Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1371_(-)_1543365_1544834
DateWed Jul 31 22:05:47 BST 2019
Unique Job ID54a5e7edf17f3c28
SequenceVTNDLPDVRE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.039 Y:56.996 Z:44.673
Model (left) based on template c4zyoA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase;
PDBTitle: crystal structure of human integral membrane stearoyl-coa desaturase2 with substrate
Confidence and coverage
Confidence: 99.9% Coverage: 54%
265 residues ( 54% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
358 residues ( 73%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4zyoA_
99.9 12
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase;
PDBTitle: crystal structure of human integral membrane stearoyl-coa desaturase2 with substrate
2c1fcbA_
99.8 28
PDB header:oxidoreductase (ch-oh(d)-cytochrome(a))
Chain: A: PDB Molecule:flavocytochrome b2;
PDBTitle: molecular structure of flavocytochrome b2 at 2.4 angstroms resolution
3d1iccc_
99.8 25
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
4d1kbia2
99.8 32
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
5d1aqaa_
99.8 19
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
6d1cyoa_
99.7 16
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
7d1hkoa_
99.7 15
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
8c3lf5B_
99.7 28
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome b5 reductase 4;
PDBTitle: structure of human nadh cytochrome b5 oxidoreductase (ncb5or) b52 domain to 1.25a resolution
9d1m2ia_
99.7 18
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
10c4b8nC_
99.7 29
PDB header:electron transport
Chain: C: PDB Molecule:cytochrome b5-host origin;
PDBTitle: cytochrome b5 of ostreococcus tauri virus 2
11d1do9a_
99.7 15
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
12c2ibjA_
99.7 17
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome b5;
PDBTitle: structure of house fly cytochrome b5
13d1soxa2
99.7 20
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
14d1lj0a_
99.7 24
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
15d1euea_
99.7 25
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
16d1axxa_
99.7 18
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
17c2keoA_
99.7 12
PDB header:ligase
Chain: A: PDB Molecule:probable e3 ubiquitin-protein ligase herc2;
PDBTitle: solution nmr structure of human protein hs00059, cytochrome-b5-like2 domain of the herc2 e3 ligase. northeast structural genomics3 consortium (nesg) target ht98a
18d1mj4a_
99.7 21
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
19d1cxya_
99.7 33
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Cytochrome b5
20c1x3xA_
99.6 25
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome b5;
PDBTitle: crystal structure of cytochrome b5 from ascaris suum
21c1soxB_
not modelled 99.5 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:sulfite oxidase;
PDBTitle: sulfite oxidase from chicken liver
22c4ymkA_
not modelled 99.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:acyl-coa desaturase 1;
PDBTitle: crystal structure of stearoyl-coenzyme a desaturase 1
23c6nzxA_
not modelled 99.3 22
PDB header:metal binding protein
Chain: A: PDB Molecule:cytochrome b5;
PDBTitle: hadesarchaea ynp_n21 cytochrome b5 domain protein (kuo41884.1)
24c4x8yA_
not modelled 98.6 15
PDB header:membrane protein
Chain: A: PDB Molecule:membrane-associated progesterone receptor component 1;
PDBTitle: crystal structure of human pgrmc1 cytochrome b5-like domain
25d1j03a_
not modelled 98.5 18
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Steroid-binding domain
26d1t0ga_
not modelled 98.4 18
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Steroid-binding domain
27c3frrA_
not modelled 87.3 17
PDB header:protein binding
Chain: A: PDB Molecule:uncharacterized protein kiaa0174;
PDBTitle: structure of human ist1(ntd) - (residues 1-189)(p21)
28d1ho8a_
not modelled 61.5 14
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Regulatory subunit H of the V-type ATPase
29c3ggzC_
not modelled 47.1 13
PDB header:protein transport, endocytosis
Chain: C: PDB Molecule:increased sodium tolerance protein 1;
PDBTitle: crystal structure of s.cerevisiae ist1 n-terminal domain in complex2 with did2 mim motif
30d1bdsa_
not modelled 27.7 44
Fold:Defensin-like
Superfamily:Defensin-like
Family:Defensin
31c1bdsA_
not modelled 27.7 44
PDB header:anti-hypertensive, anti-viral protein
Chain: A: PDB Molecule:bds-i;
