Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1375_(-)_1547838_1549157
DateWed Jul 31 22:05:48 BST 2019
Unique Job ID173a41c2b041028d
SequenceMTGRRLARFP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:46.894 Y:60.671 Z:54.007
Model (left) based on template c6ci7A_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:ycao;
PDBTitle: the structure of ycao from methanopyrus kandleri bound with amppcp and2 mg2+
Confidence and coverage
Confidence:100.0% Coverage: 80%
351 residues ( 80% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ci7A_
100.0 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:ycao;
PDBTitle: the structure of ycao from methanopyrus kandleri bound with amppcp and2 mg2+
2c4bs9A_
100.0 23
PDB header:isomerase
Chain: A: PDB Molecule:trud;
PDBTitle: structure of the heterocyclase trud
3c4q86B_
100.0 19
PDB header:protein binding
Chain: B: PDB Molecule:ribosomal protein s12 methylthiotransferase accessory
PDBTitle: ycao with amp bound
4c6grgD_
100.0 13
PDB header:biosynthetic protein
Chain: D: PDB Molecule:microcin b17-processing protein mcbd;
PDBTitle: e. coli microcin synthetase mcbbcd complex with pro-mccb17, adp and2 phosphate bound
5c2mfzA_
58.4 42
PDB header:structural protein
Chain: A: PDB Molecule:minor ampullate spidroin;
PDBTitle: nmr structure of c-terminal domain from a. ventricosus minor ampullate2 spidroin (misp)
6c1oheA_
49.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:cdc14b2 phosphatase;
PDBTitle: structure of cdc14b phosphatase with a peptide ligand
7d1sr9a3
34.7 26
Fold:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Superfamily:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
Family:2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
8d1lcka1
27.7 33
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
9c5b16A_
25.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease 3,drosha,ribonuclease 3,drosha,ribonuclease 3;
PDBTitle: x-ray structure of drosha in complex with the c-terminal tail of2 dgcr8.
10d1phta_
25.7 35
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
11d1zxoa1
23.5 32
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
12c1cg2D_
22.3 12
PDB header:metallocarboxypeptidase
Chain: D: PDB Molecule:carboxypeptidase g2;
PDBTitle: carboxypeptidase g2
13c2o55A_
22.1 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative glycerophosphodiester phosphodiesterase;
PDBTitle: crystal structure of a putative glycerophosphodiester2 phosphodiesterase from galdieria sulphuraria
14d1fmka1
21.8 38
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
15d1shfa_
21.1 38
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
16c4afzC_
20.6 38
PDB header:hydrolase/de novo protein
Chain: C: PDB Molecule:fynomer;
PDBTitle: human chymase - fynomer complex
17d1jo8a_
20.6 24
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
18c3cqtA_
19.5 33
PDB header:transferase
Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase fyn;
PDBTitle: n53i v55l mutant of fyn sh3 domain
19c4jhdF_
19.4 57
PDB header:structural protein/protein binding
Chain: F: PDB Molecule:protein cordon-bleu;
PDBTitle: crystal structure of an actin dimer in complex with the actin2 nucleator cordon-bleu
20c6edfA_
18.9 38
PDB header:transferase
Chain: A: PDB Molecule:fyn;
PDBTitle: fragment of a tyrosine-protein kinase
21c2e5kA_
not modelled 17.8 30
PDB header:protein binding
Chain: A: PDB Molecule:suppressor of t-cell receptor signaling 1;
PDBTitle: solution structure of sh3 domain in suppressor of t-cell2 receptor signaling 1
22d1k1za_
not modelled 17.6 24
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
23d1efna_
not modelled 17.3 38
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
24c2j06B_
not modelled 17.2 24
PDB header:signal transduction
Chain: B: PDB Molecule:ras gtpase-activating protein 1;
PDBTitle: crystal structure of the rasgap sh3 domain at 1.8 angstrom2 resolution
25c2fpeB_
not modelled 17.2 29
PDB header:signaling protein
Chain: B: PDB Molecule:c-jun-amino-terminal kinase interacting protein 1;
PDBTitle: conserved dimerization of the ib1 src-homology 3 domain
26d1gcqc_
not modelled 16.8 25
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
27c2qyxB_
