Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1315_(murA)_1470327_1471583
DateWed Jul 31 22:05:41 BST 2019
Unique Job ID662c6ef5fc59993d
SequenceVAERFVVTGG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.121 Y:51.328 Z:70.392
Model (left) based on template c3r38A_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1;
PDBTitle: 2.23 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-e
Confidence and coverage
Confidence:100.0% Coverage: 99%
413 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3r38A_
100.0 48
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1;
PDBTitle: 2.23 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase (mura) from listeria monocytogenes egd-e
2c5u4hB_
100.0 46
PDB header:lipid-binding protein
Chain: B: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: 1.05 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase from acinetobacter baumannii in covalently3 bound complex with (2r)-2-(phosphonooxy)propanoic acid.
3c5wi5C_
100.0 47
PDB header:transferase
Chain: C: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase 1;
PDBTitle: 2.0 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase from streptococcus pneumoniae in complex3 with uridine-diphosphate-2(n-acetylglucosaminyl) butyric acid, (2r)-4 2-(phosphonooxy)propanoic acid and magnesium.
4c5ujsB_
100.0 40
PDB header:hydrolase,oxidoreductase
Chain: B: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: 2.45 angstrom resolution crystal structure of udp-n-acetylglucosamine2 1-carboxyvinyltransferase from campylobacter jejuni.
5d1uaea_
100.0 45
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
6c5bq2C_
100.0 44
PDB header:transferase
Chain: C: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase2 (udp-n-acetylglucosamine enolpyruvyl transferase, ept) from3 pseudomonas aeruginosa
7d1ejda_
100.0 44
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
8c2yvwA_
100.0 40
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: crystal structure of udp-n-acetylglucosamine 1-carboxyvinyltransferase2 from aquifex aeolicus vf5
9c3zh3A_
100.0 39
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 1-carboxyvinyltransferase;
PDBTitle: crystal structure of s. pneumoniae d39 native mura1
10c4fqdA_
100.0 29
PDB header:transferase
Chain: A: PDB Molecule:niko protein;
PDBTitle: crystal structure of the enolpyruvyl transferase niko from2 streptomyces tendae
11c3rmtB_
100.0 23
PDB header:transferase
Chain: B: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase 1;
PDBTitle: crystal structure of putative 5-enolpyruvoylshikimate-3-phosphate2 synthase from bacillus halodurans c-125
12d1g6sa_
100.0 20
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
13c3roiA_
100.0 20
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: 2.20 angstrom resolution structure of 3-phosphoshikimate 1-2 carboxyvinyltransferase (aroa) from coxiella burnetii
14c5xwbB_
100.0 20
PDB header:transferase
Chain: B: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: crystal structure of 5-enolpyruvulshikimate-3-phosphate synthase from2 a psychrophilic bacterium, colwellia psychrerythraea
15c2o0zA_
100.0 22
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: mycobacterium tuberculosis epsp synthase in complex with product (eps)
16c5bufA_
100.0 22
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: 2.37 angstrom structure of epsp synthase from acinetobacter baumannii
17c2pqdA_
100.0 23
PDB header:transferase
Chain: A: PDB Molecule:3-phosphoshikimate 1-carboxyvinyltransferase;
PDBTitle: a100g cp4 epsps liganded with (r)-difluoromethyl tetrahedral reaction2 intermediate analog
18d1rf6a_
100.0 23
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
19d1p88a_
100.0 19
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:Enolpyruvate transferase, EPT
20d1qmha2
97.3 18
Fold:IF3-like
Superfamily:EPT/RTPC-like
Family:RNA 3'-terminal phosphate cyclase, RPTC
21c1qmiC_
not modelled 95.4 16
PDB header:ligase
Chain: C: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rna 3'-terminal phosphate cyclase, an2 ubiquitous enzyme with unusual topology
22c4o8jB_
not modelled 95.2 18
PDB header:ligase/rna
Chain: B: PDB Molecule:rna 3'-terminal phosphate cyclase;
PDBTitle: crystal structure of rtca, the rna 3'-terminal phosphate cyclase from2 pyrococcus horikoshii, in complex with racaaa3'phosphate and adenine.
