Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1314c_(-)_1469677_1470258
DateWed Jul 31 22:05:41 BST 2019
Unique Job IDbc021ec6590e25a8
SequenceMAVHLTRIYT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.955 Y:65.868 Z:50.258
Model (left) based on template c3ci1A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:cobalamin adenosyltransferase pduo-like protein;
PDBTitle: structure of the pduo-type atp:co(i)rrinoid adenosyltransferase from2 lactobacillus reuteri complexed with four-coordinate cob(ii)alamin3 and atp
Confidence and coverage
Confidence:100.0% Coverage: 93%
180 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3ci1A_
100.0 37
PDB header:transferase
Chain: A: PDB Molecule:cobalamin adenosyltransferase pduo-like protein;
PDBTitle: structure of the pduo-type atp:co(i)rrinoid adenosyltransferase from2 lactobacillus reuteri complexed with four-coordinate cob(ii)alamin3 and atp
2c2nt8A_
100.0 37
PDB header:transferase
Chain: A: PDB Molecule:cobalamin adenosyltransferase;
PDBTitle: atp bound at the active site of a pduo type atp:co(i)rrinoid2 adenosyltransferase from lactobacillus reuteri
3c2zhzC_
100.0 51
PDB header:transferase
Chain: C: PDB Molecule:atp:cob(i)alamin adenosyltransferase, putative;
PDBTitle: crystal structure of a pduo-type atp:cobalamin adenosyltransferase2 from burkholderia thailandensis
4c2g2dA_
100.0 100
PDB header:transferase
Chain: A: PDB Molecule:atp:cobalamin adenosyltransferase;
PDBTitle: crystal structure of a putative pduo-type atp:cobalamin2 adenosyltransferase from mycobacterium tuberculosis
5c3ke4B_
100.0 40
PDB header:transferase
Chain: B: PDB Molecule:hypothetical cytosolic protein;
PDBTitle: crystal structure of a pduo-type atp:cob(i)alamin adenosyltransferase2 from bacillus cereus
6d1rtyb_
100.0 40
Fold:Ferritin-like
Superfamily:Cobalamin adenosyltransferase-like
Family:Cobalamin adenosyltransferase
7c2ah6B_
100.0 41
PDB header:transferase
Chain: B: PDB Molecule:bh1595, unknown conserved protein;
PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution
8d1rtya_
100.0 42
Fold:Ferritin-like
Superfamily:Cobalamin adenosyltransferase-like
Family:Cobalamin adenosyltransferase
9c1wozA_
100.0 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:177aa long conserved hypothetical protein (st1454);
PDBTitle: crystal structure of uncharacterized protein st1454 from sulfolobus2 tokodaii
10c1wvtA_
100.0 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein st2180;
PDBTitle: crystal structure of uncharacterized protein st2180 from sulfolobus2 tokodaii
11c1nogA_
100.0 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein ta0546;
PDBTitle: crystal structure of conserved protein 0546 from thermoplasma2 acidophilum
12d1noga_
100.0 37
Fold:Ferritin-like
Superfamily:Cobalamin adenosyltransferase-like
Family:Cobalamin adenosyltransferase
13c2idxA_
100.0 39
PDB header:transferase
Chain: A: PDB Molecule:cob(i)yrinic acid a,c-diamide adenosyltransferase;
PDBTitle: structure of human atp:cobalamin adenosyltransferase bound to atp.
14c1wy1B_
100.0 37
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein ph0671;
PDBTitle: crystal structure of the ph0671 protein from pyrococcus horikoshii ot3
15c6c9kQ_
91.8 35
PDB header:de novo protein
Chain: Q: PDB Molecule:darp14 - subunit a with darpin;
PDBTitle: single-particle reconstruction of darp14 - a designed protein scaffold2 displaying ~17kda darpin proteins
16d1niga_
82.4 15
Fold:Ferritin-like
Superfamily:Cobalamin adenosyltransferase-like
Family:Hypothetical protein Ta1238
17c5fv8A_
55.8 23
PDB header:structural protein
Chain: A: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
18d1xrsa_
50.8 24
Fold:TIM beta/alpha-barrel
Superfamily:Cobalamin (vitamin B12)-dependent enzymes
Family:D-lysine 5,6-aminomutase alpha subunit, KamD
19c5fv8B_
47.1 21
PDB header:structural protein
Chain: B: PDB Molecule:fosw;
PDBTitle: structure of cjun-fosw coiled coil complex.
