Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1317c_(alkA)_1477634_1479124
DateWed Jul 31 22:05:41 BST 2019
Unique Job ID68cddb1b629cfe3e
SequenceVHDDFERCYR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.974 Y:50.877 Z:40.352
Model (left) based on template c1mpgB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii;
PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli
Confidence and coverage
Confidence:100.0% Coverage: 56%
276 residues ( 56% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
477 residues ( 96%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1mpgB_
100.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna glycosylase ii;
PDBTitle: 3-methyladenine dna glycosylase ii from escherichia coli
2c2jhnB_
100.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:3-methyladenine dna-glycosylase;
PDBTitle: 3-methyladenine dna-glycosylase from archaeoglobus fulgidus
3c4ejyA_
100.0 23
PDB header:hydrolase/dna
Chain: A: PDB Molecule:3-methyladenine dna glycosylase;
PDBTitle: structure of mbogg1 in complex with high affinity dna ligand
4c1yqmA_
100.0 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: catalytically inactive human 8-oxoguanine glycosylase2 crosslinked to 7-deazaguanine containing dna
5c3f10A_
100.0 19
PDB header:hydrolase, lyase
Chain: A: PDB Molecule:8-oxoguanine-dna-glycosylase;
PDBTitle: crystal structure of clostridium acetobutylicum 8-oxoguanine dna2 glycosylase in complex with 8-oxoguanosine
6c1ko9A_
100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:8-oxoguanine dna glycosylase;
PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1
7d1mpga1
100.0 32
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
8c2yg8B_
100.0 31
PDB header:hydrolase
Chain: B: PDB Molecule:dna-3-methyladenine glycosidase ii, putative;
PDBTitle: structure of an unusual 3-methyladenine dna glycosylase ii (alka) from2 deinococcus radiodurans
9c1zgwA_
100.0 35
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
10c4b24A_
100.0 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:probable dna-3-methyladenine glycosylase 2;
PDBTitle: unprecedented sculpting of dna at abasic sites by dna glycoslase2 homolog mag2
11c2h56C_
100.0 24
PDB header:hydrolase
Chain: C: PDB Molecule:dna-3-methyladenine glycosidase;
PDBTitle: crystal structure of dna-3-methyladenine glycosidase (10174367) from2 bacillus halodurans at 2.55 a resolution
12c3s6iA_
100.0 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:dna-3-methyladenine glycosylase 1;
PDBTitle: schizosaccaromyces pombe 3-methyladenine dna glycosylase (mag1) in2 complex with abasic-dna.
13d2noha1
100.0 22
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:DNA repair glycosylase, 2 C-terminal domains
14d1eyfa_
100.0 38
Fold:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Superfamily:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Family:Ada DNA repair protein, N-terminal domain (N-Ada 10)
15c3fhgA_
99.9 15
PDB header:dna repair, hydrolase, lyase
Chain: A: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of sulfolobus solfataricus 8-oxoguanine dna2 glycosylase (ssogg)
16d1mpga2
99.9 29
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:DNA repair glycosylase, N-terminal domain
17c3gbgA_
99.9 15
PDB header:transcription regulator
Chain: A: PDB Molecule:tcp pilus virulence regulatory protein;
PDBTitle: crystal structure of toxt from vibrio cholerae o395
18c3kntC_
99.9 11
PDB header:hydrolase, lyase/dna
Chain: C: PDB Molecule:n-glycosylase/dna lyase;
PDBTitle: crystal structure of methanocaldococcus jannaschii 8-oxoguanine2 glycosylase/lyase in complex with 15mer dna containing 8-oxoguanine
19c4unfA_
99.9 18
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-1;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-1
20d1orna_
99.9 21
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
21c1d5yD_
not modelled 99.9 22
PDB header:transcription/dna
Chain: D: PDB Molecule:rob transcription factor;
PDBTitle: crystal structure of the e. coli rob transcription factor2 in complex with dna
22d1pu6a_
not modelled 99.9 18
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:3-Methyladenine DNA glycosylase III (MagIII)
23d2abka_
not modelled 99.9 17
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Endonuclease III
24c5chhA_
not modelled 99.9 22
PDB header:transcription
Chain: A: PDB Molecule:arac family transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator cdpr from pseudomonas2 aeruginosa
25c4uobA_
not modelled 99.9 28
PDB header:lyase
Chain: A: PDB Molecule:endonuclease iii-3;
PDBTitle: crystal structure of deinococcus radiodurans endonuclease iii-3
26c3oioA_
not modelled 99.9 27
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (arac-type dna-binding domain-
PDBTitle: crystal structure of transcriptional regulator (arac-type dna-binding2 domain-containing proteins) from chromobacterium violaceum
27c3w6vA_
not modelled 99.9 27
PDB header:transcription activator/dna
Chain: A: PDB Molecule:adpa;
PDBTitle: crystal structure of the dna-binding domain of adpa, the global2 transcriptional factor, in complex with a target dna
28c3n0uB_
not modelled 99.9 19
PDB header:hydrolase, lyase
Chain: B: PDB Molecule:probable n-glycosylase/dna lyase;
PDBTitle: crystal structure of tm1821, the 8-oxoguanine dna glycosylase of2 thermotoga maritima
29c1bl0A_
not modelled 99.9 17
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (multiple antibiotic resistance protein);
PDBTitle: multiple antibiotic resistance protein (mara)/dna complex
30c3oouA_
