Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1341_(-)_1507579_1508193
DateWed Jul 31 22:05:44 BST 2019
Unique Job ID7ab29eaec18504b5
SequenceVALVTKLLVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.788 Y:53.152 Z:52.051
Model (left) based on template c3tquD_
Top template information
PDB header:hydrolase
Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase;
PDBTitle: structure of a ham1 protein from coxiella burnetii
Confidence and coverage
Confidence:100.0% Coverage: 95%
193 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3tquD_



100.0 43
PDB header:hydrolase
Chain: D: PDB Molecule:non-canonical purine ntp pyrophosphatase;
PDBTitle: structure of a ham1 protein from coxiella burnetii
2d1k7ka_



100.0 46
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
3c4bnqA_



100.0 37
PDB header:hydrolase
Chain: A: PDB Molecule:non-canonical purine ntp pyrophosphatase;
PDBTitle: the structure of the staphylococcus aureus ham1 protein
4d1vp2a_



100.0 34
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
5d2cara1



100.0 31
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
6d1v7ra_



100.0 29
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
7d1b78a_



100.0 28
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
8c4oo0B_



96.9 28
PDB header:hydrolase
Chain: B: PDB Molecule:maf-like protein bcal2394;
PDBTitle: crystal structure of maf-like protein bcej2315_23540 from burkholderia2 cenocepacia
9d2amha1



96.2 16
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:Maf-like
10d1ex2a_



95.4 17
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:Maf-like
11c4jhcA_



92.1 21
PDB header:cell cycle
Chain: A: PDB Molecule:maf-like protein ycef;
PDBTitle: crystal structure of the uncharacterized maf protein ycef from e. coli
12c4hebA_



91.8 18
PDB header:cell cycle
Chain: A: PDB Molecule:septum formation protein maf;
PDBTitle: the crystal structure of maf protein of bacillus subtilis
13c6mu0A_



90.1 22
PDB header:isomerase
Chain: A: PDB Molecule:probable ribose-5-phosphate isomerase b;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b from mycoplasma2 genitalium with bound ribulose-5-phosphate
14c2p5xB_



86.0 19
PDB header:cell cycle
Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein;
PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein
15d1u5wa1



85.4 15
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
16c4p0eB_



84.3 19
PDB header:unknown function
Chain: B: PDB Molecule:maf-like protein yhde;
PDBTitle: yhde e33a (p212121 space group)
17c4em8A_



83.4 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase b;
PDBTitle: the structure of ribose 5-phosphate isomerase b from anaplasma2 phagocytophilum
18c5d5pC_



78.6 16
PDB header:transferase
Chain: C: PDB Molecule:hcgb;
PDBTitle: hcgb from methanococcus maripaludis
19c6fxsA_



77.8 20
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase, putative;
PDBTitle: structure of trypanosoma brucei type b ribose 5-phosphate isomerase
20c6fxwA_



76.7 13
PDB header:isomerase
Chain: A: PDB Molecule:putative ribose 5-phosphate isomerase;
PDBTitle: structure of leishmania infantum type b ribose 5-phosphate isomerase
21d2vvpa1



not modelled 76.3 16
Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
22d1nn4a_



not modelled 67.7 12
Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
23c3m1pA_



not modelled 61.5 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
24c3k7pA_



not modelled 61.5 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
25c3c5yD_



not modelled 56.5 18
PDB header:isomerase
Chain: D: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
26d1o1xa_



not modelled 54.3 23
Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
27c3he8A_



not modelled 53.3 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
28c4lfmA_



not modelled 51.7 19
PDB header:isomerase
Chain: A: PDB Molecule:galactose-6-phosphate isomerase subunit a;
PDBTitle: crystal structure of d-galactose-6-phosphate isomerase in complex with2 d-psicose
29c3brcA_



not modelled 48.6 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein of unknown function;
PDBTitle: crystal structure of a conserved protein of unknown function from2 methanobacterium thermoautotrophicum
30d1zwya1



not modelled 47.4 19
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
31c4lfnD_



not modelled 43.3 15
PDB header:isomerase
Chain: D: PDB Molecule:galactose-6-phosphate isomerase subunit b;
PDBTitle: crystal structure of d-galactose-6-phosphate isomerase in complex with2 d-ribulose
32c3crqA_



not modelled 34.6 23
PDB header:transferase
Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate
PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
33c5t3yA_



not modelled 28.4 18
PDB header:signaling protein
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: solution structure of response regulator protein from burkholderia2 multivorans
34c2ppwA_



not modelled 28.0 22
PDB header:isomerase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
35c3s5pA_



not modelled 27.8 24
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
36c3qd5B_



not modelled 26.3 19
PDB header:isomerase
Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase;
PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
37c5zkeA_



not modelled 26.1 18
PDB header:ligase
Chain: A: PDB Molecule:aminoacyl trna synthetase complex-interacting
PDBTitle: crystal structure of n-terminal domain of plasmodium vivax p43 in2 space group p212121
38c5vveA_



not modelled 25.5 33
PDB header:isomerase
Chain: A: PDB Molecule:phosphoglycerate mutase;
PDBTitle: crystal structure of phosphoglycerate mutase from naegleria fowleri
39d1vbva1



