Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1340_(rph)_1506761_1507540
DateWed Jul 31 22:05:44 BST 2019
Unique Job ID0b722a498f47549a
SequenceVSKREDGRLD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.826 Y:43.257 Z:41.862
Model (left) based on template c3b4tC_
Top template information
PDB header:transferase
Chain: C: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340
Confidence and coverage
Confidence:100.0% Coverage: 93%
241 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3b4tC_
100.0 99
PDB header:transferase
Chain: C: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of mycobacterium tuberculosis rnase ph, the2 mycobacterium tuberculosis structural genomics consortium target3 rv1340
2c1udsA_
100.0 54
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the trna processing enzyme rnase ph r126a mutant2 from aquifex aeolicus
3c1r6mA_
100.0 56
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the trna processing enzyme rnase ph from2 pseudomonas aeruginosa in complex with phosphate
4c3dd6A_
100.0 52
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of rph, an exoribonuclease from bacillus anthracis2 at 1.7 a resolution
5c2c37L_
100.0 31
PDB header:hydrolase
Chain: L: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: rnase ph core of the archaeal exosome in complex with u82 rna
6c2pnzB_
100.0 23
PDB header:hydrolase/hydrolase
Chain: B: PDB Molecule:probable exosome complex exonuclease 2;
PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with udp and gmp
7c2po2A_
100.0 30
PDB header:hydrolase/hydrolase
Chain: A: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: crystal structure of the p. abyssi exosome rnase ph ring2 complexed with cdp
8c2wnrC_
100.0 21
PDB header:hydrolase
Chain: C: PDB Molecule:probable exosome complex exonuclease 2;
PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly
9c2nn6C_
100.0 20
PDB header:hydrolase/transferase
Chain: C: PDB Molecule:exosome complex exonuclease rrp43;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
10c2nn6A_
100.0 24
PDB header:hydrolase/transferase
Chain: A: PDB Molecule:polymyositis/scleroderma autoantigen 1;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
11c2nn6B_
100.0 25
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:exosome complex exonuclease rrp41;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
12c2wnrB_
100.0 33
PDB header:hydrolase
Chain: B: PDB Molecule:probable exosome complex exonuclease 1;
PDBTitle: the structure of methanothermobacter thermautotrophicus2 exosome core assembly
13c2ba1D_
100.0 31
PDB header:rna binding protein
Chain: D: PDB Molecule:archaeal exosome complex exonuclease rrp41;
PDBTitle: archaeal exosome core
14c6d6kB_
100.0 21
PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: structure of polyribonucleotide nucleotidyltransferase from2 acinetobacter baumannii
15c4aidC_
100.0 21
PDB header:transferase/peptide
Chain: C: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
16c6d6rF_
100.0 22
PDB header:hydrolase
Chain: F: PDB Molecule:exosome complex component mtr3;
PDBTitle: human nuclear exosome-mtr4 rna complex - composite map after focused2 reconstruction
17c2nn6E_
100.0 17
PDB header:hydrolase/transferase
Chain: E: PDB Molecule:exosome complex exonuclease rrp42;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
18c2br2G_
100.0 25
PDB header:hydrolase
Chain: G: PDB Molecule:exosome complex exonuclease 2;
PDBTitle: rnase ph core of the archaeal exosome
19c2ba0I_
100.0 22
PDB header:rna binding protein
Chain: I: PDB Molecule:archaeal exosome rna binding protein rrp42;
PDBTitle: archaeal exosome core
20c3hkmB_
100.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:os03g0854200 protein;
PDBTitle: crystal structure of rice(oryza sativa) rrp46
21c1oysA_
not modelled 100.0 56
PDB header:transferase
Chain: A: PDB Molecule:ribonuclease ph;
PDBTitle: crystal structure of the phosphorolytic exoribonuclease2 rnase ph from bacillus subtilis
22c5yjjE_
not modelled 100.0 25
PDB header:cytosolic protein
Chain: E: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of pnpase from staphylococcus epidermidis
23c2wp8B_
not modelled 100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:exosome complex component ski6;
PDBTitle: yeast rrp44 nuclease
24c5xexC_
not modelled 100.0 25
PDB header:transferase
Chain: C: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of s.aureus pnpase catalytic domain
25c4am3A_
not modelled 100.0 22
PDB header:transferase/rna
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rna
26c1e3hA_
not modelled 100.0 20
PDB header:polyribonucleotide transferase
Chain: A: PDB Molecule:guanosine pentaphosphate synthetase;
PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi enzyme
27c2wp8A_
not modelled 100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:exosome complex component rrp45;
PDBTitle: yeast rrp44 nuclease
28c3u1kB_
not modelled 100.0 24
PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase 1, mitochondrial;
PDBTitle: crystal structure of human pnpase
29c1e3pA_
not modelled 100.0 19
PDB header:polyribonucleotide transferase
Chain: A: PDB Molecule:guanosine pentaphosphate synthetase;
PDBTitle: tungstate derivative of streptomyces antibioticus pnpase/2 gpsi enzyme
30c3cdiA_
not modelled 100.0 23
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide phosphorylase;
PDBTitle: crystal structure of e. coli pnpase
31c4aimA_
not modelled 100.0 22
PDB header:transferase/peptide
Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: crystal structure of c. crescentus pnpase bound to rnase e2 recognition peptide