not modelled 16.1 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein mj0159;
PDBTitle: crystal structure of uncharacterized protein mj0159 from2 methanocaldococcus jannaschii
28c4yxaA_
not modelled 16.0 58
PDB header:protein transport
Chain: A: PDB Molecule:surface presentation of antigens protein spao;
PDBTitle: complex of spao(spoa1,2 semet) and orgb(apar)::t4lysozyme fusion2 protein
29c4wyqB_
not modelled 15.8 14
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:risc-loading complex subunit tarbp2;
PDBTitle: crystal structure of the dicer-trbp interface
30c2lj0A_
not modelled 15.1 29
PDB header:signaling protein
Chain: A: PDB Molecule:sorbin and sh3 domain-containing protein 1;
PDBTitle: the third sh3 domain of r85fl
31c2kt1A_
not modelled 15.1 35
PDB header:protein binding
Chain: A: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit
PDBTitle: solution nmr structure of the sh3 domain from the p85beta2 subunit of phosphatidylinositol 3-kinase from h.sapiens,3 northeast structural genomics consortium target hr5531e
32d1y57a1
not modelled 14.8 38
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
33c2ct3A_
not modelled 14.3 24
PDB header:signaling protein
Chain: A: PDB Molecule:vinexin;
PDBTitle: solution structure of the sh3 domain of the vinexin protein
34d2uube2
not modelled 14.2 20
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
35c2pokB_
not modelled 13.8 14
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase, m20/m25/m40 family;
PDBTitle: crystal structure of a m20 family metallo peptidase from streptococcus2 pneumoniae
36c4rksB_
not modelled 13.7 11
PDB header:transferase
Chain: B: PDB Molecule:putative uncharacterized protein ta1305;
PDBTitle: crystal structure of mevalonate-3-kinase from thermoplasma acidophilum2 (mevalonate bound)
37d1ojra_
not modelled 13.4 16
Fold:AraD/HMP-PK domain-like
Superfamily:AraD/HMP-PK domain-like
Family:AraD-like aldolase/epimerase
38c1z9zA_
not modelled 13.4 24
PDB header:structural protein
Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1;
PDBTitle: crystal structure of yeast sla1 sh3 domain 3
39d1uhza_
not modelled 13.2 15
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Double-stranded RNA-binding domain (dsRBD)
40d1f20a2
not modelled 13.0 13
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:NADPH-cytochrome p450 reductase-like
41c5vaqC_
not modelled 12.4 37
PDB header:signaling protein
Chain: C: PDB Molecule:fibroblast growth factor 21;
PDBTitle: crystal structure of beta-klotho in complex with fgf21ct
42c6gjeA_
not modelled 12.4 26
PDB header:protein transport
Chain: A: PDB Molecule:protein amnionless;
PDBTitle: structure of the amnionless(20-357)-cubilin(36-135) complex
43d1ewqa4
not modelled 12.2 25
Fold:MutS N-terminal domain-like
Superfamily:DNA repair protein MutS, domain I
Family:DNA repair protein MutS, domain I
44c2cucA_
not modelled 12.1 40
PDB header:signaling protein
Chain: A: PDB Molecule:sh3 domain containing ring finger 2;
PDBTitle: solution structure of the sh3 domain of the mouse2 hypothetical protein sh3rf2
45d1zbsa2
not modelled 12.0 24
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
46c4g6zA_
not modelled 12.0 28
PDB header:ligase
Chain: A: PDB Molecule:glutamate-trna ligase;
PDBTitle: crystal structure of a glutamyl-trna synthetase glurs from2 burkholderia thailandensis bound to l-glutamate
47c1yn8E_
not modelled 11.8 29
PDB header:unknown function
Chain: E: PDB Molecule:nap1-binding protein 2;
PDBTitle: sh3 domain of yeast nbp2
48c2zogA_
not modelled 11.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:cytosolic non-specific dipeptidase;
PDBTitle: crystal structure of mouse carnosinase cn2 complexed with zn and2 bestatin
49d1pkpa2
not modelled 11.0 21
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
50c5d6aA_
not modelled 11.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:predicted atpase of the abc class;
PDBTitle: 2.7 angstrom crystal structure of abc transporter atpase from vibrio2 vulnificus in complex with adenylyl-imidodiphosphate (amp-pnp)
51c3rojD_
not modelled 10.6 21
PDB header:hydrolase
Chain: D: PDB Molecule:d-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-