20d1nu9c2
45.5 16
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Staphylocoagulase
Family:Staphylocoagulase
21c3edpB_
not modelled 43.3 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin2111 protein;
PDBTitle: the crystal structure of the protein lin2111 (functionally unknown)2 from listeria innocua clip11262
22c6o9qA_
not modelled 35.8 13
PDB header:lyase
Chain: A: PDB Molecule:sesquisabinene b synthase 1;
PDBTitle: wild-type sasqs1
23c6gnyD_
not modelled 32.5 42
PDB header:structural protein
Chain: D: PDB Molecule:telomere repeats-binding bouquet formation protein 2;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex
24c3t6gB_
not modelled 32.4 24
PDB header:signaling protein, cell adhesion
Chain: B: PDB Molecule:breast cancer anti-estrogen resistance protein 1;
PDBTitle: structure of the complex between nsp3 (shep1) and p130cas
25c3axjB_
not modelled 32.4 16
PDB header:dna binding protein
Chain: B: PDB Molecule:translin associated factor x, isoform b;
PDBTitle: high resolution crystal structure of c3po
26c6gnxB_
not modelled 31.7 42
PDB header:structural protein
Chain: B: PDB Molecule:telomere repeats-binding bouquet formation protein 2;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex -2 selenomethionine derivative
27c3w8hB_
not modelled 25.2 16
PDB header:protein binding/transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase 25;
PDBTitle: crystal structure of ccm3 in complex with the c-terminal regulatory2 domain of stk25
28d2giba1
not modelled 21.8 17
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
29c3f8mA_
not modelled 21.4 22
PDB header:transcription
Chain: A: PDB Molecule:gntr-family protein transcriptional regulator;
PDBTitle: crystal structure of phnf from mycobacterium smegmatis
30c3bwgA_
not modelled 21.2 16
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator yydk;
PDBTitle: the crystal structure of possible transcriptional regulator yydk from2 bacillus subtilis subsp. subtilis str. 168
31d1z9ha1
not modelled 21.0 17
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
32c2gzdC_
not modelled 20.9 29
PDB header:protein transport
Chain: C: PDB Molecule:rab11 family-interacting protein 2;
PDBTitle: crystal structure of rab11 in complex with rab11-fip2
33d1yhta1
not modelled 19.7 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
34c5a7yA_
not modelled 19.6 11
PDB header:transferase
Chain: A: PDB Molecule:trna (adenine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trm10 in2 complex with s-adenosylhomocysteine
35c1n20A_
not modelled 18.5 13
PDB header:isomerase
Chain: A: PDB Molecule:(+)-bornyl diphosphate synthase;
PDBTitle: (+)-bornyl diphosphate synthase: complex with mg and 3-aza-2 2,3-dihydrogeranyl diphosphate
36c2k6sB_
not modelled 18.3 29
PDB header:protein transport
Chain: B: PDB Molecule:rab11fip2 protein;
PDBTitle: structure of rab11-fip2 c-terminal coiled-coil domain
37c5m4aA_
not modelled 17.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:neutral trehalase;
PDBTitle: neutral trehalase nth1 from saccharomyces cerevisiae in complex with2 trehalose
38c4gehB_
not modelled 17.7 15
PDB header:protein binding/transferase
Chain: B: PDB Molecule:serine/threonine-protein kinase mst4;
PDBTitle: crystal structure of mst4 dimerization domain complex with pdcd10
39c5oayA_
not modelled 17.6 19
PDB header:signaling protein
Chain: A: PDB Molecule:transcriptional regulator whib1;
PDBTitle: m. tuberculosis [4fe-4s] protein whib1 is a four-helix bundle that2 forms a no-sensitive complex with sigmaa and regulates the major3 virulence factor esx-1
40c4r1hA_
not modelled 16.9 26
PDB header:transcription regulator
Chain: A: PDB Molecule:lmo0741 protein;
PDBTitle: gntr family transcriptional regulator from listeria monocytogenes
41d1hywa_
not modelled 16.5 17
Fold:gpW/XkdW-like
Superfamily:Head-to-tail joining protein W, gpW
Family:Head-to-tail joining protein W, gpW
42c2q4dB_
not modelled 16.3 14
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lysine decarboxylase-like protein at5g11950;
PDBTitle: ensemble refinement of the crystal structure of a lysine2 decarboxylase-like protein from arabidopsis thaliana gene at5g11950
43c4v36B_
not modelled 16.1 23
PDB header:transferase
Chain: B: PDB Molecule:lysyl-trna-dependent l-ysyl-phosphatidylgycerol synthase;
PDBTitle: the structure of l-pgs from bacillus licheniformis
44c4zs8A_
not modelled 16.0 22
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor dasr;
PDBTitle: crystal structure of ligand-free, full length dasr
45c2j5cB_
not modelled 15.3 14
PDB header:lyase
Chain: B: PDB Molecule:1,8-cineole synthase;
PDBTitle: rational conversion of substrate and product specificity in a2 monoterpene synthase. structural insights into the molecular basis of3 rapid evolution.