not modelled 99.9 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2118 protein;
PDBTitle: the structure of a protein with unkown function from listeria innocua
31c3mn2B_
not modelled 99.9 25
PDB header:transcription regulator
Chain: B: PDB Molecule:probable arac family transcriptional regulator;
PDBTitle: the crystal structure of a probable arac family transcriptional2 regulator from rhodopseudomonas palustris cga009
32d1keaa_
not modelled 99.9 17
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
33c3mklB_
not modelled 99.9 23
PDB header:transcription regulator
Chain: B: PDB Molecule:hth-type transcriptional regulator gadx;
PDBTitle: crystal structure of dna-binding transcriptional dual regulator from2 escherichia coli k-12
34c2k9sA_
not modelled 99.9 23
PDB header:transcription
Chain: A: PDB Molecule:arabinose operon regulatory protein;
PDBTitle: solution structure of dna binding domain of e. coli arac
35c4fe4C_
not modelled 99.9 23
PDB header:transcription
Chain: C: PDB Molecule:xylose operon regulatory protein;
PDBTitle: crystal structure of apo e. coli xylr
36d1ngna_
not modelled 99.9 18
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
37d1rrqa1
not modelled 99.8 19
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
38d1kg2a_
not modelled 99.8 24
Fold:DNA-glycosylase
Superfamily:DNA-glycosylase
Family:Mismatch glycosylase
39c3n5nX_
not modelled 99.8 18
PDB header:hydrolase
Chain: X: PDB Molecule:a/g-specific adenine dna glycosylase;
PDBTitle: crystal structure analysis of the catalytic domain and interdomain2 connector of human muty homologue
40c3lsgD_
not modelled 99.8 19
PDB header:transcription regulator
Chain: D: PDB Molecule:two-component response regulator yesn;
PDBTitle: the crystal structure of the c-terminal domain of the two-2 component response regulator yesn from fusobacterium3 nucleatum subsp. nucleatum atcc 25586
41c1rrqA_
not modelled 99.7 22
PDB header:hydrolase/dna
Chain: A: PDB Molecule:muty;
PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
42d1d5ya2
not modelled 99.3 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
43d1bl0a2
not modelled 99.3 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
44c5nlaA_
not modelled 99.2 22
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator transcription regulator
PDBTitle: crystal structure of the arac-like transcriptional activator cuxr
45d1d5ya1
not modelled 98.9 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
46d1bl0a1
not modelled 98.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:AraC type transcriptional activator
47d2noha2
not modelled 97.7 19
Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:DNA repair glycosylase, N-terminal domain
48d1sgma1
not modelled 94.2 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
49c5fglA_
not modelled 94.1 6
PDB header:apoptosis
Chain: A: PDB Molecule:nicr;
PDBTitle: co-crystal structure of nicr2_hsp
50c3cwrA_
not modelled 93.5 29
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator of tetr family2 (yp_425770.1) from rhodospirillum rubrum atcc 11170 at 1.50 a3 resolution
51c1sgmA_
not modelled 93.4 11
PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
52c2gfnA_
not modelled 93.3 12
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
53d1vdda_
not modelled 92.9 29
Fold:Recombination protein RecR
Superfamily:Recombination protein RecR
Family:Recombination protein RecR
54d1jt6a1
not modelled 92.8 9
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
55c3rd3B_
not modelled 92.8 11
PDB header:transcription
Chain: B: PDB Molecule:probable transcriptional regulator;
PDBTitle: structure of pseudomonas aeruginosa transcriptional regulator pa2196
56c2h5xA_
not modelled 92.8 30
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva;
PDBTitle: ruva from mycobacterium tuberculosis
57c2csdB_
not modelled 92.7 17
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
58c1vddC_
not modelled 92.6 29
PDB header:recombination
Chain: C: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombinational repair protein recr
59d2fbqa1
not modelled 92.5 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
60c5dxzA_
not modelled 92.4 14
PDB header:dna binding protein
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal of amtr from corynebacterium glutamicum
61c3on4D_
not modelled 92.4 10
PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
62c2ibdB_
not modelled 92.3 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
63c6gh5M_
not modelled 92.3 12
PDB header:transcription
Chain: M: PDB Molecule:rna polymerase sigma-54 factor,rna polymerase sigma-54
PDBTitle: cryo-em structure of bacterial rna polymerase-sigma54 holoenzyme2 transcription open complex
64c2dg7A_
not modelled 92.2 20
PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
65c2d6yA_
not modelled 92.1 7
PDB header:gene regulation
Chain: A: PDB Molecule:putative tetr family regulatory protein;
PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2)
66d2fq4a1
not modelled 91.8 8
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
67c5byhM_
not modelled 91.8 15
PDB header:transferase
Chain: M: PDB Molecule:rna polymerase sigma-54 factor;
PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex
68c2qtqB_
not modelled 91.7 13
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution
69c1u78A_
not modelled 91.6 9
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
70d2i10a1
not modelled 91.6 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
71c1jumB_
not modelled 91.5 9
PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca 5'region;
