Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD1376_(-)_1549154_1550647
DateWed Jul 31 22:05:48 BST 2019
Unique Job IDae72d8ba7c74e18b
SequenceMTACGRIVVT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.205 Y:34.903 Z:31.021
Model (left) based on template c2n03A_
Top template information
PDB header:structural protein
Chain: A: PDB Molecule:plectin;
PDBTitle: solution nmr structure plectin repeat domain 6 (4403-4606) of plectin2 from homo sapiens, northeast structural genomics consortium (nesg)3 target hr6354e
Confidence and coverage
Confidence: 76.2% Coverage: 12%
62 residues ( 12% of your sequence) have been modelled with 76.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2n03A_
76.2 19
PDB header:structural protein
Chain: A: PDB Molecule:plectin;
PDBTitle: solution nmr structure plectin repeat domain 6 (4403-4606) of plectin2 from homo sapiens, northeast structural genomics consortium (nesg)3 target hr6354e
2d1lm5a_
74.9 19
Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Plakin repeat
Family:Plakin repeat
3c3ff4A_
64.5 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of uncharacterized protein chu_1412
4c4qmdB_
60.0 18
PDB header:cell adhesion
Chain: B: PDB Molecule:envoplakin;
PDBTitle: crystal structure of human envoplakin plakin repeat domain
5c3mogA_
58.0 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable 3-hydroxybutyryl-coa dehydrogenase;
PDBTitle: crystal structure of 3-hydroxybutyryl-coa dehydrogenase from2 escherichia coli k12 substr. mg1655
6c5dzzA_
55.4 19
PDB header:structural protein
Chain: A: PDB Molecule:desmoplakin;
PDBTitle: structural characterization of intermediate filaments binding domain2 of desmoplakin
7c4kueA_
53.7 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxybutyryl-coa dehydrogenase;
PDBTitle: crystal structure of 3-hydroxybutylryl-coa dehydrogenase from2 clostridium butyricum
8d1lm7a_
50.1 24
Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Plakin repeat
Family:Plakin repeat
9c3btuD_
48.3 10
PDB header:transcription
Chain: D: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal structure of the super-repressor mutant of gal80p2 from saccharomyces cerevisiae; gal80(s2) [e351k]
10c4ex8A_
42.1 21
PDB header:ligase
Chain: A: PDB Molecule:alna;
PDBTitle: crystal structure of the prealnumycin c-glycosynthase alna
11c2duwA_
34.0 14
PDB header:ligand binding protein
Chain: A: PDB Molecule:putative coa-binding protein;
PDBTitle: solution structure of putative coa-binding protein of2 klebsiella pneumoniae
12c3k96B_
33.3 23
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+];
PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii
13c2obnA_
32.5 19
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution
14c3lyeA_
32.3 16
PDB header:hydrolase
Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase;
PDBTitle: crystal structure of oxaloacetate acetylhydrolase
15c3v5nA_
31.3 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti
16c4qmkB_
30.4 32
PDB header:toxin
Chain: B: PDB Molecule:type iii secretion system effector protein exou;
PDBTitle: crystal structure of type iii effector protein exou (exou)
17c5w8sA_
29.1 11
PDB header:transferase
Chain: A: PDB Molecule:lipid-a-disaccharide synthase;
PDBTitle: lipid a disaccharide synthase (lpxb)-7 solubilizing mutations
18c4akfA_
27.9 26
PDB header:transferase
Chain: A: PDB Molecule:vipd;
PDBTitle: crystal structure of vipd from legionella pneumophila
19c4gdlC_
27.0 43
PDB header:protein binding
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
20c4nawC_
27.0 43
PDB header:protein transport/ligase
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
21c4nawO_
not modelled 27.0 43
PDB header:protein transport/ligase
Chain: O: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
22c4gdkC_
not modelled 27.0 43
PDB header:protein binding
Chain: C: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
23c4nawK_
not modelled 27.0 43
PDB header:protein transport/ligase
Chain: K: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
24c4nawG_
not modelled 27.0 43
PDB header:protein transport/ligase
Chain: G: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5-atg16n in complex with a2 fragment of atg3
25c4gdkF_
not modelled 26.6 43
PDB header:protein binding
Chain: F: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg12~atg5 conjugate in complex with an n-2 terminal fragment of atg16l1
26c4gijC_
not modelled 25.5 19
PDB header:hydrolase
Chain: C: PDB Molecule:pseudouridine-5'-phosphate glycosidase;
PDBTitle: crystal structure of pseudouridine monophosphate glycosidase complexed2 with sulfate
27c5uncB_
not modelled 25.2 23
PDB header:isomerase
Chain: B: PDB Molecule:phosphoenolpyruvate phosphomutase;
PDBTitle: the crystal structure of phosphoenolpyruvate phosphomutase from2 streptomyces platensis subsp. rosaceus
28c2d3tB_
not modelled 24.6 19
PDB header:lyase, oxidoreductase/transferase
Chain: B: PDB Molecule:fatty oxidation complex alpha subunit;
PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
29d1ks9a2
not modelled 24.0 29