PDBTitle: d-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase2 of synechocystis sp. pcc 6803
52c4yiyA_
not modelled 10.6 31
PDB header:rna binding protein
Chain: A: PDB Molecule:krna editing a6 specific protein;
PDBTitle: structure of mrb1590 bound to amp-pnp
53d1qs0b1
not modelled 10.5 24
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:Branched-chain alpha-keto acid dehydrogenase Pyr module
54c2lcsA_
not modelled 10.2 29
PDB header:transferase, signaling protein
Chain: A: PDB Molecule:nap1-binding protein 2;
PDBTitle: yeast nbp2p sh3 domain in complex with a peptide from ste20p
55c2zkqe_
not modelled 10.1 17
PDB header:ribosomal protein/rna
Chain: E: PDB Molecule:rna expansion segment es6 part ii;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
56c2cudA_
not modelled 9.9 38
PDB header:signaling protein
Chain: A: PDB Molecule:src-like-adapter;
PDBTitle: solution structure of the sh3 domain of the human src-like2 adopter protein (slap)
57c5kdmD_
not modelled 9.6 14
PDB header:chaperone / dna binding protein
Chain: D: PDB Molecule:major tegument protein;
PDBTitle: crystal structure of ebv tegument protein bnrf1 in complex with2 histone chaperone daxx and histones h3.3-h4
58d1tzza1
not modelled 9.3 11
Fold:TIM beta/alpha-barrel
Superfamily:Enolase C-terminal domain-like
Family:D-glucarate dehydratase-like
59c6c4sA_
not modelled 9.0 38
PDB header:transferase, peptide binding protein
Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase src,csrc sh3 domain;
PDBTitle: human csrc sh3 domain in complex with choline kinase fragment 60-69
60c6c4sB_
not modelled 9.0 38
PDB header:transferase, peptide binding protein
Chain: B: PDB Molecule:proto-oncogene tyrosine-protein kinase src,csrc sh3 domain;
PDBTitle: human csrc sh3 domain in complex with choline kinase fragment 60-69
61c2eczA_
not modelled 9.0 29
PDB header:signaling protein
Chain: A: PDB Molecule:sorbin and sh3 domain-containing protein 1;
PDBTitle: solution structure of the sh3 domain of sorbin and sh32 domain-containing protein 1
62c1x6bA_
not modelled 8.9 24
PDB header:signaling protein
Chain: A: PDB Molecule:rho guanine exchange factor (gef) 16;
PDBTitle: solution structures of the sh3 domain of human rho guanine2 exchange factor (gef) 16
63c4dkkA_
not modelled 8.9 15
PDB header:rna binding protein
Chain: A: PDB Molecule:double-stranded rna-binding protein staufen homolog 1;
PDBTitle: the x-ray crystal structure of the human stau1 ssm-'rbd'5 domain-2 swapped dimer
64c3trjC_
not modelled 8.7 17
PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
65d1ohea2
not modelled 8.4 16
Fold:(Phosphotyrosine protein) phosphatases II
Superfamily:(Phosphotyrosine protein) phosphatases II
Family:Dual specificity phosphatase-like
66c1x27F_
not modelled 8.3 33
PDB header:signaling protein
Chain: F: PDB Molecule:proto-oncogene tyrosine-protein kinase lck;
PDBTitle: crystal structure of lck sh2-sh3 with sh2 binding site of2 p130cas
67c6qssA_
not modelled 8.3 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:malate dehydrogenase;
PDBTitle: crystal structure of ignicoccus islandicus malate dehydrogenase co-2 crystallized with 10 mm tb-xo4
68c2xzmE_
not modelled 8.2 17
PDB header:ribosome
Chain: E: PDB Molecule:ribosomal protein s5 containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
69d2qale2
not modelled 8.2 17
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:Ribosomal S5 protein, N-terminal domain
70c1s1hE_
not modelled 8.0 14
PDB header:ribosome
Chain: E: PDB Molecule:40s ribosomal protein s2;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
71c2yt6A_
not modelled 8.0 33
PDB header:cell cycle
Chain: A: PDB Molecule:adult male urinary bladder cdna, riken full-
PDBTitle: solution structure of the sh3_1 domain of yamaguchi sarcoma2 viral (v-yes) oncogene homolog 1
72c3bc1F_
not modelled 7.9 30
PDB header:signaling protein/transport protein
Chain: F: PDB Molecule:synaptotagmin-like protein 2;
PDBTitle: crystal structure of the complex rab27a-slp2a
73c3rnjA_
not modelled 7.5 25
PDB header:protein binding
Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein
PDBTitle: crystal structure of the sh3 domain from irsp53 (baiap2)
74c4x8wE_
not modelled 7.3 32