46c3by6C_
not modelled 15.3 19
PDB header:transcription regulator
Chain: C: PDB Molecule:predicted transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator from oenococcus oeni
47d2cjra1
not modelled 14.8 17
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
48d1hw1a1
not modelled 14.6 33
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:GntR-like transcriptional regulators
49c5c05A_
not modelled 14.4 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative gamma-terpinene synthase;
PDBTitle: crystal structure of gamma-terpinene synthase from thymus vulgaris
50d1ydha_
not modelled 14.3 14
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
51c3e90C_
not modelled 14.2 21
PDB header:hydrolase
Chain: C: PDB Molecule:ns2b cofactor;
PDBTitle: west nile vi rus ns2b-ns3protease in complexed with2 inhibitor naph-kkr-h
52c4v1ae_
not modelled 14.1 13
PDB header:ribosome
Chain: E: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
53c2ijoA_
not modelled 14.1 21
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:polyprotein;
PDBTitle: crystal structure of the west nile virus ns2b-ns3 protease2 complexed with bovine pancreatic trypsin inhibitor
54c4egzA_
not modelled 14.0 15
PDB header:transcription/dna
Chain: A: PDB Molecule:arabinose metabolism transcriptional repressor;
PDBTitle: crystal structure of arar(dbd) in complex with operator orr3
55d1a4ia2
not modelled 14.0 19
Fold:Aminoacid dehydrogenase-like, N-terminal domain
Superfamily:Aminoacid dehydrogenase-like, N-terminal domain
Family:Tetrahydrofolate dehydrogenase/cyclohydrolase
56c2yl8A_
not modelled 14.0 12
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis
57c3eetA_
not modelled 13.2 22
PDB header:transcription regulator
Chain: A: PDB Molecule:putative gntr-family transcriptional regulator;
PDBTitle: crystal structure of putative gntr-family transcriptional2 regulator
58c2krxA_
not modelled 12.9 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:asl3597 protein;
PDBTitle: solution nmr structure of asl3597 from nostoc sp. pcc7120. northeast2 structural genomics consortium target id nsr244.
59c2cnwF_
not modelled 12.7 15
PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
60c3p5rB_
not modelled 12.6 12
PDB header:lyase
Chain: B: PDB Molecule:taxadiene synthase;
PDBTitle: crystal structure of taxadiene synthase from pacific yew (taxus2 brevifolia) in complex with mg2+ and 2-fluorogeranylgeranyl3 diphosphate
61d2bl7a1
not modelled 12.6 29
Fold:Bromodomain-like
Superfamily:Bacteriocin immunity protein-like
Family:EntA-Im
62c5whaF_
not modelled 12.5 22
PDB header:protein binding
Chain: F: PDB Molecule:miniprotein 225-11;
PDBTitle: kras g12v, bound to gdp and miniprotein 225-11
63c2n5mA_
not modelled 12.4 45
PDB header:unknown function
Chain: A: PDB Molecule:protein khnyn;
PDBTitle: unveiling the structural determinants of kiaa0323 binding preference2 for nedd8
64c5uv1A_
not modelled 11.9 12
PDB header:lyase
Chain: A: PDB Molecule:(+)-limonene synthase;
PDBTitle: crystal structure of (+)-limonene synthase complexed with 2-2 fluorogeranyl diphosphate
65c3g4dB_
not modelled 11.7 16
PDB header:lyase
Chain: B: PDB Molecule:(+)-delta-cadinene synthase isozyme xc1;
PDBTitle: crystal structure of (+)-delta-cadinene synthase from gossypium2 arboreum and evolutionary divergence of metal binding motifs for3 catalysis
66d2b7ma1
not modelled 10.8 14
Fold:alpha-alpha superhelix
Superfamily:Cullin repeat-like
Family:Exocyst complex component
67c1zunA_
not modelled 10.4 9
PDB header:transferase
Chain: A: PDB Molecule:sulfate adenylyltransferase subunit 2;
PDBTitle: crystal structure of a gtp-regulated atp sulfurylase2 heterodimer from pseudomonas syringae
68d1jw2a_
not modelled 10.3 27
Fold:Open three-helical up-and-down bundle
Superfamily:Hemolysin expression modulating protein HHA
Family:Hemolysin expression modulating protein HHA
69c6aqeB_
not modelled 10.2 10
PDB header:transferase
Chain: B: PDB Molecule:molecule a;
PDBTitle: crystal structure of ppk2 in complex with mg atp
70c1hx9A_
not modelled 9.5 18
PDB header:lyase
Chain: A: PDB Molecule:5-epi-aristolochene synthase;
PDBTitle: crystal structure of teas w273s form 1
71c5zzjC_
not modelled 9.5 14
PDB header:lyase
Chain: C: PDB Molecule:santalene synthase;
PDBTitle: crystal structure of a enzyme from santalum album
72c5i4qB_
not modelled 9.5 28