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
30c3e18A_
not modelled 23.7 37
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua
31c6aunB_
not modelled 23.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:pla2g6, ipla2beta;
PDBTitle: calcium-independent phospholipase a2 beta
32c6iunB_
not modelled 22.3 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:enoyl-coa hydratase/delta(3)-cis-delta(2)-trans-enoyl-coa
PDBTitle: crystal structure of enoyl-coa hydratase (ech) from ralstonia eutropha2 h16 in complex with nad
33d1vyua2
not modelled 22.1 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
34d1vyva2
not modelled 21.7 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
35c4b3hA_
not modelled 21.6 27
PDB header:oxidoreductase/transferase
Chain: A: PDB Molecule:fatty acid beta-oxidation complex alpha-chain fadb;
PDBTitle: crystal structure of mycobacterium tuberculosis fatty acid2 beta-oxidation complex
36c3oa2B_
not modelled 20.9 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:wbpb;
PDBTitle: crystal structure of the wlba (wbpb) dehydrogenase from pseudomonas2 aeruginosa in complex with nad at 1.5 angstrom resolution
37c4hadD_
not modelled 20.3 26
PDB header:oxidoreductase
Chain: D: PDB Molecule:probable oxidoreductase protein;
PDBTitle: crystal structure of probable oxidoreductase protein from rhizobium2 etli cfn 42
38d1t3la2
not modelled 20.1 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
39c3l09B_
not modelled 19.9 9
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator2 (jann_22dec04_contig27_revised_gene3569) from jannaschia sp. ccs1 at3 2.81 a resolution
40d1iuka_
not modelled 19.4 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
41c2r60A_
not modelled 19.1 21
PDB header:transferase
Chain: A: PDB Molecule:glycosyl transferase, group 1;
PDBTitle: structure of apo sucrose phosphate synthase (sps) of2 halothermothrix orenii
42d1xbta1
not modelled 19.0 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Type II thymidine kinase
43d1t0hb_
not modelled 19.0 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
44c2csuB_
not modelled 18.2 21
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
45c2qytA_
not modelled 17.9 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:2-dehydropantoate 2-reductase;
PDBTitle: crystal structure of 2-dehydropantoate 2-reductase from porphyromonas2 gingivalis w83
46c2xmpB_
not modelled 17.6 19
PDB header:sugar binding protein
Chain: B: PDB Molecule:trehalose-synthase tret;
PDBTitle: crystal structure of trehalose synthase tret mutant e326a2 from p.horishiki in complex with udp
47c6hrdD_
not modelled 17.6 32
PDB header:oxidoreductase
Chain: D: PDB Molecule:3-hydroxybutyryl-coa dehydrogenase;
PDBTitle: crystal structure of m. tuberculosis fadb2 (rv0468)
48d1y81a1
not modelled 17.2 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
49d1sgva1
not modelled 17.0 11
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:PUA domain
50c3j4rA_
not modelled 16.9 22
PDB header:transferase
Chain: A: PDB Molecule:a-kinase anchor protein 18;
PDBTitle: pseudo-atomic model of the akap18-pka complex in a linear conformation2 derived from electron microscopy
51d2nu7a1
not modelled 16.4 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
52d1s96a_
not modelled 16.2 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
53c4ix1B_
not modelled 16.2 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of hypothetical protein opag_01669 from rhodococcus2 opacus pd630, target 016205
54d1guza1
not modelled 16.1 25
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
55c1dlyA_
not modelled 15.6 17
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin;
PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos
56d1dlya_
not modelled 15.6 17
Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
57c5zqzC_
not modelled 15.4 17
PDB header:lyase,hydrolase/transferase
Chain: C: PDB Molecule:trifunctional enzyme subunit alpha, mitochondrial;
PDBTitle: structure of human mitochondrial trifunctional protein, tetramer
58c6jczL_
not modelled 15.1 20
PDB header:isomerase
Chain: L: PDB Molecule:putative ketol-acid reductoisomerase 2;
PDBTitle: cryo-em structure of sulfolobus solfataricus ketol-acid2 reductoisomerase (sso-kari) in complex with mg2+, nadph, and cpd at3 ph7.5
59c3dfzB_
not modelled 15.1 29
PDB header:oxidoreductase
Chain: B: PDB Molecule:precorrin-2 dehydrogenase;
PDBTitle: sirc, precorrin-2 dehydrogenase
60d1llda1
not modelled 15.0 22
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
61c4akxB_
not modelled 15.0 18
PDB header:transport protein
Chain: B: PDB Molecule:exou;
PDBTitle: structure of the heterodimeric complex exou-spcu from the type iii2 secretion system (t3ss) of pseudomonas aeruginosa
62c3mebB_
not modelled 14.9 19
PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia
63c3gmiA_
not modelled 14.7 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0348 protein mj0951;
PDBTitle: crystal structure of a protein of unknown function from2 methanocaldococcus jannaschii
64d9ldta1
not modelled 14.5 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
