Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1351_(-)_1518237_1518566
DateWed Jul 31 22:05:45 BST 2019
Unique Job IDf81493cd761d5d01
SequenceMTPRSLPRYG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.840 Y:34.816 Z:20.470
Model (left) based on template d1q32a2
Top template information
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Tyrosyl-DNA phosphodiesterase TDP1
Confidence and coverage
Confidence: 22.6% Coverage: 28%
31 residues ( 28% of your sequence) have been modelled with 22.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1q32a2



22.6 26
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Tyrosyl-DNA phosphodiesterase TDP1
2c3lhnB_



11.0 50
PDB header:lipid binding protein
Chain: B: PDB Molecule:lipoprotein;
PDBTitle: crystal structure of putative lipoprotein (np_718719.1) from2 shewanella oneidensis at 1.42 a resolution
3c2elnA_



9.6 45
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 11th c2h2 zinc finger of human2 zinc finger protein 406
4c3sq3C_



7.9 26
PDB header:hydrolase
Chain: C: PDB Molecule:tyrosyl-dna phosphodiesterase 1;
PDBTitle: crystal structure analysis of the yeast tyrosyl-dna phosphodiesterase2 h182a mutant
5c4cmqB_



7.5 27
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
6c2mf8A_



7.1 50
PDB header:metal binding protein/dna
Chain: A: PDB Molecule:myelin transcription factor 1;
PDBTitle: haddock model of myt1 f4f5 - dna complex
7c5wwpA_



6.9 27
PDB header:hydrolase
Chain: A: PDB Molecule:orf1ab;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus2 helicase (mers-cov nsp13)
8c5vobC_



6.6 36
PDB header:viral protein/immune system
Chain: C: PDB Molecule:envelope glycoprotein ul128;
PDBTitle: crystal structure of hcmv pentamer in complex with neutralizing2 antibody 8i21
9c5cffE_



6.1 40
PDB header:transcription/rna binding protein
Chain: E: PDB Molecule:staufen;
PDBTitle: crystal structure of miranda/staufen dsrbd5 complex
10d1ebfa2



6.0 30
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Homoserine dehydrogenase-like
11c2y8sE_



5.8 50
PDB header:membrane protein
Chain: E: PDB Molecule:rhoptry neck protein 2;
PDBTitle: co-structure of an ama1 mutant (y230a) with a surface exposed region2 of ron2 from toxoplasma gondii
12c2z4hB_



5.7 35
PDB header:signaling protein activator
Chain: B: PDB Molecule:copper homeostasis protein cutf;
PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli
13c4i21C_



5.7 67
PDB header:transferase/transferase inhibitor
Chain: C: PDB Molecule:erbb receptor feedback inhibitor 1;
PDBTitle: crystal structure of l858r + t790m egfr kinase domain in complex with2 mig6 peptide
14c2y8tB_



5.7 50
PDB header:membrane protein
Chain: B: PDB Molecule:rhoptry neck protein 2;
PDBTitle: co-structure of ama1 with a surface exposed region of ron2 from2 toxoplasma gondii
15c3do5A_



5.5 35
PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: crystal structure of putative homoserine dehydrogenase (np_069768.1)2 from archaeoglobus fulgidus at 2.20 a resolution
16c4fwvA_



5.5 37
PDB header:hydrolase
Chain: A: PDB Molecule:ttc1975 peptidase;
PDBTitle: crystal structure of the n-terminal domain of the lon-like protease2 mtalonc
17d1bndb_



5.5 50
Fold:Cystine-knot cytokines
Superfamily:Cystine-knot cytokines
Family:Neurotrophin
18d2d8xa2



5.2 83
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite