Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1362c_(-)_1533954_1534616
DateWed Jul 31 22:05:46 BST 2019
Unique Job ID9ff3c25ba95d75cc
SequenceVTDDVRDVNT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.571 Y:31.755 Z:54.485
Model (left) based on template c5d9rA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
Confidence and coverage
Confidence: 97.4% Coverage: 41%
90 residues ( 41% of your sequence) have been modelled with 97.4% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5d9rA_



97.4 17
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
2c3a76B_



97.1 11
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
3c5cnlA_



97.1 9
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
4c5u9oD_



97.0 13
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
5d2rfra1



96.7 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
6d3d9ra1



96.5 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
7d3b8la1



96.5 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
8d2ux0a1



96.4 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
9d3stda_



96.4 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
10d1idpa_



96.4 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
11c3wz4F_



96.3 16
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
12c4i4kB_



96.2 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
13d1hkxa_



96.2 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
14d3ef8a1



95.7 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
15d3cu3a1



95.6 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
16c3robC_



95.5 8
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
17d2rgqa1



95.3 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
18c5ig4A_



95.1 8
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
19d2chca1



94.9 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
20c4ovmE_



94.9 17
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
21d2f86b1



not modelled 94.7 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
22c3soyA_



not modelled 94.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
23d3ebya1



not modelled 94.4 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
24c5ig5E_



not modelled 94.1 16
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
25c3h51A_



not modelled 93.9 26
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
26c6of9G_



not modelled 93.8 18
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
27c3wz3A_



not modelled 93.7 10
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
28c3gzrA_



not modelled 93.5 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
29c4gb5A_



not modelled 93.3 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
30d2b1xb1



not modelled 93.2 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
31c4nhfF_



not modelled 92.8 15
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
32c3k7cC_



not modelled 92.8 24
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
33c3hx8A_



not modelled 92.4 22
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
34c3bb9D_



not modelled 92.1 19
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
35c4lehA_



not modelled 91.9 11
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
36c5i97C_



not modelled 91.9 11
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
37c3f7sA_



not modelled 91.7 12
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
38c2gbxF_



not modelled 91.3 9
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
39c3ub1C_



not modelled 91.2 14
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
40d2cc3a1



not modelled 91.0 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
41d3ejva1



not modelled 90.9 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
42d3blza1



not modelled 87.0 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
43d3e99a1



not modelled 87.0 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
44c5ig0A_



not modelled 86.7 18
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
45c2bhmE_



not modelled 86.2 17
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
46d2bhma1



not modelled 84.7 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
47c4hzbE_



not modelled 84.0 36
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
48c2qguA_



not modelled 83.9 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
49c4meiA_



not modelled 83.7 7
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
50c3gwrA_



not modelled 83.5 10
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
51c5uwaB_



not modelled 81.5 13
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
52d3cnxa1



not modelled 78.3 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
53d2r4ia1



not modelled 76.3 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
54c2rsxA_



not modelled 75.2 32
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
55d3b7ca1



not modelled 73.4 19
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
56d3bb9a1



not modelled 68.3 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
57c3kspA_



not modelled 67.1 10
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
58c3fkaD_



not modelled 66.4 33
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
59d1vqqa1



not modelled 56.7 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
60c4fczB_



not modelled 56.1 11
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
61c4o3vA_



not modelled 54.6 9
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
62c3dukD_



not modelled 53.5 26
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
63c3fsdA_



not modelled 52.7 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
64d2owpa1



not modelled 46.8 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
65c1mwuA_



not modelled 46.2 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
66c6f0kA_



not modelled 39.7 13
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
67c3ke7A_



not modelled 38.2 24
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
68d1ulib_



not modelled 38.2 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
69c6bjuD_



not modelled 37.8 16
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
70c4ouqA_



not modelled 33.9 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
71c4orlA_



not modelled 33.4 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
72c3hzpA_



not modelled 31.9 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
73c2ml6A_



not modelled 28.0 35
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein zp_02069618.1 from bacteroides uniformis atcc2 8492
74c5ve9C_



not modelled 27.7 38
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
75c1zzaA_



not modelled 26.5 19
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
76c5up5A_



not modelled 26.1 36
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
77c4ce4i_



not modelled 25.8 10
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
78c1zeqX_



not modelled 24.7 10
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
79d1v5ra1



not modelled 23.8 33
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
80d1wqlb1



not modelled 21.5 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
81c3efyB_



not modelled 19.3 20
PDB header:cell cycle
Chain: B: PDB Molecule:cif (cell cycle inhibiting factor);
PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli
82d2gxfa1



not modelled 14.9 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
83c2n6uA_



not modelled 13.6 21
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
84c5ts4A_



not modelled 13.0 19
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
85c4r4gA_



not modelled 12.8 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
86c2l55A_



not modelled 11.8 15
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
87d2rcda1



not modelled 11.4 22
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
88c3gzxB_



not modelled 11.4 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
89c1xofB_



not modelled 10.4 27
PDB header:de novo protein
Chain: B: PDB Molecule:bbahett1;
PDBTitle: heterooligomeric beta beta alpha miniprotein
90c3qk9B_



not modelled 10.0 13
PDB header:protein transport
Chain: B: PDB Molecule:mitochondrial import inner membrane translocase subunit
PDBTitle: yeast tim44 c-terminal domain complexed with cymal-3
91c2kncA_



not modelled 9.2 11
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
92d2cw9a1



not modelled 8.7 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
93d1o7nb_



not modelled 8.4 4
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
94d2bmob1



not modelled 6.8 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
95c2k9yA_



not modelled 6.7 11
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
96c2k9yB_



not modelled 6.7 11
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
97c2w2rA_



not modelled 6.5 25
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein;
PDBTitle: structure of the vesicular stomatitis virus matrix protein
98c1sn9B_



not modelled 6.5 33
PDB header:de novo protein
Chain: B: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein
99c1sn9A_



not modelled 6.5 33
PDB header:de novo protein
Chain: A: PDB Molecule:tetrameric beta-beta-alpha mini-protein;
PDBTitle: an oligomeric domain-swapped beta-beta-alpha mini-protein

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below