Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1374c_(-)_1547078_1547536
DateWed Jul 31 22:05:48 BST 2019
Unique Job IDe08e8c9e6ac93ee4
SequenceVVTSVADENV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.063 Y:14.137 Z:16.264
Model (left) based on template c2nv4A_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0066 protein af_0241;
PDBTitle: crystal structure of upf0066 protein af0241 in complex with2 s-adenosylmethionine. northeast structural genomics3 consortium target gr27
Confidence and coverage
Confidence: 65.1% Coverage: 7%
10 residues ( 7% of your sequence) have been modelled with 65.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2nv4A_



65.1 90
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0066 protein af_0241;
PDBTitle: crystal structure of upf0066 protein af0241 in complex with2 s-adenosylmethionine. northeast structural genomics3 consortium target gr27
2d1xqba_



62.9 60
Fold:YaeB-like
Superfamily:YaeB-like
Family:YaeB-like
3c3okxA_



58.5 90
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:yaeb-like protein rpa0152;
PDBTitle: crystal structure of yaeb-like protein from rhodopseudomonas palustris
4c5sydA_



16.2 50
PDB header:oxidoreductase
Chain: A: PDB Molecule:azurin, chimeric construct;
PDBTitle: circularly permutated azurin (cpaz) based on p. aeruginosa azurin2 sequence
5c2zihC_



14.5 17
PDB header:protein transport
Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 74;
PDBTitle: crystal structure of yeast vps74
6c2mmbA_



14.4 67
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein yp_001712342.1 from acinetobacter2 baumannii
7c2btwA_



13.5 71
PDB header:transferase
Chain: A: PDB Molecule:alr0975 protein;
PDBTitle: crystal structure of alr0975
8d2bu3a1



13.5 71
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Phytochelatin synthase
9c2ziiA_



12.1 17
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 74;
PDBTitle: crystal structure of yeast vps74-n-term truncation variant
10c5xonW_



10.6 30
PDB header:transcription/rna
Chain: W: PDB Molecule:protein that forms a complex with spt4p;
PDBTitle: rna polymerase ii elongation complex bound with spt4/5 and tfiis
11c6dgaA_



10.0 67
PDB header:unknown function
Chain: A: PDB Molecule:rpfr;
PDBTitle: cronobacter turicensis rpfr quorum-sensing receptor rpff interaction2 domain
12c2qahA_



9.7 31
PDB header:hydrolase
Chain: A: PDB Molecule:2-pyrone-4,6-dicarboxylic acid hydrolase;
PDBTitle: crystal structure of the 2-pyrone-4,6-dicarboxylic acid hydrolase from2 sphingomonas paucimobilis
13c2n07X_



9.5 41
PDB header:toxin
Chain: X: PDB Molecule:alpha-conotoxin vc1a;
PDBTitle: design of a highly stable disulfide-deleted mutant of analgesic cyclic2 alpha-conotoxin vc1.1
14c2hd0D_



9.4 27
PDB header:hydrolase
Chain: D: PDB Molecule:protease ns2-3 (p23);
PDBTitle: structure of the catalytic domain of hepatitis c virus ns2
15d2b5id2



8.6 44
Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
16c4u6uC_



8.4 23
PDB header:transport protein
Chain: C: PDB Molecule:cog7;
PDBTitle: crystal structure of the cog5-cog7 complex from kluyveromyces lactis
17d1ovle_



8.3 67
Fold:Nuclear receptor ligand-binding domain
Superfamily:Nuclear receptor ligand-binding domain
Family:Nuclear receptor ligand-binding domain
18c6ir9W_



8.3 30
PDB header:transcription/rna/dna
Chain: W: PDB Molecule:spt5;
PDBTitle: rna polymerase ii elongation complex bound with elf1 and spt4/5,2 stalled at shl(-1) of the nucleosome
19c6buzN_



8.2 50
PDB header:structural protein/dna
Chain: N: PDB Molecule:maltose-binding periplasmic protein, centromere protein n
PDBTitle: cryo-em structure of cenp-a nucleosome in complex with kinetochore2 protein cenp-n
20c4ph8B_



7.3 100
PDB header:cell adhesion
Chain: B: PDB Molecule:aggregative adherence fimbrial subunit agga;
PDBTitle: crystal structure of agga, the major subunit of aggregative adherence2 fimbriae type i (aaf/i) from the escherichia coli o4h104
21c6cgxA_



not modelled 6.8 47
PDB header:toxin
Chain: A: PDB Molecule:alpha-conotoxin vc1a;
PDBTitle: backbone cyclised conotoxin vc1.1 mutant - d11a, e14a
22c5l6nI_



not modelled 6.7 75
PDB header:hydrolase
Chain: I: PDB Molecule:thrombin inhibitor madanin 1;
PDBTitle: disulfated madanin-thrombin complex
23d1tcaa_



not modelled 6.3 36
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
24d2i15a1



not modelled 6.2 32
Fold:MG296-like
Superfamily:MG296-like
Family:MG296-like
25c6re80_



not modelled 5.7 56
PDB header:proton transport
Chain: 0: PDB Molecule:asa-10: polytomella f-atp synthase associated subunit 10;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 2d,2 composite map
26c3rj1P_



not modelled 5.6 14
PDB header:transcription
Chain: P: PDB Molecule:mediator of rna polymerase ii transcription subunit 17;
PDBTitle: architecture of the mediator head module
27c3ez0D_



not modelled 5.4 54
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:uncharacterized protein with ferritin-like fold;
PDBTitle: crystal structure of protein of unknown function with ferritin-like2 fold (yp_832262.1) from arthrobacter sp. fb24 at 2.33 a resolution
28d1b8xa1



not modelled 5.3 25
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain

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