32c4ifdE_
not modelled 100.0 17
PDB header:hydrolase/rna
Chain: E: PDB Molecule:exosome complex component rrp42;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
33c4nbqB_
not modelled 100.0 20
PDB header:transferase
Chain: B: PDB Molecule:polyribonucleotide nucleotidyltransferase;
PDBTitle: structure of the polynucleotide phosphorylase (cbu_0852) from coxiella2 burnetii
34c2nn6D_
not modelled 100.0 22
PDB header:hydrolase/transferase
Chain: D: PDB Molecule:exosome complex exonuclease rrp46;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
35c3cdjA_
not modelled 100.0 25
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide phosphorylase;
PDBTitle: crystal structure of the e. coli kh/s1 domain truncated2 pnpase
36c2nn6F_
not modelled 100.0 23
PDB header:hydrolase/transferase
Chain: F: PDB Molecule:exosome component 6;
PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40
37c4ifdC_
not modelled 100.0 19
PDB header:hydrolase/rna
Chain: C: PDB Molecule:exosome complex component rrp43;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
38c4ifdD_
not modelled 100.0 20
PDB header:hydrolase/rna
Chain: D: PDB Molecule:exosome complex component rrp46;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
39c4ifdF_
not modelled 100.0 18
PDB header:hydrolase/rna
Chain: F: PDB Molecule:exosome complex component mtr3;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
40d1udsa1
not modelled 100.0 62
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
41d1r6la1
not modelled 100.0 61
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
42d2je6b1
not modelled 100.0 32
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
43d2ba0d1
not modelled 100.0 34
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
44d2nn6b1
not modelled 100.0 29
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
45d2ba0g1
not modelled 100.0 23
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
46d2nn6c1
not modelled 100.0 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
47d2je6a1
not modelled 100.0 26
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
48d1e3ha3
not modelled 100.0 17
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
49d2nn6e1
not modelled 100.0 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
50d2nn6a1
not modelled 100.0 27
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
51d1oysa1
not modelled 100.0 63
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
52c3krnB_
not modelled 100.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:protein c14a4.5, confirmed by transcript evidence;
PDBTitle: crystal structure of c. elegans cell-death-related nuclease 5(crn-5)
53d2nn6f1
not modelled 100.0 28
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
54d1e3ha2
not modelled 100.0 20
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
55d2nn6d1
not modelled 100.0 23
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Ribonuclease PH domain 1-like
56d2je6a2
not modelled 99.8 23
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
57d2nn6a2
not modelled 99.7 14
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
58d2nn6e2
not modelled 99.7 13
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
59d2ba0g2
not modelled 99.7 22
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
60d1oysa2
not modelled 99.7 49
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
61d2nn6c2
not modelled 99.7 19
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
62d2je6b2
not modelled 99.7 25
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
63d1udsa2
not modelled 99.7 38
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
64d1r6la2
not modelled 99.7 48
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
65d2br2b2
not modelled 99.7 25
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
66d2nn6d2
not modelled 99.7 19
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
67d2nn6b2
not modelled 99.6 17
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
68d2ba0d2
not modelled 99.6 25
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
69d2nn6f2
not modelled 99.3 17
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
70d1e3ha5
not modelled 98.4 20
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
71d1e3ha6
not modelled 96.2 21
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
72c4akvB_
not modelled 58.2 23
PDB header:transport protein
Chain: B: PDB Molecule:sorting nexin-33;
PDBTitle: crystal structure of human sorting nexin 33 (snx33)
73c3dyuB_
not modelled 40.9 23
PDB header:transport protein
Chain: B: PDB Molecule:sorting nexin-9;
PDBTitle: crystal structure of snx9px-bar (230-595), h32
74d1puga_
not modelled 38.0 7
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
75c2rajA_
not modelled 33.6 21
PDB header:structural protein
Chain: A: PDB Molecule:sorting nexin-9;
PDBTitle: so4 bound px-bar membrane remodeling unit of sorting nexin 9
76c4ds1C_
not modelled 21.8 15
PDB header:structural protein/transport protein
Chain: C: PDB Molecule:dynein light chain 1, cytoplasmic;
PDBTitle: the structure of a yeast dyn2-nup159 complex and the molecular basis2 for the dynein light chain - nuclear pore interaction
77d1pwka_
not modelled 21.5 15
Fold:DLC
Superfamily:DLC
Family:DLC
78d1cmia_
not modelled 20.9 12
Fold:DLC
Superfamily:DLC
Family:DLC
79d3e2ba1
not modelled 19.0 15
Fold:DLC
Superfamily:DLC
Family:DLC
80c5fx0A_
not modelled 16.3 10
PDB header:cell adhesion
Chain: A: PDB Molecule:calcium binding protein;
PDBTitle: fasciola hepatica calcium binding protein fhcabp2: structure of the2 dynein light chain-like domain. p6422 native.