23c3pqvD_
not modelled 85.4 12
PDB header:unknown function
Chain: D: PDB Molecule:rcl1 protein;
PDBTitle: cyclase homolog
24c3g0tA_
not modelled 56.6 19
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
25c4gtnA_
not modelled 47.7 15
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: structure of anthranilate phosphoribosyl transferase from2 acinetobacter baylyi
26c1o17A_
not modelled 45.3 8
PDB header:transferase
Chain: A: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyl-transferase (trpd)
27c4muoB_
not modelled 43.5 10
PDB header:dna binding protein
Chain: B: PDB Molecule:uncharacterized protein ybib;
PDBTitle: the trpd2 enzyme from e.coli: ybib
28c2hzfA_
not modelled 40.7 16
PDB header:electron transport, oxidoreductase
Chain: A: PDB Molecule:glutaredoxin-1;
PDBTitle: crystal structures of a poxviral glutaredoxin in the oxidized and2 reduced states show redox-correlated structural changes
29d1w2za3
not modelled 37.7 19
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
30c3gmgB_
not modelled 25.0 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873;
PDBTitle: crystal structure of an uncharacterized conserved protein from2 mycobacterium tuberculosis
31c2dsjA_
not modelled 21.1 15
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside (thymidine) phosphorylase;
PDBTitle: crystal structure of project id tt0128 from thermus thermophilus hb8
32c1v8gB_
not modelled 20.0 14
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure of anthranilate phosphoribosyltransferase2 (trpd) from thermus thermophilus hb8
33c5kinD_
not modelled 19.6 18
PDB header:lyase
Chain: D: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase alpha beta complex from2 streptococcus pneumoniae
34c4kjeA_
not modelled 17.9 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: atomic resolution structure of pfgrx1
35c3pnxF_
not modelled 16.5 0
PDB header:transferase
Chain: F: PDB Molecule:putative sulfurtransferase dsre;
PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution
36c4j8cA_
not modelled 14.8 23
PDB header:chaperone
Chain: A: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
37c4j8cB_
not modelled 14.8 23
PDB header:chaperone
Chain: B: PDB Molecule:hsc70-interacting protein;
PDBTitle: crystal structure of the dimerization domain of hsc70-interacting2 protein
38c2bpqB_
not modelled 14.1 14
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase (trpd) from2 mycobacterium tuberculosis (apo structure)
39d1v8za1
not modelled 14.1 16
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
40c4ga5H_
not modelled 13.7 13
PDB header:transferase
Chain: H: PDB Molecule:putative thymidine phosphorylase;
PDBTitle: crystal structure of amp phosphorylase c-terminal deletion mutant in2 the apo-form
41d2o8ra3
not modelled 13.3 11
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
42c5fqlA_
not modelled 13.2 14
PDB header:hydrolase
Chain: A: PDB Molecule:iduronate-2-sulfatase;
PDBTitle: insights into hunter syndrome from the structure of iduronate-2-2 sulfatase
43d1o17a2
not modelled 12.9 10
Fold:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Superfamily:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
Family:Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
44c2cb1A_
not modelled 12.8 22
PDB header:lyase
Chain: A: PDB Molecule:o-acetyl homoserine sulfhydrylase;
PDBTitle: crystal structure of o-actetyl homoserine sulfhydrylase2 from thermus thermophilus hb8,oah2.
45d1jjcb2
not modelled 12.4 24
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
46c3juxA_
not modelled 12.0 8
PDB header:protein transport
Chain: A: PDB Molecule:protein translocase subunit seca;
PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima
47c3h5qA_
not modelled 12.0 21
PDB header:transferase
Chain: A: PDB Molecule:pyrimidine-nucleoside phosphorylase;
PDBTitle: crystal structure of a putative pyrimidine-nucleoside phosphorylase2 from staphylococcus aureus
48c3nr6A_
not modelled 11.9 13
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:protease p14;
PDBTitle: crystal structure of xenotropic murine leukemia virus-related virus2 (xmrv) protease
49c4i2uA_
not modelled 10.9 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of the reduced glutaredoxin from chlorella2 sorokiniana t-89 in complex with glutathione
50d1jhba_
not modelled 10.7 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
51c3dinB_
not modelled 10.7 8
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:protein translocase subunit seca;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
52c2gjhA_
not modelled 9.7 29
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein;
PDBTitle: nmr structure of cfr (c-terminal fragment of2 computationally designed novel-topology protein top7)
53c5tchH_
not modelled 9.6 20
PDB header:lyase
Chain: H: PDB Molecule:tryptophan synthase beta chain;
PDBTitle: crystal structure of tryptophan synthase from m. tuberculosis -2 ligand-free form, trpa-g66v mutant