PDBTitle: determination of the three-dimensional solution structure of the2 antihypertensive and antiviral protein bds-i from the sea anemone3 anemonia sulcata. a study using nuclear magnetic resonance and hybrid4 distance geometry-dynamical simulated annealing
32c2lufA_
not modelled 24.2 25
PDB header:de novo protein
Chain: A: PDB Molecule:retro trp-cage peptide;
PDBTitle: retro trp-cage peptide
33c5mtwD_
not modelled 24.0 12
PDB header:chaperone
Chain: D: PDB Molecule:secb-like chaperone rv1957;
PDBTitle: mycobacterium tuberculosis rv1957 secb-like chaperone in complex with2 a chad peptide from rv1956 higa1 antitoxin
34d1wpla_
not modelled 23.6 28
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
35c1is7F_
not modelled 22.6 28
PDB header:hydrolase/protein binding
Chain: F: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex
36c1wm9D_
not modelled 21.6 22
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8
37d1wura1
not modelled 21.6 22
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
38d1a8ra_
not modelled 20.6 20
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
39c3utmC_
not modelled 19.9 57
PDB header:transferase/signaling protein
Chain: C: PDB Molecule:axin-1;
PDBTitle: crystal structure of a mouse tankyrase-axin complex
40c4uqfB_
not modelled 19.3 26
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase 1;
PDBTitle: crystal structure of listeria monocytogenes gtp cyclohydrolase i
41c5eybB_
not modelled 18.4 20
PDB header:dna binding protein/dna
Chain: B: PDB Molecule:dna-binding protein reb1;
PDBTitle: x-ray structure of reb1-ter complex
42c5zojE_
not modelled 18.0 10
PDB header:dna binding protein
Chain: E: PDB Molecule:inner nuclear membrane protein man1;
PDBTitle: crystal structure of human smad2-man1 complex
43c3ieiD_
not modelled 17.7 12
PDB header:transferase
Chain: D: PDB Molecule:leucine carboxyl methyltransferase 1;
PDBTitle: crystal structure of human leucine carboxylmethyltransferase-1 in2 complex with s-adenosyl homocysteine
44c2ckcA_
not modelled 17.5 55
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 7;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
45d2ckca1
not modelled 17.5 55
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
46d2v0ea1
not modelled 16.1 55
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
47c3mntA_
not modelled 15.7 12
PDB header:transferase
Chain: A: PDB Molecule:leucine carboxyl methyltransferase 1;
PDBTitle: crystal structure of human leucine carboxyl methyltransferase 1
48d2ckaa1
not modelled 15.7 36
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
49c2ckaA_
not modelled 15.7 36
PDB header:hydrolase
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 8;
PDBTitle: solution structures of the brk domains of the human chromo2 helicase domain 7 and 8, reveals structural similarity3 with gyf domain suggesting a role in protein interaction
50c6edjD_
not modelled 15.6 100
PDB header:virus like particle
Chain: D: PDB Molecule:external core antigen;
PDBTitle: cryo-em structure of woodchuck hepatitis virus capsid
51c3bzjA_
not modelled 15.1 27
PDB header:hydrolase
Chain: A: PDB Molecule:uv endonuclease;
PDBTitle: uvde k229l
52c3dfdA_
not modelled 14.7 31
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein yqbn;
PDBTitle: crystal structure of the protein yqbn. northeast structural2 genomics consortium target sr445.
53c2daeA_
not modelled 14.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa0733 protein;
PDBTitle: solution structure of the n-terminal cue domain in the2 human mitogen-activated protein kinase kinase kinase 73 interacting protein 2 (map3k7ip2)
54c3qi7A_
not modelled 13.3 14
PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution
55d2dl6a1
not modelled 13.2 36
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
56d1jmta_
not modelled 12.6 29
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Splicing factor U2AF subunits
57c1lj2C_
not modelled 12.2 40
PDB header:viral protein/ translation
Chain: C: PDB Molecule:eukaryotic protein synthesis initiation factor;
PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization
58c2j4dA_
not modelled 11.4 26
PDB header:dna binding protein
Chain: A: PDB Molecule:cryptochrome dash;
PDBTitle: cryptochrome 3 from arabidopsis thaliana
59c1qqp4_
not modelled 11.0 20
PDB header:virus
Chain: 4: PDB Molecule:protein (genome polyprotein);
PDBTitle: foot-and-mouth disease virus/ oligosaccharide receptor complex.