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:contact-dependent inhibitor i;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (domains 2 and 3)
73c5kvrA_
not modelled 9.4 20
PDB header:translation
Chain: A: PDB Molecule:pyruvate dehydrogenase complex repressor;
PDBTitle: x-ray crystal structure of a fragment (1-75) of a transcriptional2 regulator pdhr from escherichia coli cft073
74c4d0gC_
not modelled 9.2 21
PDB header:hydrolase
Chain: C: PDB Molecule:rab11 family-interacting protein 1;
PDBTitle: structure of rab14 in complex with rab-coupling protein (rcp)
75c4bwvB_
not modelled 9.2 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:phosphoadenosine-phosphosulphate reductase;
PDBTitle: structure of adenosine 5-prime-phosphosulfate reductase apr-b from2 physcomitrella patens
76c2gl7C_
not modelled 9.1 55
PDB header:transcription
Chain: C: PDB Molecule:b-cell lymphoma 9 protein;
PDBTitle: crystal structure of a beta-catenin/bcl9/tcf4 complex
77c3sl9D_
not modelled 9.1 55
PDB header:signaling protein, protein binding
Chain: D: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
78c3saeA_
not modelled 9.1 14
PDB header:lyase
Chain: A: PDB Molecule:alpha-bisabolene synthase;
PDBTitle: structure of a three-domain sesquiterpene synthase: a prospective2 target for advanced biofuels production
79c4hamA_
not modelled 9.1 11
PDB header:transcription
Chain: A: PDB Molecule:lmo2241 protein;
PDBTitle: crystal structure of transcriptional antiterminator from listeria2 monocytogenes egd-e
80d1wjwa_
not modelled 9.0 21
Fold:TBP-like
Superfamily:Phosphoglucomutase, C-terminal domain
Family:Phosphoglucomutase, C-terminal domain
81c3s9vD_
not modelled 9.0 10
PDB header:lyase, isomerase
Chain: D: PDB Molecule:abietadiene synthase, chloroplastic;
PDBTitle: abietadiene synthase from abies grandis
82c2jg0A_
not modelled 8.8 50
PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin
83d2jg0a1
not modelled 8.8 50
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Trehalase-like
84c4heoA_
not modelled 8.8 31
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
85d1czan2
not modelled 8.8 16
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
86c1unyA_
not modelled 8.7 29
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
87c3sl9F_
not modelled 8.7 28
PDB header:signaling protein, protein binding
Chain: F: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
88c3sl9C_
not modelled 8.7 28
PDB header:signaling protein, protein binding
Chain: C: PDB Molecule:b-cell cll/lymphoma 9 protein;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
89c6c48D_
not modelled 8.7 16
PDB header:cell cycle/dna binding
Chain: D: PDB Molecule:protein lin-9 homolog;
PDBTitle: crystal structure of b-myb-lin9-lin52 complex
90c6bk4A_
not modelled 8.7 18
PDB header:rna binding protein
Chain: A: PDB Molecule:caprin homolog;
PDBTitle: crystal structure of the hr-1 domain of drosophila caprin in the2 p212121 space group
91c1e2xA_
not modelled 8.6 25
PDB header:transcriptional regulation
Chain: A: PDB Molecule:fatty acid metabolism regulator protein;
PDBTitle: fadr, fatty acid responsive transcription factor from e.2 coli
92c5he9E_
not modelled 8.5 71
PDB header:protein binding
Chain: E: PDB Molecule:phage inhibitor protein;
PDBTitle: bacterial initiation protein in complex with phage inhibitor protein
93d1am7a_
not modelled 8.5 13
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Lambda lysozyme
94d1weka_
not modelled 8.5 13
Fold:MCP/YpsA-like
Superfamily:MCP/YpsA-like
Family:MoCo carrier protein-like
95c6rdi8_
not modelled 8.4 20
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1a,2 monomer-masked refinement
96c6rdr8_
not modelled 8.4 20
PDB header:proton transport
Chain: 8: PDB Molecule:mitochondrial atp synthase subunit asa8;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1d,2 monomer-masked refinement
97c2du9A_
not modelled 8.4 15
PDB header:transcription
Chain: A: PDB Molecule:predicted transcriptional regulators;
PDBTitle: crystal structure of the transcriptional factor from c.glutamicum
98d2fgca1
not modelled 8.3 15
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
99c3neuA_
not modelled 8.3 26
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin1836 protein;
PDBTitle: the crystal structure of a functionally-unknown protein lin1836 from2 listeria innocua clip11262

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