Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1366A_(RVBD1366A)_1539186_1539446
DateWed Jul 31 22:05:47 BST 2019
Unique Job ID013e540ca768ed05
SequenceMRPSRQGEVG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:25.765 Y:29.045 Z:30.932
Model (left) based on template c1i32D_
Top template information
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
Confidence and coverage
Confidence: 53.9% Coverage: 40%
34 residues ( 40% of your sequence) have been modelled with 53.9% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1i32D_



53.9 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:glyceraldehyde 3-phosphate dehydrogenase;
PDBTitle: leishmania mexicana glyceraldehyde-3-phosphate2 dehydrogenase in complex with inhibitors
2c5zojE_



37.5 27
PDB header:dna binding protein
Chain: E: PDB Molecule:inner nuclear membrane protein man1;
PDBTitle: crystal structure of human smad2-man1 complex
3c3s6eB_



37.1 27
PDB header:rna binding protein
Chain: B: PDB Molecule:rna-binding protein 39;
PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution
4d1k3ta1



30.0 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
5d1i32a1



29.3 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
6d2b4ro1



23.4 33
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
7c3dlbA_



22.3 25
PDB header:nucleic acid binding protein/dna
Chain: A: PDB Molecule:argonaute;
PDBTitle: crystal structure of the guide-strand-containing argonaute2 protein silencing complex
8d1ggaa1



19.4 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
9d1azpa_



17.2 22
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
10c3ho1A_



17.0 27
PDB header:nucleic acid binding protein/dna/rna
Chain: A: PDB Molecule:argonaute;
PDBTitle: crystal structure of t. thermophilus argonaute n546 mutant protein2 complexed with dna guide strand and 12-nt rna target strand
11c3aqjQ_



14.6 29
PDB header:metal binding protein
Chain: Q: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of a c-terminal domain of the bacteriophage p2 tail2 spike protein, gpv
12c4yh8A_



13.7 30
PDB header:splicing
Chain: A: PDB Molecule:splicing factor u2af 23 kda subunit;
PDBTitle: structure of yeast u2af complex
13d1u8fo1



12.9 27
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
14d1j0xo1



12.6 27
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
15c3cieC_



12.0 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:glyceraldehyde-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glyceraldehyde 3-phosphate2 dehydrogenase from cryptosporidium parvum
16d1od6a_



9.8 19
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
17d3gpdg1



9.8 27
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
18d1o0pa_



9.0 13
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
19c4k29A_



8.8 18
PDB header:isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 xanthobacter autotrophicus py2
20d1yvua2



8.7 19
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:PIWI domain
21d1w9ha1



not modelled 8.7 14
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:PIWI domain
22c3sllC_



not modelled 7.9 16
PDB header:isomerase
Chain: C: PDB Molecule:probable enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
23d1fjca_



not modelled 7.0 22
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
24c4nekD_



not modelled 6.9 13
PDB header:isomerase
Chain: D: PDB Molecule:enoyl-coa hydratase/carnithine racemase;
PDBTitle: putative enoyl-coa hydratase/carnithine racemase from magnetospirillum2 magneticum amb-1
25c3j60I_



not modelled 6.7 47
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8e;
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
26c2q3vB_



not modelled 6.5 31
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:protein at2g34160;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at2g34160
27c4quvB_



not modelled 6.3 63
PDB header:oxidoreductase, membrane protein
Chain: B: PDB Molecule:delta(14)-sterol reductase;
PDBTitle: structure of an integral membrane delta(14)-sterol reductase
28c1yz7A_



not modelled 6.2 15
PDB header:translation
Chain: A: PDB Molecule:probable translation initiation factor 2 alpha
PDBTitle: crystal structure of a c-terminal segment of the alpha2 subunit of aif2 from pyrococcus abyssi
29c4mouA_



not modelled 6.1 17
PDB header:isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase family member,2 nysgrc target 028282
30c2vkzH_



not modelled 6.0 13
PDB header:transferase
Chain: H: PDB Molecule:fatty acid synthase subunit beta;
PDBTitle: structure of the cerulenin-inhibited fungal fatty acid synthase type i2 multienzyme complex
31d1vm0a_



not modelled 5.9 26
Fold:IF3-like
Superfamily:AlbA-like
Family:Hypothetical protein At2g34160
32d1h6da1



not modelled 5.9 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
33d2pkqo1



not modelled 5.7 20
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
34c3rrvC_



not modelled 5.7 12
PDB header:isomerase
Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium paratuberculosis
35c3h02F_



not modelled 5.7 21
PDB header:lyase
Chain: F: PDB Molecule:naphthoate synthase;
PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium.
36c2uvaI_



not modelled 5.6 20
PDB header:transferase
Chain: I: PDB Molecule:fatty acid synthase beta subunits;
PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
37d1jmta_



not modelled 5.5 19
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Splicing factor U2AF subunits
38c4i4zE_



not modelled 5.2 23
PDB header:lyase
Chain: E: PDB Molecule:naphthoate synthase;
PDBTitle: synechocystis sp. pcc 6803 1,4-dihydroxy-2-naphthoyl-coenzyme a2 synthase (menb) in complex with salicylyl-coa

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