp-1/glucagon receptor agonist
42c6c6lN_
not modelled 6.4 19
PDB header:membrane protein
Chain: N: PDB Molecule:v0 assembly protein 1;
PDBTitle: yeast vacuolar atpase vo in lipid nanodisc
43c6hqaC_
not modelled 6.3 17
PDB header:transcription
Chain: C: PDB Molecule:subunit (90 kda) of tfiid and saga complexes;
PDBTitle: molecular structure of promoter-bound yeast tfiid
44c4fu6A_
not modelled 6.1 22
PDB header:transcription
Chain: A: PDB Molecule:pc4 and sfrs1-interacting protein;
PDBTitle: crystal structure of the psip1 pwwp domain
45c3l6aA_
not modelled 5.9 33
PDB header:translation
Chain: A: PDB Molecule:eukaryotic translation initiation factor 4 gamma 2;
PDBTitle: crystal structure of the c-terminal region of human p97
46c5tgnA_
not modelled 5.9 21
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein sthe_2403 from sphaerobacter thermophilus
47c5cwwB_
not modelled 5.4 38
PDB header:transport protein
Chain: B: PDB Molecule:nucleoporin nup82;
PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below