54c1khdD_
not modelled 9.5 11
PDB header:transferase
Chain: D: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: crystal structure analysis of the anthranilate2 phosphoribosyltransferase from erwinia carotovora at 1.9 resolution3 (current name, pectobacterium carotovorum)
55d1nh2a1
not modelled 9.1 18
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
56d2dy1a4
not modelled 9.1 24
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
57d1lxja_
not modelled 9.0 11
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
58d1cdwa1
not modelled 8.7 11
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
59c5nofB_
not modelled 8.2 21
PDB header:transferase
Chain: B: PDB Molecule:anthranilate phosphoribosyltransferase;
PDBTitle: anthranilate phosphoribosyltransferase from thermococcus kodakaraensis
60d1in0a2
not modelled 7.5 21
Fold:Ferredoxin-like
Superfamily:YajQ-like
Family:YajQ-like
61d1qnaa1
not modelled 7.3 11
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
62c2o8rA_
not modelled 7.1 11
PDB header:transferase
Chain: A: PDB Molecule:polyphosphate kinase;
PDBTitle: crystal structure of polyphosphate kinase from porphyromonas2 gingivalis
63c1nl3B_
not modelled 6.8 17
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase seca 1 subunit;
PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form
64d1x9za_
not modelled 6.8 27
Fold:DNA mismatch repair protein MutL
Superfamily:DNA mismatch repair protein MutL
Family:DNA mismatch repair protein MutL
65c4pwyA_
not modelled 6.7 13
PDB header:transferase
Chain: A: PDB Molecule:calmodulin-lysine n-methyltransferase;
PDBTitle: crystal structure of a calmodulin-lysine n-methyltransferase fragment
66d1yqha1
not modelled 6.7 23
Fold:Ferredoxin-like
Superfamily:MTH1187/YkoF-like
Family:MTH1187-like
67c3ndnC_
not modelled 6.6 22
PDB header:lyase
Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase;
PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate
68c2cxiA_
not modelled 6.5 15
PDB header:ligase
Chain: A: PDB Molecule:phenylalanyl-trna synthetase beta chain;
PDBTitle: crystal structure of an n-terminal fragment of the phenylalanyl-trna2 synthetase beta-subunit from pyrococcus horikoshii
69c6ic4H_
not modelled 6.4 23
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
70c2epiA_
not modelled 6.1 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0045 protein mj1052;
PDBTitle: crystal structure pf hypothetical protein mj1052 from2 methanocaldococcus jannascii (form 2)
71c5zvlB_
not modelled 5.9 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:glutaredoxin;
PDBTitle: crystal structure of wheat glutarredoxin
72c3mjsA_
not modelled 5.9 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:amphb;
PDBTitle: structure of a-type ketoreductases from modular polyketide synthase
73c3nbxX_
not modelled 5.9 12
PDB header:hydrolase
Chain: X: PDB Molecule:atpase rava;
PDBTitle: crystal structure of e. coli rava (regulatory atpase variant a) in2 complex with adp
74d1nh8a2
not modelled 5.7 14
Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
75c4gduB_
not modelled 5.6 18
PDB header:hydrolase
Chain: B: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of sulfate-bound human l-asparaginase protein
76c4uaqA_
not modelled 5.6 11
PDB header:protein transport
Chain: A: PDB Molecule:protein translocase subunit seca 2;
PDBTitle: crystal structure of the accessory translocation atpase, seca2, from2 mycobacterium tuberculosis
77d1ttea1
not modelled 5.5 24
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
78c4n0bA_
not modelled 5.3 15
PDB header:transcription activator
Chain: A: PDB Molecule:hth-type transcriptional regulatory protein gabr;
PDBTitle: crystal structure of bacillus subtilis gabr, an autorepressor and2 transcriptional activator of gabt
79c1otpA_
not modelled 5.2 16
PDB header:phosphorylase
Chain: A: PDB Molecule:thymidine phosphorylase;
PDBTitle: structural and theoretical studies suggest domain movement produces an2 active conformation of thymidine phosphorylase
80c3h8qB_
not modelled 5.2 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 3;
PDBTitle: crystal structure of glutaredoxin domain of human thioredoxin2 reductase 3
81c3s8iA_
not modelled 5.2 8
PDB header:hydrolase
Chain: A: PDB Molecule:protein ddi1 homolog 1;
PDBTitle: the retroviral-like protease (rvp) domain of human ddi1
82c2k6xA_
not modelled 5.2 17
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpod;
PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure
83c3ke2A_
not modelled 5.1 17
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yp_928783.1;
PDBTitle: crystal structure of a duf2131 family protein (sama_2911) from2 shewanella amazonensis sb2b at 2.50 a resolution

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Transmembrane helix prediction 

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