not modelled 23.0 44
Fold:SH3-like barrel
Superfamily:YccV-like
Family:YccV-like
40c3a8tA_



not modelled 21.8 15
PDB header:transferase
Chain: A: PDB Molecule:adenylate isopentenyltransferase;
PDBTitle: plant adenylate isopentenyltransferase in complex with atp
41d1l8na1



not modelled 20.1 15
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
42d2nn6h3



not modelled 19.5 18
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
43d2pc6a1



not modelled 19.4 17
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
44d2fgca1



not modelled 19.3 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
45c4pzuF_



not modelled 18.9 17
PDB header:transferase
Chain: F: PDB Molecule:uncharacterized protein rv3404c/mt3512;
PDBTitle: crystal structure of a putative uncharacterize protein rv3404c and2 likely sugar n-formyltransferase from mycobacterium tuberculosis
46c1mqrA_



not modelled 17.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-d-glucuronidase;
PDBTitle: the crystal structure of alpha-d-glucuronidase (e386q) from bacillus2 stearothermophilus t-6
47d1u14a_



not modelled 15.9 19
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
48d1c01a_



not modelled 15.9 30
Fold:gamma-Crystallin-like
Superfamily:gamma-Crystallin-like
Family:Plant antimicrobial protein MIAMP1
49c2gx5B_



not modelled 15.3 9
PDB header:transcription
Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody;
PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody
50c1nm3B_



not modelled 15.1 24
PDB header:electron transport
Chain: B: PDB Molecule:protein hi0572;
PDBTitle: crystal structure of heamophilus influenza hybrid-prx5
51d2f1fa2



not modelled 14.4 9
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:IlvH-like
52c6ijj8_



not modelled 13.6 28
PDB header:membrane protein
Chain: 8: PDB Molecule:lhca8;
PDBTitle: photosystem i of chlamydomonas reinhardtii
53d2eyqa2



not modelled 13.6 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
54d1ixra2



not modelled 13.0 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA helicase RuvA subunit, N-terminal domain
55d3ehwa1



not modelled 12.6 60
Fold:beta-clip
Superfamily:dUTPase-like
Family:dUTPase-like
56c3rh0A_



not modelled 12.0 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:arsenate reductase;
PDBTitle: corynebacterium glutamicum mycothiol/mycoredoxin1-dependent arsenate2 reductase cg_arsc2
57c4an5F_



not modelled 11.5 19
PDB header:virus
Chain: F: PDB Molecule:coat protein;
PDBTitle: capsid structure and its stability at the late stages of bacteriophage2 spp1 assembly
58c3onoA_



not modelled 11.5 20
PDB header:isomerase
Chain: A: PDB Molecule:ribose/galactose isomerase;
PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
59c4hwgA_



not modelled 11.4 19
PDB header:isomerase
Chain: A: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: structure of udp-n-acetylglucosamine 2-epimerase from rickettsia2 bellii
60c4csqA_



not modelled 11.1 31
PDB header:structural protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr solution structure of pa3793 from pseudomonas aeruginosa
61c2auaB_



not modelled 10.7 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: structure of bc2332: a protein of unknown function from bacillus2 cereus
62c4w7gA_



not modelled 10.4 40
PDB header:motor protein
Chain: A: PDB Molecule:dynein light intermediate chain;
PDBTitle: crystal structure of the dynein light intermediate chain's conserved2 domain
63c2ymbB_



not modelled 9.9 27
PDB header:protein transport
Chain: B: PDB Molecule:mit domain-containing protein 1;
PDBTitle: structures of mitd1
64c2wmpB_



not modelled 9.6 33
PDB header:chaperone
Chain: B: PDB Molecule:papg protein;
PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin
65c3fozB_



not modelled 8.9 23
PDB header:transferase/rna
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: structure of e. coli isopentenyl-trna transferase in complex with e.2 coli trna(phe)
66c3vhjA_



not modelled 8.8 21
PDB header:membrane protein
Chain: A: PDB Molecule:bfpc;
PDBTitle: crystal structure of the cytoplasmic domain of bfpc
67c2wfbA_



not modelled 8.5 8
PDB header:biosynthetic protein
Chain: A: PDB Molecule:putative uncharacterized protein orp;
PDBTitle: high resolution structure of the apo form of the orange2 protein (orp) from desulfovibrio gigas
68c5wurB_



not modelled 8.3 21
PDB header:metal binding protein
Chain: B: PDB Molecule:ecf rna polymerase sigma factor sigw;
PDBTitle: crystal structure of sigw in complex with its anti-sigma rsiw, an2 oxdized form
69c1yd2A_



not modelled 8.2 27
PDB header:dna binding protein
Chain: A: PDB Molecule:uvrabc system protein c;
PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation
70c3exaD_



not modelled 8.1 17
PDB header:transferase
Chain: D: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: crystal structure of the full-length trna isopentenylpyrophosphate2 transferase (bh2366) from bacillus halodurans, northeast structural3 genomics consortium target bhr41.
71c5y5pB_