81c5gw1G_
not modelled 14.2 31
PDB header:protein transport
Chain: G: PDB Molecule:sorting nexin-16;
PDBTitle: crystal structure of snx16 px-coiled coil in space group p212121
82d1j8ba_
not modelled 13.2 6
Fold:YbaB-like
Superfamily:YbaB-like
Family:YbaB-like
83c4gdxA_
not modelled 12.7 28
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase 1 heavy chain;
PDBTitle: crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
84c2v36A_
not modelled 12.2 28
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase large chain;
PDBTitle: crystal structure of gamma-glutamyl transferase from bacillus subtilis
85c2qm6C_
not modelled 12.1 28
PDB header:transferase
Chain: C: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase2 in complex with glutamate
86c2z8jA_
not modelled 11.7 28
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of escherichia coli gamma-glutamyltranspeptidase in2 complex with azaserine prepared in the dark
87c3p0cA_
not modelled 11.5 22
PDB header:signaling protein
Chain: A: PDB Molecule:nischarin;
PDBTitle: nischarin px-domain
88c3g9kD_
not modelled 11.3 44
PDB header:hydrolase
Chain: D: PDB Molecule:capsule biosynthesis protein capd;
PDBTitle: crystal structure of bacillus anthracis transpeptidase enzyme capd
89c5zjgC_
not modelled 11.2 28
PDB header:transferase
Chain: C: PDB Molecule:gamma-glutamyltransferase 1 threonine peptidase. merops
PDBTitle: gamma-glutamyltranspeptidase from pseudomonas nitroreducens complexed2 with gly-gly
90c4zqvA_
not modelled 10.5 19
PDB header:immune system
Chain: A: PDB Molecule:cdii immunity protein;
PDBTitle: cdii immunity protein from yersinia kristensenii
91c4y23A_
not modelled 9.5 39
PDB header:transferase
Chain: A: PDB Molecule:gamma glutamyl transpeptidase,gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of t399a precursor mutant protein of gamma-glutamyl2 transpeptidase from bacillus licheniformis
92c5xoxD_
not modelled 8.1 50
PDB header:transferase
Chain: D: PDB Molecule:trna(his) guanylyltransferase;
PDBTitle: crystal structure of trna(his) guanylyltranserase from saccharomyces2 cerevisiae
93d2nlza1
not modelled 8.0 39
Fold:Ntn hydrolase-like
Superfamily:N-terminal nucleophile aminohydrolases (Ntn hydrolases)
Family:Gamma-glutamyltranspeptidase-like
94c3otbB_
not modelled 7.9 50
PDB header:transferase
Chain: B: PDB Molecule:trna(his) guanylyltransferase;
PDBTitle: crystal structure of human trnahis guanylyltransferase (thg1) - dgtp2 complex
95c2e0wA_
not modelled 7.5 28
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: t391a precursor mutant protein of gamma-glutamyltranspeptidase from2 escherichia coli
96c4kgkB_
not modelled 7.5 40
PDB header:transferase
Chain: B: PDB Molecule:thg1-like uncharacterized protein;
PDBTitle: bacterial trna(his) guanylyltransferase (thg1)-like protein in complex2 with gtp
97c5axlB_
not modelled 7.3 40
PDB header:transferase
Chain: B: PDB Molecule:trna(his)-5'-guanylyltransferase (thg1) like protein;
PDBTitle: crystal structure of thg1 like protein (tlp) with gtp
98c4zquB_
not modelled 7.3 10
PDB header:toxin
Chain: B: PDB Molecule:cdii toxin;
PDBTitle: cdia-ct/cdii toxin and immunity complex from yersinia2 pseudotuberculosis
99c4olqD_
not modelled 7.2 15
PDB header:lyase
Chain: D: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of a putative enoyl-coa hydratase/isomerase family2 protein from hyphomonas neptunium

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