60c1lj2D_
not modelled 10.7 40
PDB header:viral protein/ translation
Chain: D: PDB Molecule:eukaryotic protein synthesis initiation factor;
PDBTitle: recognition of eif4g by rotavirus nsp3 reveals a basis for2 mrna circularization
61d1njra_
not modelled 10.2 33
Fold:Macro domain-like
Superfamily:Macro domain-like
Family:Macro domain
62c6hxiD_
not modelled 10.0 15
PDB header:lyase
Chain: D: PDB Molecule:succinyl-coa ligase (adp-forming) subunit alpha;
PDBTitle: structure of atp citrate lyase from methanothrix soehngenii in complex2 with citrate and coenzyme a
63c4d0uD_
not modelled 9.7 29
PDB header:viral protein
Chain: D: PDB Molecule:fiber protein;
PDBTitle: crystal structure of the fiber head domain of the atadenovirus snake2 adenovirus 1, selenomethionine-derivative
64d1ii2a2
not modelled 9.2 25
Fold:PEP carboxykinase N-terminal domain
Superfamily:PEP carboxykinase N-terminal domain
Family:PEP carboxykinase N-terminal domain
65c5zt3A_
not modelled 9.1 21
PDB header:plant protein
Chain: A: PDB Molecule:wa352;
PDBTitle: crystal structure of wa352 from oryza sativa
66d2dita1
not modelled 8.9 31
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
67d1ouoa_
not modelled 8.5 29
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Endonuclease I
68c5bs1C_
not modelled 7.7 24
PDB header:chaperone
Chain: C: PDB Molecule:crrbcx-iia;
PDBTitle: crystal structure of rbcx-iia from chlamydomonas reinhardtii
69c2inuC_
not modelled 7.4 40
PDB header:lyase
Chain: C: PDB Molecule:insulin fructotransferase;
PDBTitle: crystal structure of insulin fructotransferase in the absence of2 substrate
70c3isrB_
not modelled 7.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:transglutaminase-like enzymes, putative cysteine protease;
PDBTitle: the crystal structure of a putative cysteine protease from cytophaga2 hutchinsonii to 1.9a
71c5zlaD_
not modelled 6.7 45
PDB header:hydrolase
Chain: D: PDB Molecule:dfa-iiiase c387a mutant;
PDBTitle: crystal structure of mutant c387a of dfa-iiiase from arthrobacter2 chlorophenolicus a6 in complex with dfa-iii
72c3kojA_
not modelled 6.6 27
PDB header:dna binding protein
Chain: A: PDB Molecule:uncharacterized protein ycf41;
PDBTitle: crystal structure of the ssb domain of q5n255_synp6 protein from2 synechococcus sp. northeast structural genomics consortium target3 snr59a.
73c3rbnB_
not modelled 6.5 25
PDB header:protein binding
Chain: B: PDB Molecule:dna mismatch repair protein mlh1;
PDBTitle: crystal structure of mutl protein homolog 1 isoform 1 [homo sapiens]
74d1owla2
not modelled 6.5 20
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
75c4fmoA_
not modelled 6.3 26
PDB header:hydrolase
Chain: A: PDB Molecule:dna mismatch repair protein mlh1;
PDBTitle: structure of the c-terminal domain of the saccharomyces cerevisiae2 mutl alpha (mlh1/pms1) heterodimer bound to a fragment of exo1
76c3s2xB_
not modelled 6.0 25
PDB header:transferase
Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha;
PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain
77d1bi5a2
not modelled 6.0 38
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
78d1u0ua2
not modelled 6.0 31
Fold:Thiolase-like
Superfamily:Thiolase-like
Family:Chalcone synthase-like
79c3l8dA_
not modelled 5.9 0
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: crystal structure of methyltransferase from bacillus thuringiensis
80c3s6eB_
not modelled 5.6 39
PDB header:rna binding protein
Chain: B: PDB Molecule:rna-binding protein 39;
PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution
81c2l21A_
not modelled 5.6 32
PDB header:transport protein
Chain: A: PDB Molecule:cation-independent mannose-6-phosphate receptor;
PDBTitle: chicken igf2r domain 11
82d2v0fa1
not modelled 5.6 36
Fold:GYF/BRK domain-like
Superfamily:BRK domain-like
Family:BRK domain-like
83c1pbyA_
not modelled 5.6 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:quinohemoprotein amine dehydrogenase 60 kda subunit;
PDBTitle: structure of the phenylhydrazine adduct of the quinohemoprotein amine2 dehydrogenase from paracoccus denitrificans at 1.7 a resolution
84d1s6la2
not modelled 5.4 42
Fold:NosL/MerB-like
Superfamily:NosL/MerB-like
Family:MerB-like
85d2j07a2
not modelled 5.3 23
Fold:Cryptochrome/photolyase, N-terminal domain
Superfamily:Cryptochrome/photolyase, N-terminal domain
Family:Cryptochrome/photolyase, N-terminal domain
86c5jnoA_
not modelled 5.3 15
PDB header:cell cycle
Chain: A: PDB Molecule:ben domain-containing protein 3;
PDBTitle: crystal structure of the bd1-ntpr complex from bend3 and pich
87d1cwva5
not modelled 5.3 22
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Invasin/intimin cell-adhesion fragment, C-terminal domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below