PDBTitle: crystal structure of the multidrug binding transcriptional repressor2 qacr bound to the natural drug berberine
72c1d8lA_
not modelled 91.5 34
PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region lacking2 domain iii
73c1ixrB_
not modelled 91.4 38
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
74c2f07A_
not modelled 91.3 13
PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
75c3f1bA_
not modelled 91.3 13
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
76c4ichA_
not modelled 91.3 22
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr family transcriptional regulator2 from saccharomonospora viridis dsm 43017
77d2g3ba1
not modelled 91.3 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
78c3vibD_
not modelled 91.2 13
PDB header:dna binding protein
Chain: D: PDB Molecule:mtrr;
PDBTitle: structural basis for multidrug recognition and antimicrobial2 resistance by mtrr, an efflux pump regulator from neisseria3 gonorrhoeae
79c2genA_
not modelled 91.2 11
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1
80c3bhqB_
not modelled 91.1 10
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution
81c5dajB_
not modelled 91.1 20
PDB header:transcription regulator
Chain: B: PDB Molecule:nald;
PDBTitle: crystal structure of nald, the secondary repressor of mexab-oprm2 multidrug efflux pump in pseudomonas aeruginosa
82c2raeA_
not modelled 91.1 19
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
83c1ixrA_
not modelled 91.1 37
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
84c3iuvA_
not modelled 91.0 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
85c3qbmA_
not modelled 91.0 16
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution
86c5d19A_
not modelled 91.0 15
PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0302, form ii
87c5k7fA_
not modelled 91.0 24
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of apo aibr
88c5zvqA_
not modelled 91.0 36
PDB header:recombination
Chain: A: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombination mediator protein recr
89c2wuiA_
not modelled 90.9 16
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
90c2yvhA_
not modelled 90.9 14
PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr
91c2y31A_
not modelled 90.8 19
PDB header:transcription
Chain: A: PDB Molecule:putative repressor simreg2;
PDBTitle: simocyclinone c4 bound form of tetr-like repressor simr
92d1ui5a1
not modelled 90.8 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
93c1vi0B_
not modelled 90.8 19
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
94d1pb6a1
not modelled 90.8 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
95d2fx0a1
not modelled 90.8 5
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
96c2of7A_
not modelled 90.8 17
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3
97c2bcuA_
not modelled 90.7 20
PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
98d2np5a1
not modelled 90.7 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
99c3dewA_
not modelled 90.7 20
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca.
100c6g8hC_
not modelled 90.7 14
PDB header:transcription
Chain: C: PDB Molecule:tetr/acrr family transcriptional regulator;
PDBTitle: flavonoid-responsive regulator frra in complex with naringenin
101c3vprA_
not modelled 90.7 21
PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a tetr family transcriptional regulator pfmr from2 thermus thermophilus hb8
102c2nx4A_
not modelled 90.7 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
103d2gena1
not modelled 90.7 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
104c5z2vB_
not modelled 90.6 29
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recr from pseudomonas aeruginosa pao1
105d2vkea1
not modelled 90.6 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
106c4gctA_
not modelled 90.6 14
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:nucleoid occlusion factor slma;
PDBTitle: structure of no factor protein-dna complex
107c2g3bB_
not modelled 90.5 16
PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp.
108c2hytA_
not modelled 90.5 14
PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution
109c2guhA_
not modelled 90.5 20
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
110c2i10A_
not modelled 90.5 15
PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1
111c2eh3A_
not modelled 90.5 5
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5
112c2fbqA_
not modelled 90.4 9
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006
113c3ppbB_
not modelled 90.4 12
PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
114c3g7rB_
not modelled 90.4 20
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional regulator2 from streptomyces coelicolor
115d2d6ya1
not modelled 90.4 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
116c3dcfB_
not modelled 90.4 14
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr family;
PDBTitle: crystal structure of transcriptional regulator of the tetr/acrr family2 (yp_290855.1) from thermobifida fusca yx-er1 at 2.50 a resolution
117d2o7ta1
not modelled 90.4 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
118c3b6aC_
not modelled 90.3 18
PDB header:transcription
Chain: C: PDB Molecule:actr protein;
PDBTitle: crystal structure of the streptomyces coelicolor tetr family protein2 actr in complex with actinorhodin
119c2fq4A_
not modelled 90.3 8
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus
120c2hxiA_
not modelled 90.3 26
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from streptomyces coelicolor a3(2)

Binding site prediction 

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