Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1343c_(lprD)_1508549_1508929
DateWed Jul 31 22:05:44 BST 2019
Unique Job ID4e4fb0083d48312e
SequenceVSTTRRRRPA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.559 Y:29.440 Z:37.739
Model (left) based on template c2mc7A_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
Confidence and coverage
Confidence: 68.1% Coverage: 21%
27 residues ( 21% of your sequence) have been modelled with 68.1% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2mc7A_
68.1 41
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
2c1zzaA_
34.1 34
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
3d1ehkb2
18.1 18
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
4c6nbxG_
17.7 17
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase subunit j;
PDBTitle: t.elongatus ndh (data-set 2)
5c3o0rC_
16.5 20
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
6c4qrlA_
14.6 38
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a lipocalin-like protein (bacuni_01346) from2 bacteroides uniformis atcc 8492 at 1.79 a resolution
7c6humG_
14.2 15
PDB header:proton transport
Chain: G: PDB Molecule:nadh dehydrogenase subunit 6;
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
8c3j5pB_
13.3 15
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: structure of trpv1 ion channel determined by single particle electron2 cryo-microscopy
9c1q0vA_
12.2 13
PDB header:transport binding
Chain: A: PDB Molecule:hydrophilic protein; has cysteine rich putative
PDBTitle: solution structure of tandem uims of vps27
10c6hwhX_
12.0 16
PDB header:electron transport
Chain: X: PDB Molecule:cytochrome c oxidase polypeptide 4;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
11c2z2tF_
10.0 60
PDB header:viral protein/inhibitor
Chain: F: PDB Molecule:fusion inhibitor peptide sc34ek;
PDBTitle: crystal structure of the complex between gp41 fragment n362 and fusion inhibitor sc34ek
12c6nr2A_
9.9 13
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
13c6nr2B_
9.9 13
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
14c6nr2D_
9.9 13
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
15c6nr2C_
9.9 13
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
16c2lx0A_
9.8 21
PDB header:membrane protein
Chain: A: PDB Molecule:membrane fusion protein p14;
PDBTitle: arced helix (arch) nmr structure of the reovirus p14 fusion-associated2 small transmembrane (fast) protein transmembrane domain (tmd) in3 dodecyl phosphocholine (dpc) micelles
17c6humP_
8.7 30
PDB header:proton transport
Chain: P: PDB Molecule:proton-translocating nadh-quinone dehydrogenase subunit p
PDBTitle: structure of the photosynthetic complex i from thermosynechococcus2 elongatus
18c6hwhB_
8.3 24
PDB header:electron transport
Chain: B: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: structure of a functional obligate respiratory supercomplex from2 mycobacterium smegmatis
19c3oxqF_
7.9 20
PDB header:metal binding protein/transport protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: crystal structure of ca2+/cam-cav1.2 pre-iq/iq domain complex
20c4gn0D_
7.3 11
PDB header:signaling protein
Chain: D: PDB Molecule:hamp domain of af1503;
PDBTitle: de novo phasing of a hamp-complex using an improved arcimboldo method
21c5bypA_
not modelled 7.0 36
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein (bacegg_01585) from2 bacteroides eggerthii dsm 20697 at 2.60 a resolution
22d1eysh2
not modelled 6.8 26
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction centre subunit H, transmembrane region
Family:Photosystem II reaction centre subunit H, transmembrane region
23c2l64A_
not modelled 6.7 46
PDB header:hormone
Chain: A: PDB Molecule:glucagon-like peptide 2;
PDBTitle: nmr solution structure of glp-2 in dhpc micelles
24c2b2hA_
not modelled 6.7 23
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter;
PDBTitle: ammonium transporter amt-1 from a. fulgidus (as)
25c5ubkA_
not modelled 6.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:acyl-homoserine lactone acylase pvdq;
PDBTitle: inactive s1a/n269d-cppvdq mutant in complex with the pyoverdine2 precursor pvdiq reveals a specific binding pocket for the d-tyr of3 this substrate
26c6mplA_
not modelled 6.1 25
PDB header:membrane protein
Chain: A: PDB Molecule:matrix protein 2;
PDBTitle: racemic m2-tm i39a crystallized from racemic detergent
27c4kppA_
not modelled 6.1 10
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of h+/ca2+ exchanger cax
28c6omqA_
not modelled 5.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:ptmu3;
PDBTitle: crystal structure of ptmu3 complexed with ptm substrate
29c2voyB_
not modelled 5.9 29
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
30c6hu9u_
not modelled 5.8 26
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
31d3efza1
not modelled 5.8 33
Fold:alpha-alpha superhelix
Superfamily:14-3-3 protein
Family:14-3-3 protein
32c3efzA_
not modelled 5.8 33
PDB header:signaling protein
Chain: A: PDB Molecule:14-3-3 protein;
PDBTitle: crystal structure of a 14-3-3 protein from cryptosporidium parvum2 (cgd1_2980)
33c4heaJ_
not modelled 5.7 23
PDB header:oxidoreductase
Chain: J: PDB Molecule:nadh-quinone oxidoreductase subunit 10;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
34c2bcxB_
not modelled 5.3 22
PDB header:calcium binding protein
Chain: B: PDB Molecule:ryanodine receptor 1;
PDBTitle: crystal structure of calmodulin in complex with a ryanodine receptor2 peptide
35c6bn1B_
not modelled 5.3 29
PDB header:signaling protein
Chain: B: PDB Molecule:scaffold protein salvador;
PDBTitle: salvador hippo sarah domain complex
36c1eysH_
not modelled 5.1 26
PDB header:electron transport
Chain: H: PDB Molecule:photosynthetic reaction center;
PDBTitle: crystal structure of photosynthetic reaction center from a2 thermophilic bacterium, thermochromatium tepidum

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below