not modelled 8.0 70
PDB header:viral protein
Chain: B: PDB Molecule:wsv112;
PDBTitle: crystal structure of the dutpase of white spot syndrome virus in2 complex with du,ppi and mg2+
72d1rdua_



not modelled 8.0 8
Fold:Ribonuclease H-like motif
Superfamily:Nitrogenase accessory factor-like
Family:MTH1175-like
73c3d3qB_



not modelled 8.0 17
PDB header:transferase
Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate transferase;
PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis. northeast3 structural genomics consortium target ser100
74c3f4fB_



not modelled 7.9 60
PDB header:hydrolase
Chain: B: PDB Molecule:deoxyuridine 5'-triphosphate nucleotidohydrolase;
PDBTitle: crystal structure of dut1p, a dutpase from saccharomyces cerevisiae
75c3aerB_



not modelled 7.8 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: structure of the light-independent protochlorophyllide reductase2 catalyzing a key reduction for greening in the dark
76c4j05A_



not modelled 7.7 10
PDB header:transport protein
Chain: A: PDB Molecule:phosphate transporter;
PDBTitle: crystal structure of a eukaryotic phosphate transporter
77c6jo52_



not modelled 7.6 50
PDB header:photosynthesis
Chain: 2: PDB Molecule:chlorophyll a-b binding protein, chloroplastic;
PDBTitle: structure of the green algal photosystem i supercomplex with light-2 harvesting complex i
78c3h0dB_



not modelled 7.5 46
PDB header:transcription/dna
Chain: B: PDB Molecule:ctsr;
PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex
79c6ifhA_



not modelled 7.4 15
PDB header:transferase
Chain: A: PDB Molecule:sporulation initiation phosphotransferase f;
PDBTitle: unphosphorylated spo0f from paenisporosarcina sp. tg-14
80c4gmnA_



not modelled 7.4 26
PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural basis of rpl5 recognition by syo1
81c2ymbC_



not modelled 7.4 27
PDB header:protein transport
Chain: C: PDB Molecule:mit domain-containing protein 1;
PDBTitle: structures of mitd1
82c1y7xA_



not modelled 7.3 20
PDB header:structural protein, protein binding
Chain: A: PDB Molecule:major vault protein;
PDBTitle: solution structure of a two-repeat fragment of major vault2 protein
83c6f1yj_



not modelled 6.9 55
PDB header:motor protein
Chain: J: PDB Molecule:
PDBTitle: dynein light intermediate chain region of the dynein2 tail/dynactin/bicdr1 complex
84c6in7B_



not modelled 6.9 21
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase sigma-h factor;
PDBTitle: crystal structure of algu in complex with muca(cyto)
85c2jrlA_



not modelled 6.8 19
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
86c5mvrA_



not modelled 6.8 12
PDB header:transferase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsae;
PDBTitle: crystal structure of bacillus subtilus ydib
87c3so2A_



not modelled 6.7 50
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: chlorella dutpase
88d1muma_



not modelled 6.6 23
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like
89d1dq3a4



not modelled 6.5 10
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Intein endonuclease
90c5zx3F_



not modelled 6.5 17
PDB header:transcription
Chain: F: PDB Molecule:ecf rna polymerase sigma factor sigh;
PDBTitle: mycobacterium tuberculosis rna polymerase holoenzyme with ecf sigma2 factor sigma h
91c2gidP_



not modelled 6.4 36
PDB header:translation
Chain: P: PDB Molecule:mitochondrial rna-binding protein 2;
PDBTitle: crystal structures of trypanosoma bruciei mrp1/mrp2
92c1yd6A_



not modelled 6.4 36
PDB header:dna binding protein
Chain: A: PDB Molecule:uvrc;
PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax
93c3zf6A_



not modelled 6.4 50
PDB header:hydrolase
Chain: A: PDB Molecule:dutpase;
PDBTitle: phage dutpases control transfer of virulence genes by a proto-2 oncogenic g protein-like mechanism. (staphylococcus bacteriophage3 80alpha dutpase d81a d110c s168c mutant with dupnhpp).
94c6igz0_



not modelled 6.3 18
PDB header:plant protein
Chain: 0: PDB Molecule:lhca-j;
PDBTitle: structure of psi-lhci
95c4lxuB_



not modelled 6.1 22
PDB header:transferase
Chain: B: PDB Molecule:wlard, a sugar 3n-formyl transferase;
PDBTitle: dtdp-fuc3n and 5-n-formyl-thf
96c4p7dA_



not modelled 6.0 10
PDB header:toxin
Chain: A: PDB Molecule:antitoxin hicb3;
PDBTitle: antitoxin hicb3 crystal structure
97d1rw1a_



not modelled 5.9 16
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ArsC-like
98c3dlmA_



not modelled 5.8 18
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase setdb1;
PDBTitle: crystal structure of tudor domain of human histone-lysine n-2 methyltransferase setdb1
99c4etmB_



not modelled 5.7 9
PDB header:hydrolase
Chain: B: PDB Molecule:low molecular weight protein-tyrosine-phosphatase yfkj;
PDBTitle: crystal structure of yfkj from bacillus subtilis

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