PDB header:gene regulation
Chain: E: PDB Molecule:loquacious, isoform b;
PDBTitle: dsrbd3 of loquacious
75c3j20F_
not modelled 7.1 17
PDB header:ribosome
Chain: F: PDB Molecule:30s ribosomal protein s5p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
76d1sp8a2
not modelled 7.1 27
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Extradiol dioxygenases
77c4arpB_
not modelled 7.0 20
PDB header:hydrolase
Chain: B: PDB Molecule:pesticin;
PDBTitle: structure of the inactive pesticin e178a mutant
78c5cffE_
not modelled 7.0 14
PDB header:transcription/rna binding protein
Chain: E: PDB Molecule:staufen;
PDBTitle: crystal structure of miranda/staufen dsrbd5 complex
79d2piaa2
not modelled 6.9 9
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Aromatic dioxygenase reductase-like
80c3zeyP_
not modelled 6.9 14
PDB header:ribosome
Chain: P: PDB Molecule:40s ribosomal protein s2, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
81c3pm7A_
not modelled 6.9 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of ef_3132 protein from enterococcus faecalis at the2 resolution 2a, northeast structural genomics consortium target efr184
82c2l3aA_
not modelled 6.8 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of homodimer protein sp_0782 (7-79) from2 streptococcus pneumoniae northeast structural genomics consortium3 target spr104 .
83c5uz9D_
not modelled 6.5 19
PDB header:immune system/rna
Chain: D: PDB Molecule:crispr-associated protein csy3;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
84c6ayyB_
not modelled 6.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:fructose-1,6-bisphosphatase class 2;
PDBTitle: crystal structure of apo fructose-1,6-bisphosphatase from2 mycobacterium tuberculosis
85c1sp8A_
not modelled 6.5 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxyphenylpyruvate dioxygenase;
PDBTitle: 4-hydroxyphenylpyruvate dioxygenase
86c3j6vE_
not modelled 6.5 11
PDB header:ribosome
Chain: E: PDB Molecule:28s ribosomal protein s5, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
87d2iima1
not modelled 6.5 33
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
88d1j5ya2
not modelled 6.5 30
Fold:HPr-like
Superfamily:Putative transcriptional regulator TM1602, C-terminal domain
Family:Putative transcriptional regulator TM1602, C-terminal domain
89c1x6gA_
not modelled 6.4 14
PDB header:signaling protein
Chain: A: PDB Molecule:megakaryocyte-associated tyrosine-protein kinase;
PDBTitle: solution structures of the sh3 domain of human2 megakaryocyte-associated tyrosine-protein kinase.
90c2khxA_
not modelled 6.4 30
PDB header:gene regulation,nuclear protein
Chain: A: PDB Molecule:ribonuclease 3;
PDBTitle: drosha double-stranded rna binding motif
91d1arka_
not modelled 6.2 38
Fold:SH3-like barrel
Superfamily:SH3-domain
Family:SH3-domain
92d1o98a1
not modelled 6.1 19
Fold:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Superfamily:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
93c3pesA_
not modelled 6.1 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein gp49;
PDBTitle: crystal structure of uncharacterized protein from pseudomonas phage2 yua
94c5o5jE_
not modelled 6.1 17
PDB header:ribosome
Chain: E: PDB Molecule:30s ribosomal protein s5;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
95c3qp9C_
not modelled 6.0 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:type i polyketide synthase pikaii;
PDBTitle: the structure of a c2-type ketoreductase from a modular polyketide2 synthase
96c2rf0D_
not modelled 5.9 30
PDB header:transferase
Chain: D: PDB Molecule:mitogen-activated protein kinase kinase kinase 10;
PDBTitle: crystal structure of human mixed lineage kinase map3k10 sh3 domain
97d2hz5a1
not modelled 5.5 42
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
98c2p76H_
not modelled 5.4 21
PDB header:hydrolase
Chain: H: PDB Molecule:glycerophosphoryl diester phosphodiesterase;
PDBTitle: crystal structure of a glycerophosphodiester phosphodiesterase from2 staphylococcus aureus
99d1c4ka1
not modelled 5.3 17
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:Ornithine decarboxylase N-terminal "wing" domain

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below