65c5vbaA_
not modelled 14.2 19
PDB header:chaperone, hydrolase
Chain: A: PDB Molecule:lysozyme, esx-1 secretion-associated protein espg1 chimera;
PDBTitle: structure of espg1 chaperone from the type vii (esx-1) secretion2 system determined with the assistance of n-terminal t4 lysozyme3 fusion
66d1uxja1
not modelled 14.2 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
67d1xeaa1
not modelled 14.1 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
68c4qicB_
not modelled 13.9 33
PDB header:signaling protein/dna binding protein
Chain: B: PDB Molecule:anti-sigma factor nepr;
PDBTitle: co-crystal structure of anti-anti-sigma factor phyr complexed with2 anti-sigma factor nepr from bartonella quintana
69d1bg6a2
not modelled 13.8 33
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
70c3e82A_
not modelled 13.3 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of a putative oxidoreductase from2 klebsiella pneumoniae
71c3moiA_
not modelled 13.3 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50
72d1np3a2
not modelled 13.2 32
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
73c1xeaD_
not modelled 13.2 19
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
74d1mv8a2
not modelled 13.1 30
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
75c1m67A_
not modelled 13.1 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of leishmania mexicana gpdh complexed with inhibitor2 2-bromo-6-hydroxy-purine
76d1qhxa_
not modelled 13.0 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Chloramphenicol phosphotransferase
77d1gv0a1
not modelled 12.8 27
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
78c4tq0D_
not modelled 12.7 43
PDB header:protein binding
Chain: D: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg5-atg16n69
79c4ol9A_
not modelled 12.4 40
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative 2-dehydropantoate 2-reductase;
PDBTitle: crystal structure of putative 2-dehydropantoate 2-reductase pane from2 mycobacterium tuberculosis complexed with nadp and oxamate
80c3evnA_
not modelled 12.4 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
81c4hlnA_
not modelled 12.4 18
PDB header:transferase
Chain: A: PDB Molecule:starch synthase i;
PDBTitle: structure of barley starch synthase i in complex with2 maltooligosaccharide
82c4tq0B_
not modelled 12.4 43
PDB header:protein binding
Chain: B: PDB Molecule:autophagy-related protein 16-1;
PDBTitle: crystal structure of human atg5-atg16n69
83c5t2xC_
not modelled 12.3 29
PDB header:unknown function
Chain: C: PDB Molecule:uncharacterized protein lpg1670;
PDBTitle: crystal structure of uncharacterised protein lpg1670
84d1ojua1
not modelled 12.3 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
85c5yi4A_
not modelled 12.2 36
PDB header:protein binding
Chain: A: PDB Molecule:disrupted in schizophrenia 1 homolog,nuclear distribution
PDBTitle: solution structure of the disc1/ndel1 complex
86c1z82A_
not modelled 12.1 36
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: crystal structure of glycerol-3-phosphate dehydrogenase (tm0378) from2 thermotoga maritima at 2.00 a resolution
87d2f1ka2
not modelled 12.0 35
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
88c3ec7C_
not modelled 12.0 11
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative dehydrogenase;
PDBTitle: crystal structure of putative dehydrogenase from salmonella2 typhimurium lt2
89d1kgda_
not modelled 11.9 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
90d1ldna1
not modelled 11.9 30
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
91c2qq0B_
not modelled 11.9 24
PDB header:transferase
Chain: B: PDB Molecule:thymidine kinase;
PDBTitle: thymidine kinase from thermotoga maritima in complex with2 thymidine + appnhp
92c6jnkA_
not modelled 11.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-arabinose 1-dehydrogenase (nad(p)(+));
PDBTitle: crystal structure of azospirillum brasilense l-arabinose 1-2 dehydrogenase (nadp-bound form)
93c3k6jA_
not modelled 11.7 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein f01g10.3, confirmed by transcript evidence;
PDBTitle: crystal structure of the dehydrogenase part of multifuctional enzyme 12 from c.elegans
94d2ou3a1
not modelled 11.6 14
Fold:TerB-like
Superfamily:TerB-like
Family:COG3793-like
95c6aqjB_
not modelled 11.6 36
PDB header:isomerase
Chain: B: PDB Molecule:ketol-acid reductoisomerase (nadp(+));
PDBTitle: crystal structures of staphylococcus aureus ketol-acid2 reductoisomerase in complex with two transition state analogs that3 have biocidal activity.
96d1pzga1
not modelled 11.6 16
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:LDH N-terminal domain-like
97d1dlja2
not modelled 11.6 24
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
98c2hdnE_
not modelled 11.6 71
PDB header:translation
Chain: E: PDB Molecule:elongation factor ef-tu;
PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
99d1i1qb_
not modelled 11.5 16
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)

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